Array 1 162013-160086 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZBY010000004.1 Streptococcus salivarius strain E32 4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 162012 36 100.0 37 .................................... TTCCCATACCCGTGTAGTATAGGTACAACGCTAAACT 161939 36 100.0 38 .................................... TTTTTTTATTCTTAACTCTTGTGTAAAAACTACAGTCT 161865 36 100.0 36 .................................... TGTTTCTGAATCATTATCCCAGATAGAGTTATACAA 161793 36 100.0 33 .................................... ATTTTATTAGTTATTGATATTCTTTTATATTCT 161724 36 97.2 37 .............T...................... TTTGCCCAGGTCCTCAATATGAGACAATTGTGCTTTC 161651 36 97.2 38 .............C...................... AGAGCATCTTTAGTGAGTGTAATGAGTTGCTTGTTAGC 161577 36 91.7 38 ............C............A......T... TAAAACTTGTCGCCATCGATACGTTTGTTAATGACCTT 161503 36 91.7 36 .........A...........CA............. TTCATTATTATTGCACTAATAATCCACATACCTTGA 161431 36 94.4 36 .......G.....T...................... AGATTCTTTCTTTAAATCAGAAATGAAATCATCTAC 161359 35 91.7 38 .............T.......C.....-........ GGAGTCGAGATCACAACATCACTTGGCTTAGTGTGATC 161286 36 91.7 36 ........A....C.......C.............. GTTAGCAAATTTCATTTTGCTACCTCCTGAAAAACA 161214 36 91.7 36 .............T.......C..........T... AAACGACCAGACAAAACGACATTATTCATAAGATTT 161142 36 88.9 36 .G...........TC.................T... TCGTTGTACACCTCATCTCCAACTGGCTGTCGTTGT 161070 36 91.7 38 .............TC.................T... TCATATCTACTCCTGAGTGTTCAATTTCTTCTTCGTCT 160996 36 97.2 38 .............T...................... CGTCCAAATCGATTATCAATCTTCATCATTTTAGGTTG 160922 36 88.9 35 .............T......A....A......T... AATGATGACGCTACTAACCATCCAATCAATACCAT 160851 36 86.1 38 .T.....G.....C..T....G.............. CAAGTATCAGAAAGGACAGCGTTGTTCAAAACTTGACG 160777 36 88.9 37 .......G.....TC......C.............. CTATTTGAATCTGTTTCTAGTTTTCCATTCAATGAAG 160704 36 97.2 39 .....................C.............. AGTTTTATAGGCATAGATATATGATCGTCTGTTTTGACC 160629 36 88.9 38 A..............G.....C...A.......... ACATATAAGATAATAGCTCTTAATAATTGCCTTTGTTT 160555 36 94.4 36 .............CC..................... TAAAATACTGACACGCCTTGTTCTTCCCAACTAGAA 160483 36 94.4 38 .............T.......C.............. CACTAATAAACGCTTCTTGTCGTTTGAGCTCTTCGGCT 160409 36 88.9 39 .............CC......C.............T TCATAGCTTCATAAACCGTCCACCAGAATTTATCAGTTT 160334 36 97.2 37 .............T...................... TCAGTATTAGTGAAAGATATACTTCATTCAGTTACGC 160261 35 88.9 35 .............T.............-....T..T ACTCTTTTATTTTTTACGGTATACATAATTTTCCT 160191 35 80.6 35 ....C...G....C-......CA.........T... CATACGGAGCTACCTGACGACCCTCAGCATAATCT 160121 36 83.3 0 ..............................TTTTTT | ========== ====== ====== ====== ==================================== ======================================= ================== 27 36 92.7 37 GATATAAACCTATATACCTCGAGAGGGGACGGAAAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTTTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAATCTCAGTGAAGAAGAACGTGACTTTGCGAGACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCCAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCGACCTGTCAAGAAATGACTATCAGTCTCTCCTTAAGGATATCGAGAGTTTCTACAAGGCTGATGAAGAAGACAGTATAATCGTATATGTGACAACCAAAGAAGAGGTGACCAGTTTTAGTCCCTACAATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGGCCTGCAATCATATGGTACAATAGAGATAGTGTTTCCAGTGGGTCCTACATCTTGTGTCGCTAGCAGCTGTCTAGTGCACAAGATATGGG # Right flank : GAAAATTTTGAAAATAGTCTTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCCAATGAGGTGAAAAGTACTTTCAGCTTTTGGGGTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTAAAATTTCATGGCTTCTTGATGGAGCAATTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTCGTACATCTGCTCACAGATGACCTCGAGGATAAAGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGACCTGCCTAAGCTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGAGCAGATAAACTCTTAGAGATTTTCAATAGTGAGGACAATCAAACCTATTTTTCAATCATTTTTGAGA # Questionable array : NO Score: 5.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.20, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTATATACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [31-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 89144-88054 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZBY010000006.1 Streptococcus salivarius strain E32 6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 89143 36 100.0 30 .................................... CAAAGCAGGTAACACCGATATACGTAACCA 89077 36 100.0 30 .................................... AAACAAAGGAGTTTTAAACATGAGTTTGAA 89011 36 100.0 30 .................................... AATCGAATACAAGAGAATCGATACAGTTCT 88945 36 100.0 30 .................................... TAAAATGTGACAAGTAATATCATAATCAGC 88879 36 100.0 30 .................................... CACAGCCAGAAGATGAAGTGTATGGCTACT 88813 36 100.0 30 .................................... ATCTGAGAGGTATTTCTGATTGGTATGATC 88747 36 100.0 30 .................................... TATTGACGGCTCCATCTGTTGTCCACGTCG 88681 36 100.0 29 .................................... TTTTTTTATTCCTTCCCTCTTTTCCCCTC 88616 36 100.0 30 .................................... TCTATAAATGGTTTGATGATGTAAAAAATG 88550 36 100.0 30 .................................... CTGATGTCTTCCCTTCGTCTTGACTTGGCG 88484 36 100.0 30 .................................... ACTGGTCTATTCGTTTTAAAAACCGTGCAT 88418 36 100.0 30 .................................... ACAAGGGCAATCCTAAAGTCGAATGGATGA 88352 36 100.0 29 .................................... GAGGTGATAATAATTGCCGATATTTAATT 88287 36 100.0 30 .................................... CCACTAATGCGGACGGCAGAAAGAACGGTG 88221 36 100.0 30 .................................... CTGAGTTGTTACCGATAGAACCGACGCCCT 88155 36 100.0 30 .................................... CGCAGTTAGTTGAGAATGACACGACATTCC 88089 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.7 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATAGTTTTGTCTCAGAGGAATCTTATGATAGTTTTTATAAGAAAATTGGTCAGCTAGCCCAAAAGTATCCAAACCTAAACTTTATTTTGTTTCCTAGTGACCAAGGATATCTAAAGATTGACGAGGAAAGTAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTACGATGTTGAGTTTATGTATGAAAGGGTAAAGAAACATTATCCAAGTAATAATTTTCCGACGCGAGAAGGTTTTAGGATGTCCTTAGAGACTGTGACGCCTTATTTGTTAACAAAAATGACGAGACAACCTAGTCTCTCACTCGTTGATTCAGTAATTTTGAATATCTTAAATCAGTTGTTTCACTTTAACTATTGTATAAGATATTCTCAGACACCTGATGAGGAGCTATTACATAGATATTTAAAAAGTAAGAATTGACAAGTACAGTGATTGATTCTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTGATTCAACTTAAAAAGCCAGTTCAACTGAACTTGGCTTTTTAAAATACACGATATACATAAGGATTGTCAGGCTGTCCGACCTCTTTGACCTCAGTCAAATTAAGGATAGGCAGGCTCTGTTTGAGATTTTGATAATAATCCACAGTGATGGTACCAGTGACTTTCACCCAAGTATTGTCCTTGAAGGTTTGGTCACTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATTCCGAAACGGAAGATGAACTGATAACCCTTGGTTTGTGGGTCATTGTAGACAAAACCGGTATAGGTGACCTTCTTGCCCACAAAATCGTTAGGATAGAGGTAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCGAGCTCTCTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCTGGCTTCAAGTACTGAATAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //