Array 1 4084-5605 **** Predicted by CRISPRDetect 2.4 *** >NZ_RFCH01000100.1 Acinetobacter baumannii strain TG15479 Acinetobacter-spp-TG15479_505, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4084 28 100.0 32 ............................ TAACGTGGTGTGAGCCGAGAACCTGCAAGCCA 4144 28 100.0 32 ............................ TTTTGATGAGCAGGTATTTACACAATATAAAT 4204 28 100.0 32 ............................ TGATCAAGAATGATATGTACTAGCTCACTATC 4264 28 100.0 32 ............................ TTCGAGTCATAATTATAGTAAAAAGTCATCTT 4324 28 100.0 32 ............................ TACATAAAAATGCGGACCCAACGATAAGGATT 4384 28 100.0 32 ............................ ATTAATCGAGGAAAAAAAACATGAATGTTAAT 4444 28 100.0 32 ............................ ATCACTTAACCCATCATCAATAAGTTGGCCTT 4504 28 100.0 32 ............................ AGTCACCATTGTTCGAAGCTGTTGGGTCATTA 4564 28 100.0 32 ............................ TTGTTGCATCATTTGCGACTCATGACTATTTG 4624 28 100.0 32 ............................ AAATACAAAGTTAGGTATTGGTACTGGTGAAA 4684 28 100.0 32 ............................ AATATCCACCAATGATTTTGGTAAAGATAGAG 4744 28 100.0 32 ............................ AGACACATACGTAATGGTGTCAATATCGTATA 4804 28 100.0 32 ............................ TGCCCCAGCGAGCAAACGCCTTAAAAATCCTG 4864 28 100.0 32 ............................ GAGATTTTTGTGCGCTTATAGAACATGAGCTT 4924 28 100.0 32 ............................ GTAGGGATAGTGAGATTGTAGACCTTACAATG 4984 28 100.0 32 ............................ CCGCAGATTTACGGATGCCTGTAACTGTCATG 5044 28 96.4 32 ...A........................ TATCATGAACATTGTTCCTTGACCCACGGGCA 5104 28 92.9 32 ...A.....T.................. ATTCGATAGACTGATTCTATAAGCTTATTTGC 5164 28 100.0 32 ............................ TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 5224 28 82.1 27 ....C......TCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 5279 28 92.9 32 ....C....T.................. AAACAACGAGCCTTGTCGCGGGTCGCCCATGT 5339 28 96.4 32 ...A........................ CAAATCAAAAGTGCAGTTGCTGCCTCAATAAC 5399 28 96.4 32 ...A........................ TCTTCATCTGTTACATATGAAGCAAGGATCTT 5459 28 92.9 32 ...A.......T................ GTCAAACGACAGGGCTATAAACACTTAATCTT 5519 28 96.4 31 ...A........................ ACATTCAAAGAGGCTCATCGAATCCAATCGA 5578 27 78.6 0 A..T........TC........C.-... | A [5582] ========== ====== ====== ====== ============================ ================================ ================== 26 28 97.1 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCCTCATTTAATAAAGTTCGAGCACTAAGATAGGGTAAATCAAGTGCTTGCTGTTTACTTAAACGAATCCCGCCTTTTTCAATATTGGAGTTAATCGTCTTTAAACTAAAGTGTACTGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : ATTTCTCTTTCGAAATTTAAAACGACATGTTTTGTCGTTAAAAGGCCGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAATATTATATTTTTATTACATTCGAACTTTAACAATAAACTATGCATGTCATTCTCATCTCTGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCGATTGTGGATAGCTATGCTATTCGTACAGGACATTCATCTTGGCAAGCACCAATGACAATGGAAGGTTTAAAAGAAATTCGTAGCGCATTAAAAAAAGTAGCCACCCGACAAACTGCGGTAGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTAGGAGCAAAGCATAAATTTGCAAACGATGGTGCATATCCAGTTGCATCGACCAAAAAACAACAAAAACTACTAATGCTAGATGAATGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGGGACATGCATGATATCGGTAAGGCC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 942-3551 **** Predicted by CRISPRDetect 2.4 *** >NZ_RFCH01000014.1 Acinetobacter baumannii strain TG15479 Acinetobacter-spp-TG15479_419, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 942 29 100.0 31 ............................. GTCTTTGCCAAGTATGTTAAAGACCCAGCAC 1002 29 96.6 31 ............................C TATTTATTTAAAAACATTAAACGATTTAATT 1062 29 100.0 31 ............................. ACTGTAGTGGGTCATAAGGAGATTTAGTTAG 1122 29 96.6 31 ............................C AACATATGGAATTGCAGCAACCGATGCATAA 1182 29 96.6 31 ............................T AGTTCATCAAATGAAACTAACGCTTCCCATT 1242 29 100.0 31 ............................. CTCAGGCAATTGTTGGGAAAAGTCGATTTCT 1302 29 96.6 31 ............................T GTTTCAAGGTCTCGGATAATTCCACATTCAT 1362 29 100.0 31 ............................. TATACATCGTTATTGCATTCTGCATATCCCA 1422 29 100.0 31 ............................. TTAAGAGAGGCTTGTTTAGATCAATACTTGC 1482 29 100.0 31 ............................. TAACAGGTCAAGTTACTGTTGACCCGGTAAA 1542 29 96.6 31 ............................C CAAGGTGTGCGCACCAAAGCAAAACCAATCT 1602 29 96.6 31 ............................G CCCACAGGTTGAGCATCAACGGCCATCGAGA 1662 29 100.0 31 ............................. TCATAGAGCTCACTTTGTCGTTGAGCCTGCA 1722 29 100.0 31 ............................. TCATAGAGCTCACTTTGTCGTTGAGCCTGCA 1782 29 96.6 31 ............................T TGTAAAACCTCTGGATTAAGCATTGCGTTCA 1842 29 96.6 31 ............................T CTTCCTGAGTTTTAATCCCATTTGCCTTACA 1902 29 96.6 31 ......T...................... AAATGACCATCAATCGACAGTGGTTTACCTT 1962 29 96.6 31 ............................C ATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 2022 29 100.0 31 ............................. GAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 2082 29 100.0 31 ............................. ACACGTTCTCTATATCGCTGTTTGCGGTCAT 2142 29 96.6 31 ............................T TCAGTTGGATATGCCTTTGATACCAAGAAAC 2202 29 96.6 31 ............................T CTCCCCCCTCCTCGATCGGCTGTGAAAGTAC 2262 29 96.6 31 ............................T TTAAAGCGTCATATTAAGGCGCAGTTCCGAA 2322 29 100.0 32 ............................. AAGATCTGACCAGCTAAAACATTCTGGTTATC 2383 29 96.6 31 ............................T AGAAGCAGAAAATATCCAACTCATTGCTACT 2443 29 100.0 31 ............................. CATGGGAGCTTTCATTCATATATGTCATTAG 2503 29 100.0 31 ............................. CGTCCACGGTAGCGGCGCCAAGGCTGCCAAT 2563 29 96.6 31 ............................T GTTTTGCTAATTTATCAATATCGATTTTCAC 2623 29 89.7 31 ...AC.......................G GTATTAGTGCGAATTGGCTTTTAGCCCACGC 2683 29 89.7 31 ....C.......G...............T TAAATGCTCAACTACTTCTGTAGCTAATGGA 2743 29 86.2 31 ...GC........C..............T CTCAACTCATTGATTTTTTCTTCTCTTGCCA 2803 29 93.1 31 ...GC........................ TTTTTATTCCAAGGGCTTTTGCTTCTTGTGA 2863 29 86.2 31 ...GC......T................T TCAAATGATTTAATGAGCTTGTAGCCATTTT 2923 29 86.2 31 A..GC.......T................ CGTCTTCTAATGATGGACTTTAATCCAATAT 2983 29 82.8 30 A..GA.......TC............... TCTCACTGAAGATATGACCATCACTTTCTT 3042 29 75.9 31 CG..C.......CC......C.......T TTATAACCACCAGTTAAAGTATTGACTAAAA G [3044] 3103 29 75.9 31 ...GC.G...A..C.AT............ CAATCGGGGACGTGGTCAAAAAGATTATCAG 3163 29 93.1 31 ....A.......................G TGTTGATGTTGTTGTTCAGATCGTTTTTGGT 3223 29 79.3 31 ...GC....T..TC..............G ACATGCGAGCTTTCATTTAAATGTGTCATCA 3283 29 93.1 31 ....G........C............... TTAAAGCATTTTCATATGAGCCTTCCTCATT 3343 29 82.8 31 ....A......TCC..............T TCGGATCAGTCCAGTCATCATTCTCGTCAAT 3403 29 86.2 31 T..G........G...............T ATTATTGCGCGACAGAACGTATCAATTAATG 3463 29 89.7 30 ...GC.......................C AAGCTGATGCTTCCTTATGGTTACAGTCAG 3522 29 82.8 0 .G..C...................AT..T | G [3526] ========== ====== ====== ====== ============================= ================================ ================== 44 29 93.7 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACCCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCTTACCTATTTTACACGGTAAAACACGTCGTGGAGGTCTAGTCTTCGACCTCGCTGATCTAGTTAAAGATGCTTTTGTTATGCCAGTCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTTCGAATGCAACTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGATATATGTAGTAAAATCAAATAAAATCATATATTTAATCTAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTTGAATCTTAAAAGAAAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATTTTGGTGATGGCGTCAATTGAACAAATATAATAATATACTGATTTATCTTAATTAATTTTTATAAAAAAATCCCAGTGTACATGACAGTGTACAAATTATATGTTGCTGGCCTATTTCCTTCGGGTTTGGTTGCTATATACGGAGTACAACTCATGTATTAAACACCTTACTGGCAATCCAGTAACACTACCCTACTCCACCACTTACACAGCATCACTTCGACATCTCGTCAACGCAATTTTGCGTTCGGCATTGTTTTCAAAAGTTTATCCAGAATTAGACGCACCTAAAACCCGATAAAACCCTATCAACTCTTATCATTAGCTCTTAATAAAACGTAGTCTTTTATCCAGGTAGCTACTACGAATTTCTCGTAGTAAGGCACTGTATTTGAAACATGGAAATGAGATTCCTTAAATTAGCGATAAACCTTGTTGTATATAG # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.38, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-57] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //