Array 1 555-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNAD02000007.1 Streptomyces xinghaiensis strain ATCC 19609 contig7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 554 29 100.0 32 ............................. TACTGGGCGCTGCAGGGGCGGGTGGAGCCGCT 493 29 100.0 32 ............................. GTCGGCGAGGCCGTCGGGGAGATCGCCCCCTG 432 29 100.0 32 ............................. CGAGAGGGGATGACGATCATCCGCGCCTTCGC 371 29 100.0 32 ............................. CGGCACGGCGGGATCGGTTGACCGGAGGCGTC 310 29 100.0 32 ............................. GCCGAGCCCCACCAGGACGATGCCACCGCCGA 249 29 96.6 32 ............................C CGTCCACGAACTGCGCCGAGTTGAACACCCGG 188 29 100.0 32 ............................. CAGATCGCACGAAAGCTGCGCAGCTACCTGAG 127 29 100.0 32 ............................. GCCGAGCCCCACCAGGACGATGCCACCGCCGA 66 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.2 32 GTCCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : CGCTCTCGGCACCCGGCGCTCGCAGATAGACCGGCTCGTCACGCACGGCCGCGAACGCCGCCGGCACCTGGGCCTGGAACGGCGGCGTGATCTTGCCCAGGTCATGCAGCCCGGCCCAGAACGACAGGACTACCCGCGCTTCTCTCACGGGCAAGCCCAAAGCATCAGCCAGGCGCTGTCGCATACGCTCGCCGAGTAAGCCGTCCCAGAGCGCGGAGAACACAGCGGCAGTGTCGAGCAGGTGACACACCACCGGGTACGGCCGCGATAAGCCCTTCTCCTTCCCCCACATACGGGGGTCCAGGAGAGGTGTCCCGTCGGCCGGGGGCTCACTGTTCATCATGCGCCAGGGGTACCAGTCGGCACTGACAACGCCCAGCACGCCCATACACTGATCTGTCATGACCTCACCTCACAGCGCCGATTTCGCTCGGGCCGCGCTGCGACTGCACAAGGGCAAAGTAATTGCAAAGGCGCTCTAGAAGGCCAGGTCAGGAAGT # Right flank : CCGTCCACGAACTGCGCCGAGTTGAACACCCGGGTCCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 10292-12580 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNAD02000007.1 Streptomyces xinghaiensis strain ATCC 19609 contig7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10292 29 100.0 32 ............................. CTGCGTGGCGACCATGCCCGTACCGAGCCCGG 10353 29 100.0 32 ............................. CAGGCCAACTACGACGGCAACCGCGGGGACGA 10414 29 100.0 32 ............................. TTTAGGAATCGCCGTCCGCGAACGCGTCGAGC 10475 29 100.0 32 ............................. AGCAGACCGCCGAAGGCCTCGCCAACGTCTGG 10536 29 96.6 32 ............................A GAAGGGCAAACGGCTGCGCGCGGAGCCCATCG 10597 29 100.0 32 ............................. CGGGGCGGGTCAATATGTGTGCACAGATAGCG 10658 29 100.0 32 ............................. GCGGCGTACGTCGCGCTCGTGGCCTCGGCCGC 10719 29 100.0 32 ............................. CAAGCGGTACACCACGGTTCATGCACAGTTTC 10780 29 100.0 32 ............................. CCTTCGGCGGAGGCCTTGGAGCCGTCCGTGGC 10841 29 100.0 32 ............................. AGCCGGGCCGAGGCCGCGCGGGCCAACCGGGC 10902 29 100.0 32 ............................. GAGGCCATCAAATTCGGTGGCTATTCCTACAG 10963 29 100.0 32 ............................. TCGAAGATTCCGCCGTACCGTACGGCGATCAT 11024 29 100.0 32 ............................. ACGCGGACCAAGGCCCGCGCCCGGAAGAAGAA 11085 29 100.0 32 ............................. CCCTCCGCGTCGTCCTCGACAACGCCGACGAC 11146 29 100.0 32 ............................. GAAGTCTCGCCGCTGCTGCTGGACATGCTGGA AGCG [11164] 11211 29 100.0 32 ............................. CGAGGAAGCGAAGGGAGCGGCCGCCGTGGCGG 11272 29 100.0 32 ............................. GGCCGCCCGCCGGGCTGCGAAACGCGGCGGAC 11333 29 100.0 32 ............................. CACCTGTCGCGTCCAGTGACGGCCCGTCAGGC 11394 29 100.0 32 ............................. CAGAAACGTGTCGTGCTGGAGGCTCTGGCCCG 11455 29 100.0 31 ............................. ACCCGCATGGCCGCGGAGATTCCGGCCTGGC 11515 29 100.0 32 ............................. TGGCTGCGGCCGCGCGCCTGGTGCCCGACGTG 11576 29 100.0 32 ............................. GTACTGCCGGGCCTGCTCGGACATGGGCTCCG 11637 29 100.0 32 ............................. TCGCCGTGCCGTGCCCGACCTGCCGACCCGCC 11698 29 100.0 32 ............................. TCCTCCGGCAAGGACGCGCAGCGCAACCCGAC 11759 29 100.0 32 ............................. CCAGCCGATCGCCTCATCCTGACCGGCGATCC 11820 29 100.0 32 ............................. TAGGTGACGATCTGGGACACGCGCCCGGCGCT 11881 29 100.0 32 ............................. CAGGCGAGAGTCTGCACGCCGGTGATGGCCCA 11942 29 100.0 32 ............................. AGCACGGAGCCCGGTGGGCAGGTGGCGCGGCG 12003 29 100.0 32 ............................. ACGGGTGCCCTGTCCCGCTCCTACATCGTGGA 12064 29 100.0 32 ............................. CTCACCGTCTCCGACGCGACGGCCGAGACCAT 12125 29 100.0 32 ............................. CTCCTCGCGGTGAGCGCGGCGGACTGTGTGGA 12186 29 96.6 33 ............................A GTGAGGGGGGTCGAGTTCTTGCCGGACGCGGCG 12248 29 100.0 32 ............................. CATTGGGACACGATCGTTGCGAAGACGCGGGC 12309 29 96.6 32 .......................A..... GACGGTTACTCGATCGCGCTGCAGATGCTCGC 12370 28 96.6 32 ......-...................... AGCGAGACGTAGCTGCGGCCGGTCACTGCGGT 12430 29 100.0 32 ............................. TTCGCGGACCGTCTCCGCGGCCTCCACGTCTA 12491 29 96.6 32 ................T............ ATCGTCTCGCCTGATCACGTTCGCCGTGCCAT 12552 29 89.7 0 ..........T...........C..T... | ========== ====== ====== ====== ============================= ================================= ================== 38 29 99.3 32 GTGCTCTCCGCGCGAGCGGAGGTGACCCG # Left flank : CCCGCGCATCGTCGCCGACATCCAGCAACTGCTCGACCCGGACACCGAGTACGAGGTCCCGGACCCGGAGGAACAACTGGTCGACCTGTGGGACCCGGTAGCCGGCGCGATCCCCGGCGGGGTCAACCACGGAGTGGAGTCGTGACCGCGCCCACGAAGGGACACGACCCATGTCCTCAATGATCGTCATCTCCGCCACGGCGATCCCCGACCACCTCCGCGGTGCCCTGAGCCGCTGGCTGCTGGAGGTAACACCGGAGCTGTACGTGGGCACGGTCTCGGCCCGTGTCCGCGACGAACTCTGGACCTCGGTCGCCGCCTGCGCCGGAGACGGCATGGCCGTCCTCGCTCACCCCGACGACAACGAGCAGGGCTTCACCCTCCGCACGGCCGGCACCCGCCGCCGGGAACCGATGGACTTCGACGGCTTGACCCTGATCGCCTTCCGCAGAGAGAGTCAAGAAATGGCAAACCGCTTCTGAAAGCGCAGGTCGGGAAGT # Right flank : GGTGAACCGAGTGTCCAACGCTCGGGCATTGGACGGGTTCCGGTCGGCTGTGGTGTTCCTGTCGAAACAGGAACACCACAGCCACCGTGCCGTCAGTTGTCAGGATCTGCCTCCAAGCCAGCCAGCGCCACGTCGATGAGGTGGTTGGAGCTCTGCTGGGCGCCCCGTAGGACCTTGGCGTAGAAGCGGTAGAGGACGGCGAGGCTGTGCCCGGCGCGGCGGGCTACTTCGACCGGGTCCACTCCGGCCTTGAGCCACAGGGAGATGCCCGCGTGGCGGAGGGAGTAGGGGACGTCTGCGAGGGATGTTCTGGCCTCCTCGGGGCTCAATGCCTTCTCGCGGGCCTTCTCCCACAGTTCGCAGTATTCGGTGGAGCGGACCCGGCCGCCGCGGACCGCGCGGAAGAGGCGGCCGTCCGGGGCGGTGCCGTGGGTGGCCAGATGGGTGCGCAGCATGCCGACGAGAACGGGCGGGATCGGGACGGGGCGGGTCGCCTTGCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 216810-216293 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNAD02000017.1 Streptomyces xinghaiensis strain ATCC 19609 contig17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 216809 29 100.0 32 ............................. GTGGCGCAGACCGTGCTCGGGCACGAGCGGGG 216748 29 100.0 32 ............................. GAACAACTCCTCCTCAAGTTCGTCCAACGCCT 216687 29 96.6 32 ...........................T. GCCTGGTCAGAGAGGTGGTGGGGTCGTTGAAG 216626 29 100.0 32 ............................. GCGTATCAGCGCGCATCCGGGCAGTGGGTCAA 216565 29 100.0 32 ............................. CCCCGCCCTGCCCGGAGGGGAATCCGGGAGGA 216504 29 100.0 32 ............................. CTCGGACCGGCGGACGGCCTGACGGGCCCGCT 216443 29 100.0 32 ............................. TGGACGCGGTACGAACTCAAGAACGTTGCTGA 216382 29 100.0 32 ............................. TGCTCGGTGCTGCGCACATCGCAGTTCCCGAA 216321 29 89.7 0 .............A...........A..A | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.5 32 GTCCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : GGCCACGGGCCTGGGCATCCGGGCCTGCCAGGCCGGTCACCGAGTCGCGTTCGCAACCGCCGCCGAGTGGGTCACCCGCCTGGCGAAGGCCCACGAGACCGGCCGCCTGGACGAGGAACTGGTCCGGCTCGGCCGGATCCCGCTCATCATCGTCGACGAGGTCGGCTACATCCCCTTCGAGCCCGAGGCCGCGAACCTGTTCTTTCAGTTCATCTCGGGCCGCTACGAGCGGGCCTCGGTGATCGTGACCAGCAATAAGCCCTTCGGCCGCTGGGGCGAGGTCTTCGGCGACGATACCGTCGCCGCCGCCATGATCGACCGCCTCGTCCACCACGCCGAAGTCATCTCCCTCAAGGGAGACAGCTACCGCATGCGCGGCCGCGACCTCGGACGGGTTCCCGCCGCCAACACCAGGGAATGACCAACATCAACTGACTACGGGTCCACTTTTCATCCGCTGCCTCCGGTCCACGATTGCGCCGTTACCGACACTCGGACAG # Right flank : CTGCGGAATGGCAAGCAGTCGTTCTGGGCCTTCCAGATGCTCCAGAAGTTCACAGCTGGACCGAACCCCGTCCGCAGTCGGTCCGTGGATGGTCCGTGGACGGTGATCAACCGGGGAACAGAGTGAGACAGGGTGAGACAGCGAGCCGCAGGACGCGGCTCGCAAATCGGCCCGGAACCCCGTTCCACCTGCGGTTTGTGTGAGCTGAGGAAACTGCTCGATTCGTGCGGTCGGGGGCCATTTCAGGACACTTCGGCTTTCAAGACCGTTCCCTTAGGCCGCTCGGGCAACCCTCCCTCGCCCCCGCCCACCTGCGGCGGAAGCGCCTACAGCCTACCTGGCGGGCCCAGCCGTAGGGCTCTTGGTCCGTCCCTCGGCCGTGACCTCGGAGACCGTGCTTCCGGCCGCTCGGCGCCGCGGGCAGGCGTCCCCATGCTAAGCGGCACGATCGCTTCTCTGTGGGGCAGTTGAGGAAGCGGCACGTCTTGCTCAGGTGGACG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 220484-219051 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNAD02000017.1 Streptomyces xinghaiensis strain ATCC 19609 contig17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 220483 29 100.0 32 ............................. GCCGAGCCCCACCAGGACGATGCCACCGCCGA 220422 29 96.6 32 ............................C CGTCCACGAACTGCGCCGAGTTGAACACCCGG 220361 29 100.0 32 ............................. CAGATCGCACGAAAGCTGCGCAGCTACCTGAG 220300 29 100.0 32 ............................. GACCCGGTGACGGGGCGGTCGGTGTGGTGGCC 220239 29 100.0 32 ............................. CTCCGCTGCCAGTTCGCGGTGCGCACGTCCAT 220178 29 100.0 32 ............................. GCCCCGACGGGCGGGGCGGGGTGCGGGTGGTG 220117 29 100.0 32 ............................. CCCAACCTCCGCCCCGTCGGCGGCAAGGGCCA 220056 29 100.0 32 ............................. TAGGTGGCCACATGCCGGTGCCCCGTGATCGT 219995 29 100.0 32 ............................. GATGCGGAGCCGAATGGGTGCAGGACTACTAC 219934 29 100.0 32 ............................. GCGATGTGGTCCAACGTCCTCGGCTACTACGC 219873 29 100.0 32 ............................. CCTTCGCGGATCATGGTGTCCCTTTCGGTGTG 219812 29 96.6 32 C............................ CGGGTGCCGTCGCAGCGTGAGGCGGGTGCGGC 219751 29 100.0 32 ............................. CGGATACGCCTCCTGGCTCAACGGCACGATCC 219690 29 100.0 32 ............................. CACGACGCCGCCTGACCGCCAGAGAGGACACC 219629 29 100.0 32 ............................. GCTGGCCCGCCAAGACCAGCCGCGACACCGAC 219568 29 100.0 32 ............................. TTGTACATGGTGGTGAGCTTGTGGGTTCCGCT 219507 29 100.0 32 ............................. TCACGTACGGGGACCTCGGTACGTGACCCGGT 219446 29 100.0 32 ............................. TTGTTGTCCCAGGGTGTGTAGTCGTAGCCCTG 219385 29 100.0 32 ............................. CCGTGGAAATGGACCCGGATACGGACGAGGTC 219324 29 100.0 32 ............................. TTGGCCGCCCCGGGCGTATCGGGGCGGCCACC 219263 29 100.0 32 ............................. CCGGCGTTCTCTTACCGTGACTGGCGAGGAAA 219202 29 100.0 32 ............................. ATCACCCGCCACGGCGGGCCGACCATCGCCGG 219141 29 100.0 32 ............................. GCCGCCGCCAAGGCGCTCGACGACGCCGCCGC 219080 29 100.0 0 ............................. | A [219074] ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.7 32 GTCCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : | # Right flank : GTCGAGCGGGGCACCTCGCACGGCTCGGATGTCGACAACGCCTCAAATTGTGCCGCCTCCAACGGATGAAAAGTGGCCCGTCTGAACGGTCTGGCTCGTTGAGTCAGGCAGGGAGGAAGGGTGATCAGCGTGGAGGACTGGGCGGAGATCCGCCGGTTGCATCGGTCTGAGGGCATGCCGATCAGGGCGATCGCTCGGAAGCTCGGGATCTCGCGGACGACCGTGCGGCGGGCGGTGGCCAGCGACCGGCCGCCGAAGTATGAGCGGGCCCCGAAAGGGTCGATCGTGGATGAGGTCGAGCCGAGGATCAGGGAACTGCTGGAGGTCTGGCCGGACATGCCGGCGACGGTGGTGGCGGAGCGGATCGGCTGGCAGCGGGGGATGACGGTGCTGCGGGACCGGCTGCGGGACCTGCGCCGGGATTACGTTCCGGCGGACCCTGCGTCCAGGACGGCCTATGAGCCGGGTGAGCTGGTGCAGTGTGATCTGTGGTTCCCGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [33.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //