Array 1 815903-816652 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOXG01000001.1 Pseudomonas sp. NFPP07, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 815903 28 100.0 32 ............................ ACAACAGAGAGCCGGTTTGGTCGCCTTCAACG 815963 28 100.0 32 ............................ ACAGAGTCCGGAAACCCAGTCTGTTGCTCAGC 816023 28 100.0 32 ............................ TTAGCCAGCGCTTCAATGCCGCCGTTCTCTAC 816083 28 100.0 32 ............................ CAAACAAACGGTTCCACTGCGCGTTCCTCCTA 816143 28 100.0 33 ............................ AACGGGAGGGCCGCTCGTCAGCGCCCGATTGAT 816204 28 100.0 32 ............................ ATAGGGATACATATCCAGTTCGTCGAGGGTGT 816264 28 96.4 32 ..............T............. ATGTCATCGCGAGAAATCGCAGAGCTGACCGG 816324 28 100.0 32 ............................ TTCTCCACCTGGCCGTAGTAATTCTGGCGCTC 816384 28 100.0 32 ............................ AAACGCATTGTTCAGCCCCATCACCGGGTCGA 816444 28 100.0 32 ............................ TTCCAGGCCCCGCCCGCGCCAGCGGCGAGCAG 816504 28 100.0 32 ............................ TTTTCACTTCTGCCACCGATGCGGTGGCAGCG 816564 28 96.4 32 .......A.................... GTGGTGGCCACTCGTACCGACTACTTGCTGTC 816624 28 78.6 0 ......................CTCCCC | T [816644] ========== ====== ====== ====== ============================ ================================= ================== 13 28 97.8 32 CTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : AGCGTTGGCAAGCCTGTTGGCGCTGAACTGGCTGACGGGCATGCGCGATCACGTGCAACTGGGCGAGCCCTGTGCGGTGCCCAGCCAGGTGCAATACCGACATGTCAGCCGTGTGCAGATAGACAGCAACCCCGAGCGTGCTCGTCGACGCCTGGTCAAGCGTCACGGGATTAGCGAAGAAGAAGCCCGTCAACGGATTCCCGACCACGCCGCAAAACGCTGCGACCTGCCCTTCGCCAACCTGCGCAGCCACAGCAATGGCCAGACCTTCCGCCTGTTCATTCGCCACGGCCCACTGCTCGATACACCGCAGCCAGGCAGTTTTGGCAGCTATGGTCTGAGCACGACGGCAACCATCCCCTGGTTCTGACCCTCTTTTTTTCATCTGACAAAGCCCCTTGTAAAATCAATGAGTTACAGGGGGCCTCGAAAAAAGCATGTAAACCTGGTTTTGAAGGGTTTTCTCTTTAAGAACGTGGGGTTATGGAGGGAGGGGTCTA # Right flank : CATCTCAGCCAGTTCAAACAACTCGCTCTCAACACCTTCTCGACCATCCCCCAATCCAACATCCGGAATTTTCATACTGACCCCCGCACTTTATTTCGTTTGCGGCCCCACCCCGCTCTTGGCTTAGATAGCCCGCATGTTCCAGGCAGACAGAGCCCTTAGCCCATGAGCAGCGAAAGCATCAGCCAGTCGATTTCCATCGTTCACCCCATCCGCCTGAGCCACGGCAGGAATGCCGAGGTATGGGACGAGAATGGCAAGCGCTACATCGATTTCGTCGGTGGGATCGGCGTGCTCAACCTGGGGCATTGTCATCCGCGGGTGGTGGTGGCGATCCAGCAGCAGGCCACCCGGCTGACCCACTACGCGTTCAACGCGGCGCCCCATGGGCCCTATGTGGAGTTCATGGAACGGCTGGCGCGCTTCGTGCCCTTGAGTTACCCGGTCAGCGGCATGCTCACCAACAGCGGCGCGGAGGCGGCTGAGAACGCCTTGAAGAT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2-811 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOXG01000028.1 Pseudomonas sp. NFPP07, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2 28 100.0 32 ............................ AGATAGCGGCCGTCGTCACCCTCGGGCCATAG 62 28 100.0 32 ............................ AGTTTGAGCTGGCGGACATGGCCAAATGGCTG 122 28 100.0 32 ............................ TGGAACATCCAGACCGTACTTGCCCCAGACAC 182 28 100.0 32 ............................ GCGCGCAACGCCGGCGTCTGCAAGACCTTTCT 242 28 100.0 32 ............................ AATACTGGTGAACCACACGTCAGCGACTTCAG 302 28 100.0 32 ............................ ATGAATTCAGCCCACTCGTCGGTCTTGCGCTG 362 28 100.0 32 ............................ GAGATCGTGACGGTCAGCGCCTTGCCCATCCG 422 28 100.0 32 ............................ TACTTCCCCGATCGTGCCGCCCTGCTCGAGCG 482 28 96.4 32 .....................A...... TGTCTACCCCAAGTGATTCGATCGCGTCGGTA 542 28 100.0 32 ............................ ATTGGCAGGCCGCGCAACATCAGCATCGACAT 602 28 100.0 32 ............................ TTCACCCCGAGATCCGCGGCGTTTATCCCCAC 662 28 100.0 32 ............................ ACACCCTGAGCCCGTCAGCGCAGGCTGTCGAT 722 28 100.0 32 ............................ CAATCAACCCCAACTGCTGCAACCAGGAGAAC 782 28 92.9 0 ......................C.T... | GC [804] ========== ====== ====== ====== ============================ ================================ ================== 14 28 99.2 32 GTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : CG # Right flank : CGCATTGAAGGTATGGCCCAACTCGCTTTAACGACTGGCGTTAATGGTCGGTAGAGTGGGAGCTCGCCTCGATCCCGGTCGGGGCGTTTTTTTGTCTGTAGACCCGTAAGAGGCGAACTACCAAAACAGCCACCTCATCAAAGTTCAGAATCGTCTTACAGCCTTGCCTTTCGCCACTTGCTAGGTTCGGGGAGTTGCAAAGAATCAGAGCCTCCCCCCACGGATCAGCTAAGGCAAGGATGATAAATGCTCCCCTCTGCTCGCCTGGGCGACAAACACGTCTGCCCACTTCCAGGTCATGGCACCACCTCGATTACCTCCGCTTCCAGTGACATAAACATCAACTTCATGGGTGCCGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1245-1632 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOXG01000025.1 Pseudomonas sp. NFPP07, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1245 28 100.0 32 ............................ TTGCTACCCTGCGTCTGCACGCGCGACCCTGG 1305 28 100.0 32 ............................ AGGACGGCGTTCAGTACACCACGCTCGCAGAG 1365 28 100.0 32 ............................ TTCAACGGCGGGCCGAACATCACCCCAGAACC 1425 28 100.0 32 ............................ TGGGCGCTTGAGGTGGCGGGTGTCACTCGCGC 1485 28 100.0 32 ............................ GCGTCAAGCTCACGGCCGCCACGCAGCGCGAT 1545 28 100.0 32 ............................ AACCTGTGGTGCGCGATATGCCAGTGCATTGC 1605 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : AGGTTCGTTGCTTGCAGCCTTGAAACCCACCGCGGCGGGGCCTGCGGGTAACGATTCGCTCTTCACCGTCCGCCCAGGCATCAGCGCCGAAGAGGCGTTGCTTCACGTCTCCATGCTGCTCAAGTCCGCCGAGGAGGTTTCCGACGAGATCACCGAACACGCCAGCGGTATCGAGCGTGGCCTGATCTGGTCGTTGGTGCATTCCGTGGAGATGGCGCGCGGAGTGGTGGATGCCTTGCTCGACGGAAATCGTCGCTGATCGGCAACGGCCCGCTGGCTGCGATCCTTCTTGATATTCGCGGCTGGTCGGGTCAGACAAAGCAAATCCATGACGCTAGTCTGAGCACCGGTGTTCTGCTCCCTGACGCTGACCCTTTTTTCCGAGCGGATTCCGGACCTATGTAAATCAAGCACTTACAAAGGTCCCCGAAAAGAGGGGTAAATACGGTGTTCAGCATGATTTCTCTTTGAAATCATGGTGCTATTGGGATATTTGTCTA # Right flank : T # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //