Array 1 3188-3653 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANIH01000112.1 Leptospira kirschneri strain CBC613 ctg7180000007005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 3188 37 100.0 34 ..................................... ATAGAATAGCGTCTAAGAAAGAAAAAGAAAGAAT 3259 37 100.0 34 ..................................... TTCATCCAACGCTTTCAAGATTCCGAATATTAGA 3330 37 100.0 35 ..................................... CCTGAAAGACCCCAATAATTTTGTCAGCGTATCTT 3402 37 100.0 34 ..................................... ATCGTACGGCCTATCAATGATGATTGCTTTCGGT 3473 37 100.0 34 ..................................... ACATCGCTCTCAGGCATCAAAAAGGCTGCTGCAA 3544 37 97.3 37 ................G.................... CATCGTAACCCCGTTACCGGAGGTTCTTCTTAGAATT 3618 36 81.1 0 ................G.......G..T.-.CA...A | ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 96.9 35 ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Left flank : TAGAAAGATTATCACAGTCCAAAGTTAGAATTTTATCTTCTTCGATTTTTCCCCATTGAATCGAATTCTTTTTTTTGAATCGTATATAGTTAGTCGCCATTCAAAATACCTAAACGTATAATAAGAATTTTATAAAAATGCCATATTTGTGATTAATATATTTTTAAAATACAACAATCAGTAAAGAACATATTTAGTTGAACAACATTTTTTATTTGTTTTTATAGAAAACCCTATCTTTGCATAAATTAAGCGGTTTTTAGTTTCAGGATATTCTTGACTTTTAAAGGCCGATCCTTTTATGATATAACACTTTTTGCGAACCTGTTTTTCCCGATTCTTTGCGGCCGGTTCGCGTTTAAACCTTTGGTCTACGTTAGTCGATTTGACGGTTTTACTTAGTATTTGTATGGTATGCTCCGATTCGGTTCGCAATTATTATGTCTAGAAAGCTCAATAGAGCTTTTTCTAATTCATAAACTTGCACCTTTTCGGCCGCT # Right flank : AAACGATTTATTTAAAAAAAATTATTTTAGGTTTTAAGGCGACCTCTTTATAAAAGTTTTCCCTTAAAGTAAAATCCTAGATATTCAATTATAAAATTCTAATTCATATAACGTGATTTAAATTCTAGATATTTATTTTATAAAACTGAATTTCTTCGTAAAAAATTGCGAGAGAACGATTTAAGCTCTACTGAAAAAATGTAGGAACTACTACATTTTATAGATTGAATAAACCATTGTTAAACTTTATAACAAAGTACGACTATGAGAGGTAGTTTGTGGGAACTCATACAATCTGATTACTGTGATGTAGGTTTATTCCAAGCAAGGAATTTGGTTCTACTACTGATCTCTATAAAATTGAGTACCGTTAATTTTATCGCAAAACACTGATTCCATGCAAAATATTAGGTATTTTATTGATAGTTATGAGTGATAATTATATAATAGAGTTGTTGAAAAATTAATTCTCCATCTGTTTTCTATTTCATAGAAACGGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 77788-78615 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANIH01000142.1 Leptospira kirschneri strain CBC613 ctg7180000007012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 77788 37 100.0 33 ..................................... CCTTGCTTGATGATCTGCAATCGTATTCTCTTT 77858 37 100.0 35 ..................................... TCATAAGCATGTCGATAATGAGAACTGTGATAACT 77930 37 100.0 34 ..................................... TAACAAAGAAGGTTGGATGAGTATTGTTAATAAG 78001 37 100.0 34 ..................................... AACTGTTCTTCTCGCACTTTTTACCTCTTTTTAA 78072 37 100.0 35 ..................................... TAATTGTTTCACTTTCTTCCCTTATTTAAATAATC 78144 37 100.0 36 ..................................... GAGTGCCTCGTAGGTATAGAGTGCTTCATTTAACGG 78217 37 100.0 34 ..................................... TTGACTAATAAGAATTTTGACGATTTCTTAAATT 78288 37 97.3 37 ..........................A.......... TAACCCTTCTCCAGTAATGCAGTATTCAGATTCTCCT 78362 37 100.0 34 ..................................... AGCCATGTGTCCGACGATTGCGTTTGGAATCCCG 78433 37 100.0 34 ..................................... AAAAACGAATCGTTTCGATTGCGGAAGAAAACAA 78504 37 100.0 38 ..................................... TCTGGGAACCCTGGACGCGTGATCGTACCCGGAAGTAT 78579 37 94.6 0 ........................G.A.......... | ========== ====== ====== ====== ===================================== ====================================== ================== 12 37 99.3 35 GTTTCTTCCTTTGTTCGCAAAGGAAGCGGATTGAAAC # Left flank : TGAGTTCGGCTGAGTAAATATTTTTATAAAAGTATGAGTTCCTACAATTTTAAAAATTGTTTGTAATATCTTGATTTGTGAGAGTTCCCACATCACTTTACTGACAAACCTAAATTTTGTAATAGTTCCCACATTTAAGGAATCGATCTGTAAAGTTCAAATTCCAACTTTTTAGAATCATAAGTTCCTTACGCCAAACTCACGTTATATTACAATGATTCAAAACCAAATATTACGTCTCTTTAGATATTTAAGAATAGTTTATTTTTGTTATATTATTGACCTTTAAAATCCGATTATTCTATAATAAAACGCTTTTGCGAACCCGTTTCTCCCGATTTTACACGGGACTTTCGCACCAAACGTATACACGTCGTTTGGCGATTGAATGGTTTTGCTTAACGTTTATTCAGTATGGCACATACAGATTCGCAATTATTATGTCTAGAAAATGCTATTAACCTTTTTCTTATACATCTTTGCGGGGCTTTTGAGCCGCT # Right flank : CTAAATGCGTCAGCACTGACGCATTTAGTTGGTCTGCTTCTTCCTTTATTTACAAAGAAAGAAACAAAAAAGAAATATGATTCATTCCTTTAACGTGAATTCGATGTAATCAATGTAAAAACAATTGAGGCGAGAACTCAGTGTTTCATAGACAGGTCTTTGTTTAGATCACGCTCTAAACTCAAACCCTCAGGAATATTTTTTATATCCGATTTGTAAAAACAGTTTAATTTTTTAATTGTCAATTACTTGTGAGATTGAACATTCTAAATTTCAAATGAAAGTATGGCATTTCCCACAAATCATTGAGATTCACTACTTTTTCGCCGCTATAAATTTTTGTATGAGTGCTACATTCCATTTTTGTAAAAAACGAACCTTTATAAAATTACAAATTCTAGTTACGCACATTCCACATAACGACCTTTTATCTCTAAGTTAAGTATCATTTCAAATGACTTTCAATTTAAACATAAAATATTATTTTTCCTCCATCGGAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTCGCAAAGGAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.40,-8.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 1661-1266 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANIH01000026.1 Leptospira kirschneri strain CBC613 ctg7180000006867, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 1660 37 97.3 35 ...................T................. AATCGCAATCTTTTGAATATCTGAAAAAACAGCTA 1588 37 100.0 35 ..................................... ATTTAACCTGGGCCCCTTCTTACACTGGTGGAAAT 1516 37 100.0 34 ..................................... AAAATTATTTCTGTCATTAAGATTATAATAAACC 1445 37 100.0 35 ..................................... CCACTGCAATCTAATTTGTTTCCAGACGTCGTATC 1373 37 100.0 34 ..................................... GCTAAGCATATTGCTGTGTGTCTTGCTTTTTGTT 1302 37 75.7 0 A.........................AAAGAAC..G. | ========== ====== ====== ====== ===================================== =================================== ================== 6 37 95.5 35 GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAAC # Left flank : ATGTCTATAAAAGCCAATAAAGCTTTTATAATATATAATTTTTCGACCTATCAAGCCGC # Right flank : CAAAGCCAATCCAGATTGTATTCAATTCCGACAGAACCCAATTTATTTCAGTTTGAATTCTCTATGACAAAATAGCGCCCCTTCTGAACTTGAAAAGAGCGAGTTCGGCCGAGAAAAAATTCTCTAAAAGTATGATATCAGAATTTGTTCGTAAAACCGCGATTCGTGGTAGTTCCCACATTTTAGGAATCGATCTGTAAAGTTCAGATGTCAACTTTTTTCAGAAAAATGAATCATGTTCAAAGTACGTTAGTTTAAAATCAATTTTAAGGTAGATCCCCACTTTGCAACATGAACAAAAAAGTAACTACTCAGACACATGAAAATAATACGATTCTAATATTTCTTTCAAAACTTAAAATGTGGGAACTAACACAAAACAAGCATAAATTACGGAACAACACAAATTATAAGAGCTTTTACACTTTCGCAAATAATACACTGCTCATTTTTGATGCCATTTTCATAATAATTTAACATGGGTTTGGCGTAAAAGATTC # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:0, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 3160-3796 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANIH01000029.1 Leptospira kirschneri strain CBC613 ctg7180000006962, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================================================================================================================== ================== 3160 37 100.0 34 ..................................... CATGTCGTGCCGTTGTCTGTGGGAAAGGTGAAAG 3231 37 100.0 35 ..................................... AGTCCAGTAACACACTGGTCTTGAATCACGCGAAA 3303 37 100.0 34 ..................................... TTTTCTACTCCTTGCGGGTGTGGGGTTTCTTTGG 3374 37 100.0 36 ..................................... AGGTTGTGATGACGGTAAAGTTTATGAATGCGAAAA 3447 37 100.0 34 ..................................... GAATCTTGAATTGTTTGTGTGATCGCGGATTGTA 3518 37 97.3 35 .......A............................. CCTTCTGTTCGCTACGTGATCGAGATAGAAAAGTC 3590 37 100.0 134 ..................................... TATGTGGGCGGTCTTACGACCACATTTGCCTACTCCATTAGAGTGAAAACGACAAGCTATGTGACATATTTAACTAACTTTAATTTTTTGTTTTTAGTAAATTGAATCTTCTTTGCGATCGTTTTTGATGCGAC 3761 36 70.3 0 C......T..C.A.CG...-..A....A.G......T | ========== ====== ====== ====== ===================================== ====================================================================================================================================== ================== 8 37 95.9 49 GTTTCTTCCTTTGTTTAAGAAGGAAGTGGATTGAAAC # Left flank : TCGATAAGCATATATTCTGAAATACAATCCATTTAGAACAGAACTTCTATATTTTTAGAATATTCCATTATTTACTTATAATAAGGCCCTACAAATTTTAGAAACAGATTCAGTTTAGACAAAATTCTGTACGCTCTGATTCTATGGTTTCTGAATTAGTTAAGTTTTCAAGTCCAGCGCTTAGACAATCATCTCAACAAGAATGAAAGAACCCTTGAGTTAAATTTCAAAATCGATCTTTTTAGTCACAAACTGAACAATCCGGAATTCAATATTCTTGACTTTAAAACCTGGGTCATTTTATGATGAAACGCTTTTTGCGAACCTATTTCTCCCGATCCTTTGCGACCCTTTCGCGTTTCAATAGACGGTCGCCATTTGTCGATTGAATGGGTTTTGCTCAGCAATTACAGTATGTTACGATTAGGTTCGCAATTATTATGTCTAGAAAAGGTAATAAAGTTTTTTCTAATTCATAAATTGAGACTTTTCTAACCGCT # Right flank : TTAACACGGTCTTACGACCACATTTCTTACTTTGTTCGCAATGGATGGAAATCGGCATTTTAATGCCGATTGACTTACAAGTAATAATTTAACGTGAATTCGTCGTAAGAGATTGTTTGATAAAAACCTGATTTTTCCATAAAAAATCAATGTTTAAAAATTTGTAATGCGACTTGAGACTCAGAAATTCCCAAAAATCAAGTCGGTCTGGATTATTTAACTTTTTGTGGTAAATCCTACATTCTCAGTTTTTTACAAACTAGAATTTGACGTTACGCGAAATGGATCAACGCAGGGAACTTTAGCAGAACGCTCTTTCAAACCAAAGCGTCTCACTTACTGAATGCCGATCTTTAGAGAATCATTCGCTGAGTTTTCTGGATCGTTAGACGGTATCGTGTTCTATAATCAGGTGAATTAGCGCGAAAGGGATCGATGCGGGGTTAATAAATTGCGACTTAAGACGATATGTTGCATTACATTTCCTGCATGCAATTTAT # Questionable array : NO Score: 4.63 # Score Detail : 1:0, 2:0, 3:3, 4:0.80, 5:0, 6:0.25, 7:-1.42, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTTAAGAAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.70,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 427-97 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANIH01000063.1 Leptospira kirschneri strain CBC613 ctg7180000006880, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ================================== ================== 426 38 100.0 34 ...................................... TTGCACCTTTTGCGTCTATTGGAGTCGCAATATC 354 38 97.4 33 .....................................G TACAAAGTTATTACTGGGACTAATAGGGATTCT 283 38 100.0 33 ...................................... GATCTTTACTTCGTTTCCGATCTTTACTTCGTC 212 38 100.0 34 ...................................... GTTGGGAACACTGTAAATTGTGCGAGTCCGAATT 140 38 94.7 0 ..........................A........G.. | AAAC,AA [105,112] ========== ====== ====== ====== ====================================== ================================== ================== 5 38 98.4 34 GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAACC # Left flank : GATTCCGAAGAAGCACGTAAAAAAAATAGAAGGGTCAATTTTACCATTCTGAAGAAAAGTAAGTAAAACTTTTCTATATTTTAGATATTTAATGTGAGTTGTTGAAAAATTCCATAGTGGCGATTCGTAAAATTGCTTCAATTGTCCATTCCAATCAGATCAAGAATTAATTTTCCAACAACTCTATAATTCAAAATACGAAACACAGTGGTTTTCATAATTACGTCTCTTTAGATAGTTATAAATTTCTAATTCTATTCTTTCTTTAACTATATTATAGATTTTTAAAAGCCGATCATTTATAATGAAAACGCTTTTGCGAACCTGTTTCTCCCGATCAATCACGAACCTTTCGCACCCTTGTATTGATTCTCTGTTTGGCGATTGAACGGTTTCGCTTAGCATTTGTTCAGCATGGCAAAAGTAGGTTCGCAATTATTATGTCTATAAAAGCCAATAAAGCTTTTATAATATATAATTTTTCTACCTATCAAGCCGCT # Right flank : CAATCTAGAATAAAGTTGTTGAAAAATGAATTCTTGATCTGTTTCTATTTCATGGAAACGAGCAATTGAAATAGTTTTGTTAAACGCCACTATGGAA # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : NA // Array 1 8729-9263 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANIH01000070.1 Leptospira kirschneri strain CBC613 ctg7180000007010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 8729 37 100.0 32 ..................................... AAAATATCCTTCGTTTTCGGAATCTTCAGTTT 8798 37 100.0 34 ..................................... CTTATCAAGCAGTCCCTCTTCGACCAGCATAAAA 8869 37 100.0 35 ..................................... TCTGGCTTGATCGGCATTTTGCGTCCTCGAATTAT 8941 37 100.0 35 ..................................... GGAAGATAAAGCACTTGAGCGCTTTGATTCGATTG 9013 37 100.0 34 ..................................... CTGCTCCGGTGCGCGTAACCGTAAGGGCCGTGTT 9084 37 100.0 35 ..................................... TATCGAATCGGCCTATAGGAGTTCCGTAGGAGACC 9156 37 97.3 33 ..........................T.......... CTCACGTTTACGGATTTAGAATCAGATTGGGAA 9226 36 75.7 0 ..........A..G...G..G....TT...A.-...G | CC [9251] ========== ====== ====== ====== ===================================== =================================== ================== 8 37 96.6 34 GTTTCTTCCTCTTCTTTAAGAGGAAGCGGATTGAAAC # Left flank : TTATAGAGAATTTTATTAGGTTGTTTCAAAACTAAAAACTTCGCGAATGTTTACCGACGAGTCAGTCTATTTTACTGAGTTTAAATTCAATTGTTTTTGAATTGATCCTTTCAAAATCTCTAAAATTCGTAAGACCTAAAAAACATTTTTTTAAAATTTTGATTTGAGATAATTTCTAAAGAATTCTTCCGTTTCTTTTCCGAAAATTTCAGTTAGGTGAACATTGACTCATTTATAGTTTTAAATCTATTTTTCCTGGAATCCTATTATAAGTTTTTGCCTTTGATTAGCCGATCTTTTACAATGAATTGTTCTTTGCGAACCTGTTTTTCCCGATCAATTGTGGATCTTTCGCGCTCTTGTATAGATTCGTTGTTTGGCGATGGAATAGATTAGCTTAACAATTGTACAGTATGGTAAAAATAGGTTCGCGATTATTATGTCTAGAAAGCTTAATAAAGTATTTTATAATACATTATTTTCAGTCCTATCAAGCCGCT # Right flank : GTGTCTAAAATTTTGTTCCTGAAACGGAGATACTTTTCAAAAGTTATGATACTCTAATATATGAGAAATGACTAATCGATAGGAATTGATTGCTCGGAACAATAATTTCTAAGTTTTGTGAGAGCTCCCACAATTTTAAAAAATTGGAATGTTTTGTATATCAAACACTACAGGTTTTTATTTAACATAAATTCGAAATAATAGAAATTAGGAAAAATCTATTCTAAAAATAGGAGTTCCTTTTTATTTTTACGGACCAAAGTTTCTCTTTCGGAGAATATCTGGTTTGGTAAATTCTACCATGAAAATTGAGTATTCGTGGTGGTAGTTCCCACAAATTAAGTCTTTTTGTGAATGTATAGGTTTTAAATGCATTTTAACGTGAGTTCGACGTCATAAAATCGGGGTGAATCCTGAGTCGTAGACCGCGCTTTCCGCTATAGTTAATAAATTGTATAAAAAAACATAATATGATATTTCGTCTTAAGTTACAATTGATT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTCTTCTTTAAGAGGAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.80,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 1 56-384 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANIH01000072.1 Leptospira kirschneri strain CBC613 ctg7180000006952, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 56 37 100.0 35 ..................................... CTTGCACCTTTTGCGTCTATTGGAGTCGCAATATC 128 37 100.0 34 ..................................... GTACAAAGTTATTACTGGGACTAATAGGGATTCT 199 37 100.0 34 ..................................... CGATCTTTACTTCGTTTCCGATCTTTACTTCGTC 270 37 100.0 35 ..................................... CGTTGGGAACACTGTAAATTGTGCGAGTCCGAATT 342 37 94.6 0 ..........................A........G. | AA,ACAA [368,373] ========== ====== ====== ====== ===================================== =================================== ================== 5 37 98.9 35 GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAAC # Left flank : TATAAAAGCCAATAAAGCTTTTATAATATATAATTTTTCTACCTATCAAGCCGCTG # Right flank : CCAATCTAGAATAAAGTTGTTGAAAAATGAATTCTTGATCTGTTTCTATTTCATGGAAACGAGCAATTGAAATAGTTTTGTTAAACGCCACTATGGAATTTTTTTCAACAACTATAATTTTGAAAAAGTTGGGATCTGGACTTTGTAGATCGATTCTTTAAATGTAGGAACTACTGCAAAATTTCGTTCGGAAAAGTATGATTTAAAATCGCAAAAAAGATAAAAAGAGACGTAATCTGTAGGAACTACCACAATTTAAAAAATAGAAGTTTATAACTTATCGTATTCAAGTGTGGAACTACTGGTAAATCCACGATTTGTATGAGTTCCCACATTTTTGAGACCAGAAATAGGAAAGGTTTAGTAGCTTCTATCCTCTGGACGCGAAATCGATACGAGGGAACTTTAGCAGAACGTTCTCTCAAATAAAAGACGAGATATTGTATTAGGTTTCTTTTATGAAATTTATTGACTGGAGCCAAAAGCACGGTCCTGCAAAG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.20,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : NA //