Array 1 422701-425333 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWST01000001.1 Wohlfahrtiimonas chitiniclastica strain 20 scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================================================================== ================== 422701 27 75.0 174 .......ATG...A.C...-....T... GGTTGCGCGGTTGCAGGTGCGATTGAGCATGCGAATACTTAAGACCTTTATGGACTAATCTTTAAAAATTTGGATAAATATCAGTGAATTACATGTTATTGGGAAAAGATTGGTTTTGTGGTCAAATATCAACAAAACCATAATGATTCCAATGGCATTGTGATAGTTTTTACT T [422705] 422903 28 100.0 32 ............................ TCTGAGAAACCTGGCGAGCTTTCTGAGCAACA 422963 28 100.0 32 ............................ CGATAGGGCATAAACATGGGGCTATCATCCAA 423023 28 100.0 32 ............................ TAAAGATATTGCATTGCCATTTCTGTCATCGT 423083 28 100.0 32 ............................ AATGAGCAAAACGCCGCCCCAATTGGCACACC 423143 28 100.0 32 ............................ TCATCAACAGTTCCTTGAGAAGCATTATAAGG 423203 28 100.0 32 ............................ ATCAGAGCCAATTTTATTATGAATGGCAAAAG 423263 28 100.0 32 ............................ GTCATACCTTGCGAACCATGAATTGTAGTGGC 423323 28 100.0 32 ............................ GCGATCGTTTATAAATTCGTATTTACTCAATG 423383 28 100.0 32 ............................ TAATGCTTTGTGAAATGCATCCGCGCGTTCTG 423443 28 100.0 32 ............................ TAGCAGGTGTACTGACCGAGTTTTTAAGCGGC 423503 28 100.0 32 ............................ TCTTAGTTCATTGATTTCAATAATGGGTGTAC 423563 28 100.0 32 ............................ TTATCAAGAATAAACATATTAATTTTTCTTGT 423623 28 100.0 33 ............................ ACACGATAGAAATCATAATCGGTTTCCCCGTAT 423684 28 100.0 32 ............................ TTAAAAAAAACAAGCTTTCAGGTGTTATTTCT 423744 28 100.0 32 ............................ ATTCCTTTTGGCTCAATCTGATTTTTATTTCT 423804 28 100.0 33 ............................ CGAAAAAAGCAATGACCGTGTCGGCATTATAAA 423865 28 100.0 32 ............................ TTGTGAATATTTTAAGCTAGGGCTACTAAATT 423925 28 100.0 32 ............................ ATCTTTTGTTGATCCTTCGATCTTGGTGTAAT 423985 28 100.0 32 ............................ TCTGCCGTGATTGCTGCTATTGATTATGATCG 424045 28 100.0 32 ............................ ACGATCACGCAATCTATAGCGCTGACCAAGTG 424105 28 100.0 32 ............................ TTCACCGCTTTATCTTCCGAATAAGATAAGCT 424165 28 100.0 32 ............................ ACTTGATATAAGAAATGTTACTTGCCCAAAGT 424225 28 100.0 32 ............................ TCGATCAGAAGTCTCAAAAGAAACCTTTATAG 424285 28 100.0 32 ............................ AAAAGCGTTGGTATTACTGATCTCGTAAAAAT 424345 28 100.0 32 ............................ ATAGATATTTCCAATCACTTCTATACTGTCTA 424405 28 100.0 32 ............................ TGCTAAATCACCTGTCATGCGCAACACTCTGT 424465 28 96.4 32 .............T.............. TCCGCTCCATAATCCCCCCTAAATACCCTGTT 424525 28 96.4 32 .............T.............. ATCAAAGGATGCTGCAAATGCATTTGCAGCCG 424585 28 96.4 32 .............T.............. CGTCTTTGTTTGATCGGTCAATGATAGATAAG 424645 28 96.4 32 .............T.............. ACGACCCTAGGAGGATGCATTTTGCATAGTTG 424705 28 96.4 32 .............T.............. TCCTGCCATGTGTCTTTCCACGGTCCGCGGAT 424765 28 96.4 32 .............T.............. AATCTAACGCCTGCCGTCACGGGTTTTGATGT 424825 28 96.4 33 .............T.............. GCCGAGAATTGCCGCGCTTGTTGCTTCTTCGCT 424886 28 96.4 32 .............T.............. TCCCATTCAACAATTAATGCAATATCTACACC 424946 28 96.4 32 .............T.............. TTTAGATGTTGCCGTCAATGTTGCCATGCCTG 425006 28 96.4 32 .............T.............. GTGATGGACAAGGCATGAGCCAAAGAGCATCT 425066 28 96.4 32 .............T.............. ACTTTAATCAGTGGGCTTTTTTTACGTCATTT 425126 28 96.4 32 .............T.............. ATTAAGCAACACGATTACGCCATCATTGTGGT 425186 28 96.4 32 .............T.............. ACTAGCTCAGCATCATCACTCATTGCTGCATT 425246 28 96.4 32 .............T.............. ATACTTTTCAATCACTCTTTTTGCCGCTATAT 425306 28 92.9 0 .............T......T....... | ========== ====== ====== ====== ============================ ============================================================================================================================================================================== ================== 42 28 98.0 36 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ACAAAAAATCTCTGTGCGTATCGTCAATGAAGTTAAACACGTGAACCGCATTGTGTATGACATCACAAGTAAGCCACCTGCAACGGTGGAGTGGGAATAATTTAGTTTCCACGCATTGACATGAACATAAAAAATGGCCTAAATAAATATTAGGCCATTTTTTTTAATGATTTTTAGGAGAGTTGAATGAAAAAATTATGGATGATTACAACCATTATGGCAGTTTTAACAGGTTGTGCTTCTGTTGAGCAAGATACCGTGGTGCATGATTTTACTGCATATGGCAAGCTCAATGAGCCTTGGCGTATCGTGGTCAAACATGATGATCAGTTAGAGATTGAAGGGGTAATGGTTCGCGAGGGCACATTGAAAGTGACGCGATCGGCATATGCAAAAGGTGTTGAATTCTCAGGGGATTATGATGGGCAGCCATTGACATTAAACATCCGCTCATTGAAGTGTAAAGACAGCAATGGCGATGAAACAGACTTCACTGCCAC # Right flank : AGACCGGAGCTGTGCCATCGTAACGGGATTATGAACAGACAGTAAAACTAATTCGTTAAGTTACTCACCATAATACGCCCAAAGCAGGACAGGTTTTTTCTTGGTTTGTAAAAGCTTGTCCACTTTGCGCATTGTGTCATCATCCACAACCGGGCAGCCTTGACTGAAACCTAAAGGCAAATAGTTTGGGAAAGTTTCTTCATTCGGAATCATCTTAAAAGAGTGGAGCACAATGTAACGCTGAAAGGCATTGCTGTTACTCGCCTCTAGTCCATGGAGTTTGTAGTGAATGCCAATTCCCCATTTGCTCGGTGCGCGGATGCCCACACGGTATTTACCGAGAGAAGATGCATAGCTATTCGGTTGATTGCTAAAGACAATGTTTTGATTATCACTCTCAAAGCCCACATTGCCATAACCATGGGCGACGATGCTTTTGATCTGCGGTGATTGTGTTTTAAAATTCCACACAAAAAAGCGATCTTTACCGGAATGGCGCG # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.31, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 548562-560838 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWST01000001.1 Wohlfahrtiimonas chitiniclastica strain 20 scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 548562 28 100.0 32 ............................ ATTAAGTTGCTCTCAATAGCGTTGTATAAACG 548622 28 100.0 32 ............................ GCCTGCATCATGTAGCATCCATTGATGAATAA 548682 28 100.0 33 ............................ ATCCCTGCTTCATCTAAGACGATTACAGTATCT 548743 28 100.0 32 ............................ TGATAGCCAAACAGAGTTCAATATTTATCTCA 548803 28 100.0 32 ............................ ATCTAAAACCAATAGACCGCCTGCATCATGTA 548863 28 100.0 33 ............................ CGTAAAAGGCAAGATCAGCGATGCTAATTTCAG 548924 28 100.0 32 ............................ TTATTTTATTTTAATGGCAACGACAGAAGCAT 548984 28 100.0 33 ............................ ACTTTCTAAGCCCGTTTTTATTTATTGTACTTT 549045 28 100.0 32 ............................ AAAATGAGTCTTTGCTATCTTTAGATTCAAAT 549105 28 100.0 32 ............................ ATTTCTGTCATCGTTCACTTGGAACACTTTTC 549165 28 100.0 32 ............................ GTAAAATCTTTGCTGAGGGCAAATTACTATCG 549225 28 100.0 32 ............................ ATCACCCAAAATAAGATTGATTTTAACTCTAA 549285 28 100.0 32 ............................ TCTCGTTGCATCATCAATATTAAAGCCATTGA 549345 28 100.0 32 ............................ TAGTGATTTGTACTTTCACAACTTAGATAAAG 549405 28 100.0 32 ............................ TACTTCTGATGGTGCAAAATGATCTCTTCTTT 549465 28 100.0 32 ............................ ATATTTTGATGTGAAATCGGCTAGGCTCACAC 549525 28 100.0 32 ............................ ATTAAACTTTTTACAGGCTTTAAATTTGGTTT 549585 28 100.0 32 ............................ TTATTTTCTAAATATTTCTGATAATCAGCTTC 549645 28 100.0 32 ............................ TTGTTGAGAATGAGAATAATGATCCGAATTTG 549705 28 100.0 32 ............................ ACCCGTAAAATATGGATTTACTTCTTATAAAT 549765 28 100.0 32 ............................ ATAATGGTATTTCAATTTTTACTGATGTAATT 549825 28 100.0 32 ............................ ATCTGCAACTTTGGGTATAAATTTAACCTCAA 549885 28 100.0 32 ............................ ATAGGATAGCCAACTTCTCTATTCCATTTTTC 549945 28 100.0 32 ............................ GATTGGTCTAACGCAAATATCAAGCTTCGATA 550005 28 100.0 32 ............................ ATGGAATAAATCAGTTAGATACCCAAAGGATG 550065 28 100.0 32 ............................ TTTAGATAATCGGGTCAATGATTTAAGTGATG 550125 28 100.0 32 ............................ AATATGGATTGGCGTTATGTTTTTGATGCCAT 550185 28 100.0 33 ............................ CACTCATAGTTATATTTTTCAATTTTTTTTATT 550246 28 100.0 32 ............................ ATATTGCCCGATAGGGCATAAACATGAGGCTA 550306 28 100.0 32 ............................ TTACTGTTTGCACGCTCAATAGCTTTCTTATC 550366 28 100.0 32 ............................ TGCCCATCCAGATGTTAGCCACAGCGCTAAAC 550426 28 100.0 32 ............................ ATCTGAATCAATACCCAATGCAGTTAGACCAT 550486 28 100.0 32 ............................ ATATCATTAAGCCCAATAAGCAACTGCCCACT 550546 28 100.0 32 ............................ AACAAAATCCTGAAACTCTTTAATAATTAAAT 550606 28 100.0 32 ............................ GCAATTCAAAGAGGCAGAGGAAAGCGTTTTTA 550666 28 100.0 32 ............................ ACAAGCCCGCCCGTGGCGGTCACCAAACCATC 550726 28 100.0 32 ............................ GGGCGGCTTTCTAAAGGACAAGACATGGAACA 550786 28 100.0 32 ............................ AAACGGACGCGTTGAAACGCAGGGCGAGCGCA 550846 28 100.0 32 ............................ GCCCGCCACTACACCCACGCAGGCCCCACCTA 550906 28 100.0 32 ............................ ACAAAGGGCACGCTAGATTGTCAAATGTTGGC 550966 28 100.0 32 ............................ CAAGTTTGATAAATGGAGATTTATCTTTTATT 551026 28 100.0 32 ............................ ATCGTTTAATTCATGTTCTTTATTTTCCATAT 551086 28 100.0 32 ............................ GATTGTAAGTAACTTAGGAGATAATATATCTT 551146 28 100.0 32 ............................ ACTTGCAAACTTCTTAGCGTCAGAGGACAAGC 551206 28 100.0 32 ............................ CATTGATCGCACACCAGGGATGGCAGCGCAAC 551266 28 100.0 32 ............................ GTTTTCATCTGTGCGATTGATCATTACTTCAC 551326 28 100.0 32 ............................ AGTGCTTGATGATTTATAAAATTCGCTTTTGC 551386 28 100.0 32 ............................ AAAGTCCATAAGCTATCGCAAAAAAGGCAATT 551446 28 100.0 32 ............................ GAGCCGAAAAAGCCGAACACGTTTGATGAATC 551506 28 100.0 32 ............................ ATATGACGTTGAATCGCCGTCAAAGCCAAATG 551566 28 100.0 32 ............................ ATTTCAAATCGGGGATGCTGACGATAAAGAGT 551626 28 100.0 32 ............................ AACTGAGAAAACACCTAACTTATCATCTTTGA 551686 28 100.0 32 ............................ AATAGTAGGAGCGTATCATCATTGGATGATAC 551746 28 100.0 32 ............................ AAACAAAAATCTTACTGAATCAACGATATTGC 551806 28 100.0 32 ............................ CATGGAAGCAGTACCCAAGTAGAATGCTTAAA 551866 28 100.0 32 ............................ AATGCCCTTAAAATTGAACGCTCAGTTCTCAA 551926 28 100.0 32 ............................ AATAGTAGGAGCGTATCATCATTAGCTGATAC 551986 28 100.0 32 ............................ ATCAACATTGACTGCTACATAACACATGCATT 552046 28 100.0 32 ............................ ATAGATATTTTTTCCCTCTAAGCGGCAAGGGG 552106 28 100.0 32 ............................ ATCATCGCAGCAGCGGCGCCATTTATTGCGCT 552166 28 100.0 32 ............................ GATGCATTTCACAAGGCTTTAAGTGGAATGAA 552226 28 100.0 32 ............................ TCTTTTCAGAGGCTATTTTATAAAACTAGCTC 552286 28 100.0 32 ............................ ACCTAAAGCTGTTAGCTCCTCTTCTTTAATAC 552346 28 100.0 32 ............................ ATGTACCGTAGTAAAAGACAATGTGCTTATTA 552406 28 100.0 32 ............................ TTGCTAGGCGTCTTTCTTGCCGCTTCAGTTAG 552466 28 100.0 32 ............................ GCTCTTTTTTTCGTCTAAAGCAAAGTAAAAAC 552526 28 100.0 32 ............................ AAAGGCGTATCAATTGATCGTCAATGACATCA 552586 28 100.0 32 ............................ AGAAACACATAGATTTGATGTCACATCATGCT 552646 28 100.0 32 ............................ AAATGAATACATCGGTGGGGATTCAAGCGGTT 552706 28 100.0 32 ............................ CTTAGAATTGATAATCTTCTGGCTTGTTCGGC 552766 28 100.0 32 ............................ TACAAGATCAGGTAAAGGCGTTGGTATTGTTA 552826 28 100.0 32 ............................ TCATGATTGCTAGCGTGCTCCTTGCTGCACGT 552886 28 100.0 32 ............................ GCAAGCCATGCCGTCCAAAGCCGCTTGCGGTT 552946 28 100.0 32 ............................ GCTTTCATGTGTAATCATAGTGACCAGGTTAG 553006 28 100.0 32 ............................ ATCCTAGAACGGAACTTGCTACTTTATCTAGT 553066 28 100.0 32 ............................ TCAATAGATACTACCGTAATCTCGGTAGTTTC 553126 28 100.0 32 ............................ AAGCGGCTTCACGTTCCTTGATAAAAAATACA 553186 28 100.0 32 ............................ TGATGGATTGCTTGAAGAATACGGGGTTTTAG 553246 28 100.0 32 ............................ AAAAGAAGTTAATAGCGATAAGCCATCATTAA 553306 28 100.0 32 ............................ ACAAGCAAGGAGAGCTTTTGAGATTGCAGAGC 553366 28 100.0 32 ............................ TAGCAGGTGTGCTGACAGAATTTTTAAGCGGC 553426 28 100.0 32 ............................ TTTACTCCTTTTTTTGTTTTTTTAATAATCAT 553486 28 100.0 32 ............................ AATTAGTTTACGGGTGGTAAGTCTGATTTGTC 553546 28 100.0 32 ............................ ATCATTGGATGGTAGCCCCGTGTTTATGCCCT 553606 28 100.0 32 ............................ TCTTAATTGAGGCTTTTTTTTCGCCCGTTTTA 553666 28 100.0 32 ............................ GAAAAGCTTGGCATTGATGAATTAAAGTCTTT 553726 28 100.0 32 ............................ TAAGAATAAAGAAGTTTCAGCAGAAGAGAAGC 553786 28 100.0 32 ............................ GCATTTTTTGTTTCGTACGTTACAAAAATATT 553846 28 100.0 32 ............................ TACCATCTTTTAATTCAACACCTAAAGATATT 553906 28 100.0 32 ............................ TTGATAATTTGGCTGGTGAATGGCTAAATCTG 553966 28 100.0 32 ............................ TTTCGATTGTTTTTCAAAAGATTTGCGAATTT 554026 28 100.0 32 ............................ ACACACTATTTTGGTACTTCACACACACTATT 554086 28 100.0 32 ............................ ACCACATGAACAAGGATATGTTTTTACTGGCA 554146 28 100.0 32 ............................ TGCGTATGGATAACTTTAAAGCTCGCGTACTG 554206 28 100.0 32 ............................ TCTAAAACAGAGTGGCATAATGTTGTTATTTT 554266 28 100.0 32 ............................ TTTACCGTTGCATAACACCGTATGCGCACGCG 554326 28 100.0 32 ............................ TCTTCGTTTTCGCACTTAAATACTGAGTAGCT 554386 28 100.0 32 ............................ TCGAAAGGGGTATTGAGCTGAGTTGTTATAGG 554446 28 100.0 32 ............................ GGTGTCAGTCATCTTTGGAATGCCAATCATGC 554506 28 100.0 32 ............................ AATGACACACAAGAGCAAGATAGACAGCGTGA 554566 28 100.0 32 ............................ CTGCTACAGCCTTACCATTTGCATCTACATCT 554626 28 100.0 32 ............................ ATCTAAAACCAATAGACCGCCTGCATCATGTA 554686 28 100.0 32 ............................ AAAAGCGTTGGTATTACTGATCTCGTAAAAAT 554746 28 100.0 32 ............................ TTGATATTCTCTTCTAGCGTTTCCCGATCAAT 554806 28 100.0 32 ............................ GTTATTGCTTATCACGATGTAGAAAATGTGGG 554866 28 100.0 32 ............................ ATAATTGAAAGAGCTTCTTTGTTTATTGCATC 554926 28 100.0 32 ............................ TGTTGGATCTCTTTTATAATCTCTCAAGTGTT 554986 28 100.0 32 ............................ TAATCAAAAAATGCCTAGGGGAGCTATTCACT 555046 28 100.0 32 ............................ TGCCGATATTGTGAAGCTAATCGAGGGCTCAG 555106 28 100.0 33 ............................ AGAAAATATTAAGCAGATATATATCGATAAAAC 555167 28 100.0 32 ............................ TACAGGCAAGCAATTTGATCCGCAGTTAGAAA 555227 28 100.0 32 ............................ GTTATTTTCAAGCTTGCCGTTGATCGAAACAT 555287 28 100.0 32 ............................ TATTTCAGGCGCGAAAGAATTGCAATTTGCAT 555347 28 100.0 32 ............................ CTATTTGAATCTGTTTTGATTGTAATCATGTC 555407 28 100.0 32 ............................ GCTTTTTTTGCCAACCCAATAAGCGACTTGGT 555467 28 100.0 32 ............................ ATGATGCCTGCAAAGTGACCTTTACCACCTGC 555527 28 100.0 32 ............................ CAAGGCTTTGTGGAATGCATCCGCGCGTTCTG 555587 28 100.0 32 ............................ AACAAAAATATCGAACATTTGAATAGCGCCGC 555647 28 100.0 32 ............................ AGTAGGGTTCACTTTTAAAGACAAGAAATACA 555707 28 100.0 32 ............................ GCGTCCTTGCGGCGTTGATGTTCGCTTTGTTG 555767 28 100.0 32 ............................ GCGTACTAACGGCACTTGGTATAGATGGGATG 555827 28 100.0 32 ............................ ACCACACACATAACAGCTGAAAGAGATAATAT 555887 28 100.0 32 ............................ CATCCAATTTGTTAATGCGTCTAAGAATACAC 555947 28 100.0 32 ............................ TGCGCGACATCGCTAATGATGCCGCTTTCATT 556007 28 100.0 32 ............................ TTTAACACTAGTGTAAATATCGCTCAACAAGC 556067 28 100.0 32 ............................ CGGTTAAAGCCGGTGATTTCGGGTGGATCAAG 556127 28 100.0 32 ............................ TGTATCCGTCATCTTTGGAATACCAATCATTC 556187 28 100.0 32 ............................ TAAAAAATCAGGGTTGTATATCACGCATCTAG 556247 28 100.0 32 ............................ TAGGCTTGATGTTTTCTTAGAATTCGGTATTG 556307 28 100.0 32 ............................ TAACGGTGTTACTTATAGCGTTAAAAATTTAG 556367 28 100.0 32 ............................ TTAAAATTTCATCTCTTTTATAAATTACTTCT 556427 28 100.0 32 ............................ GGAGACGATTCAAGGCGTCATTGCGACAATGT 556487 28 100.0 32 ............................ CGCAGCAAAGGAGGCTATCATCATTGGATGAT 556547 28 100.0 32 ............................ TCTTGCACTCTAGCATCATACTCTGATGCAAC 556607 28 100.0 32 ............................ AAACAGCAGTTAAAGCCTTTGCTAAGGGGTAT 556667 28 100.0 32 ............................ TGAGTAGCAAAGCTTACCAAAACAGTTAAACC 556727 28 100.0 32 ............................ ATTTTAAATTCCCTTAAATTAAAATTATAATT 556787 28 100.0 32 ............................ GCAATAATTAACGCATTTACCTCTGTATTAAA 556847 28 100.0 32 ............................ TAAAGAAAACAAACCTCCCAAGACCATTACAG 556907 28 100.0 33 ............................ CTATCGCTCAAAAGCTATTTAACACGAAATCAA 556968 28 100.0 32 ............................ AAGACATTGTTAAAGAGTTAGATGCAATTTAC 557028 28 100.0 32 ............................ CTGAGAATAGTGTTGTTTTAGAAGGGGGTACT 557088 28 100.0 34 ............................ TGCTAAAAAAATACTCTGAATCTTTGTCTGTGAT 557150 28 100.0 32 ............................ AAAAGAGAGCTACAAAAGCGCAGCAATGATTC 557210 28 100.0 32 ............................ ATTAAGTTGATGGCTGAAATCTCGTCTACAAT 557270 28 100.0 32 ............................ GCTGCATAACACTGTATGGGCGCGCGTGCCCG 557330 28 100.0 32 ............................ TGCCGCGACTAACTGATAACCCGTCATGATTA 557390 28 100.0 33 ............................ CTGATGAGCGCTGACTTGTGACATCGACCCATT 557451 28 100.0 32 ............................ TCTATGAAAGATGCTGAATCTGAAAATGTTTT 557511 28 100.0 32 ............................ TTGAGCTTCTGCAAAAGAAATTTGTGATCCAT 557571 28 100.0 31 ............................ TTATTCAAAATTGAAATTAATGAAGCGTATG 557630 28 100.0 32 ............................ TAATGCATCGTTCCATTCTTTGGTCAATGTGA 557690 28 100.0 32 ............................ GTTAGAATTGATGGGTTAGGTACGGATAGTTT 557750 28 100.0 32 ............................ ATTAAAAAAGGTATTTATATAATCAATTAGCT 557810 28 100.0 33 ............................ CTTACAAAGCAGGCTCTAAACTTCGTAATGTTC 557871 28 100.0 32 ............................ ATATTGAGCCATTATTTTTTGAGCCTGAATAA 557931 28 100.0 32 ............................ TGATTTTGGTGCAATGATTAATGAAGCAATGA 557991 28 100.0 32 ............................ AACAAGAGGAGATGACCAAAGAGTTAGAGAGC 558051 28 100.0 32 ............................ AAATTAAGATTATAACTTGCGTTAATAAGCAC 558111 28 100.0 32 ............................ ATCAAGTATAATTATTTAATCTTTTTTAAACA 558171 28 100.0 32 ............................ ACCTAAAGCTGTTAGCTCCTCTTCTTTAATAC 558231 28 100.0 32 ............................ ATTAGCTCTGTTTTCTTTTCTGGCGTAATGTC 558291 28 100.0 32 ............................ ACGGCGGAGCTGATAGCGATATCGCACACATG 558351 28 100.0 32 ............................ TTTTAATAAAAATTGTCAGCACAAAACGTATT 558411 28 100.0 32 ............................ ACAAGTTGACGGTGTGTTGAGTGGCAAATATC 558471 28 100.0 32 ............................ ACCAAAGCTTTCATCAAAAACACTTGGCTTTG 558531 28 100.0 32 ............................ AATATTATCAGCGCCGTTTTGAAGCATATTTA 558591 28 100.0 32 ............................ AAAATAGTGTGTGTGAAGTACCAAAATAGTGT 558651 28 100.0 32 ............................ ACTTGCCCATAGCCTTGGCATGGATAAATTGC 558711 28 100.0 32 ............................ TGAATAAACGCTCTTTCAGCTTCATGCTCATT 558771 28 100.0 32 ............................ TGAGGTAAACAGTATTGTTTTCTTGAATGACA 558831 28 100.0 32 ............................ ATGTGAAAATCTAGGGCTACCATCTTTGCCTT 558891 28 100.0 32 ............................ AAGCACACGTCACGCGCGAACTTGAGCGCCTA 558951 28 100.0 32 ............................ CATCTTTAAAGGGCTTCCCATTTGAAGTATCA 559011 28 100.0 32 ............................ GGTTAGTGGATGGGCGGCGATGATTCAATGCC 559071 28 100.0 32 ............................ TTTTAAGCCCGTACCTGTGATATTGCCTTTGC 559131 28 100.0 32 ............................ TAGCGAGCTAACGCCAGAAAAGCGGAAAGAGG 559191 28 100.0 32 ............................ ATTCCTCCCTAATTTCTTTAATGTCATCCTGT 559251 28 100.0 32 ............................ GTACAGATAAAACTCGTTCATTTAATCATCCT 559311 28 100.0 32 ............................ ATGTGGGGCAAAATCGCCGCAAAGGCGACTTT 559371 28 100.0 32 ............................ AACCCGCCGCGAATCTATCGCCGCGTATATCA 559431 28 100.0 32 ............................ ACCTTCGCGGTAGGCGTGACTATTGCGCCAAA 559491 28 100.0 32 ............................ CATCGCAGAACTTTACCACGCGTTCACCATTG 559551 28 100.0 32 ............................ AATTGCTGAAAGGCGCTGATCATTCTCAGCAT 559611 28 100.0 32 ............................ GAGTTAATGGGGCGATTGACATCAATGCGCAA 559671 28 100.0 32 ............................ CTTTGTAGCCATCGAATGTAAATGAACCTGGC 559731 28 100.0 32 ............................ AATTTTTGCCCTGCGCACGCGCGCGCGATTAT 559791 28 100.0 32 ............................ TGCAAATTATCAATGGGTTGAGATGAGAAAAG 559851 28 100.0 32 ............................ TCATGGTTGCTAGCTTAGAAGCATGTTTTCAG 559911 28 100.0 32 ............................ GTCTCGAACGCGTGATCAATTAATTCTTTCTT 559971 28 100.0 32 ............................ ATTCGCTTTCATTGTACTCATCAATTTTTGAT 560031 28 100.0 32 ............................ AACTGCTCCAGTGCGCCCAGGTTCGCTTATGA 560091 28 100.0 32 ............................ GCACGCGCTTCCGCTTCTGTTTGCATAGAATT 560151 28 100.0 32 ............................ AACAATTGGAAAGCGCAGGCAGATTGGCAGGT 560211 28 100.0 32 ............................ ACTGGAAGTCAGTTGGGGAGCTGGAGCGGCTA 560271 28 100.0 32 ............................ AAGTAAAGAGCGCCACTTTATTAACAACACTG 560331 28 100.0 32 ............................ CAGCCATTGTGACTGCTGCGCCAAATGCTTTC 560391 28 100.0 32 ............................ TATGGGGTTGCAAAGCAGTCGAAAGTTGAATA 560451 28 100.0 32 ............................ ATGAACCCCTTTTCGTTCTGCTGGCGTGGCGT 560511 28 100.0 32 ............................ TTTTTAATGCTTTCGTTCAAATTTGCGCCACT 560571 28 100.0 32 ............................ ACTTCTTGCGCTTCTTCGTAATCTTCATAGCT 560631 28 100.0 32 ............................ AAAAAGCGGTGAATACTACTGGTGATAAGAAC 560691 28 100.0 32 ............................ GATCCTGCGACAACATGCTCTTGTGTTGAACT 560751 28 100.0 32 ............................ ATACTCGCATACCAAGCTGATAGTGGTCAATG 560811 28 96.4 0 .............C.............. | ========== ====== ====== ====== ============================ ================================== ================== 205 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TTGAATGCAGGTTTGTGGCTGTCACGCTTGACGGATTATGTGCACATTTCTTCTATTAAGCCGGTGCCCAATCGTGTGACGCATTATGCGATTTATCAGCGTAAACAGGTCAAAAGTAGTGTTGAGCGTTTAGCGCGCCGCTATGCTAAGCGTAAGCATGTGACATTTGAGGATGCCATGGCACATTTGAATGGCAAAACGCCAGAATATTGTGATTTGCCTTATGTTCAGATGAAAAGTGAAAGCACGGATCAACGTTTTCATTTATTGATCCATAAAGTAAAAGTGACAGCCCCAACGGAGGCTGCAAACTTTACAACGTATGGTTTGAGTCATCATGAACAATTGTCTGCTGTCCCTGAATTTTAACCAATGTTTTTTGCTCTTTAAAAATTTGGATAAAAATCAGTAACTTATAAAATAAGGAAAAATCATTGGTCTTTTTAGGTAAACTACCTGCGATCAGTGATTTTTCCTATCTTTTGTGCCGAAATTTTACT # Right flank : AAGTGGTTTCATGGTGAATTTGGAAAGTTTGCGGTTCACTGACTAAAAATTGAGAGTTTATAGTAGAAAATTTTCTGAGAATTTGAGAAAAAATTGCAGAAAAAATGATAAATGTTATAGTTTGCACGATTAGATGAAATACAAGCACAAAATATAATGTGCCAACAATCATCATAAGTATAAAAAAACAACATAATATATTGATATTAACGAGAATATTATGCACATGCATTTGAGTAATGAAGATCTTGATGGCTTAATTGCTGAAATTACAGCATCACAAGAGTGGATCAAAATGGCGACACACACCATTGGTCAGCAATATGATAAAGCTGCGTTAAATGACATTACTAAAAGTGTAAAAATGATCATTGGTCACTTTTTAAAAAGTGTTGGTACGACCTTTGTTTGTGTTGAAAATTCATTCATCACATCCTTGCCAGTGTTTGCGGATGCCAATAGCAATACCGGTGGCAGCACACAATGGAATAATTCAGTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //