Array 1 467479-468423 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBLB010000001.1 Klebsiella pneumoniae strain QU-37 K.pneumoniae37_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 467479 28 100.0 33 ............................ TCAAATGTGACTCTTTTATGAGGTGATTTTGTG 467540 28 100.0 33 ............................ TGACCCCGGCTGATTGGGCTATATGCAAAAGGC 467601 28 100.0 33 ............................ TGGCCGAGCTCTGCCTGACGATTACGATATCAG 467662 28 100.0 33 ............................ CAGCGTGACATTGAAGATATCAGTTTCGTCATG 467723 28 100.0 34 ............................ CACACAAAAATGTTACTCGTGACCGTTTTGTTCG 467785 28 100.0 34 ............................ CGAGGTTCGAAGGCTGGATAACCTGCCGCCGCTG 467847 28 100.0 33 ............................ TATGGAGTTGGTTTATACTGGCTGGGTCGATAA 467908 28 100.0 34 ............................ CTCTGTTGAATCCCTGATATCTGCAAATGCCTGG 467970 28 96.4 33 ..............T............. TTGTCGAAGGGCATATTGACAGAAACCCTGCTG 468031 28 96.4 33 ........T................... TCGGTGTTCGTCCGGGTAAACGTGCCGGTGAGC 468092 28 100.0 33 ............................ TTTGATGAGGAATATGTAGTTTTCCCTGGCGTG 468153 28 100.0 33 ............................ TGATCAGCGAGCTGCTGATTGATATCGAAATCG 468214 28 100.0 33 ............................ TTCCATCATCTGCGGCGGGATAGCGCTGCGGGT 468275 28 89.3 32 ............C.........G...C. CTGCAGCTGGCCGTCGAGCTGACGGATGCCGG 468335 28 96.4 33 ..............T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 468396 28 92.9 0 ...................A.......T | ========== ====== ====== ====== ============================ ================================== ================== 16 28 98.2 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTTGACGGCGCCGCGCAGGATAATAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGTGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCGGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGTCGACAAGTAACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGATATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGAATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGATGTTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 477177-478859 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBLB010000001.1 Klebsiella pneumoniae strain QU-37 K.pneumoniae37_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 477177 28 100.0 33 ............................ TGACGACGACGGCGCGATCGGCCCGGGCTCGAT 477238 28 100.0 33 ............................ TGGACGAGAACACGCTCACCGGATTCTCAAAAA 477299 28 100.0 33 ............................ CAACATGCGTTTTTGCTTCCGCCCGGTAGGCGA 477360 28 100.0 33 ............................ CATGTAAGCCTCTTTCGCATCCTCGATCAGGTC 477421 28 100.0 33 ............................ TGGTCTATATCCGTGAGCTCGCCGTCGAGCGCC 477482 28 100.0 33 ............................ TAAAAAGCCCGTTCCCGCTCCGACAAATAGGGG 477543 28 100.0 33 ............................ TGGTGCCGCCGCCGGTGGTCAGAGTTCGACTTA 477604 28 100.0 34 ............................ TTGATCGTTAACCCACTGCTCCGCGTTTTTATAG 477666 28 100.0 33 ............................ TCGCTGCGCGACGCGCGGCACTACCGGGCGGAG 477727 28 100.0 33 ............................ TCGCCGAGCGGATTTACGATACGGAGTGCCTCT 477788 28 100.0 33 ............................ TGTCGTCGTTCGCCGACGCAAAGCTTTGTCTGG 477849 28 100.0 33 ............................ TCGTGGTTACCAGGATGGTGCGCTGCAGATGAG 477910 28 100.0 33 ............................ CTGGTCGCTCCCATAGTGTGACGCGGGGAACGC 477971 28 100.0 33 ............................ CGAGTCCGGGACGCCTACGACGTGCGAGAAGTC 478032 28 100.0 33 ............................ TAAAAGGGTATTTGAGGCGTATAAACGCGCGGC 478093 28 100.0 33 ............................ CGTCGAGTACCAGCGCGGTGATCTGATGCGCCA 478154 28 100.0 33 ............................ TATGGGCTGAATGACTTCAAAGCCGGGGTTATT 478215 28 100.0 33 ............................ TAAAATCCGCGTCATCATGCCGTTCTGCTGCCG 478276 28 100.0 33 ............................ TAGTTCGCGAGGAGACGCCCCAAGGTTCACCGC 478337 28 100.0 33 ............................ CAATAGTCCGCCCGGAGGCGGCTCATTGTGTCG 478398 28 100.0 33 ............................ TAACGACACCAGGCGGCATGATCACCTATGACA 478459 28 100.0 33 ............................ CCATGGCGGAGATAGAGACACTATTGAGTGAGT 478520 28 100.0 33 ............................ TCGCAAAAGGCGTGTATATCAATATCGGCAAGA 478581 28 100.0 33 ............................ CTTCACGCCGATGGAGCGGTCTTTCTGCGTCGA 478642 28 100.0 33 ............................ TATTTCGGAGTGGCCCAACGACGCCGCCGTGTG 478703 28 100.0 33 ............................ TCCGCCGTTTAATCGCGGTGATGATATCCGGCA 478764 28 100.0 41 ............................ TGGAATCCACGACGCGCCGTACCAGCGCGGGCATTCGTTCT 478833 27 85.7 0 ......A...T.T....-.......... | ========== ====== ====== ====== ============================ ========================================= ================== 28 28 99.5 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : CTTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAGCGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //