Array 1 11705-13121 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJLM01000002.1 Campylobacter sp. RM8965 RM8965contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 11705 36 100.0 30 .................................... ATTTAGATTGAAATTATTCATTTTAATTCA 11771 36 100.0 30 .................................... TTATGCAGTTTGCACAATCTATACAATTAC 11837 36 100.0 30 .................................... TGCGGTTAGTGGCGTGAATACTGTAACCAA 11903 36 100.0 30 .................................... ACAAATATTAGGGCGAATTGCTACGGATTT 11969 36 100.0 29 .................................... GTAGGCATTATCAGCATAAGTTACCTTGA 12034 36 100.0 30 .................................... AAACTTTTCAAGAGCTAGACTATCAAGAGC 12100 36 100.0 29 .................................... TAATCTATACAATAAAAGCATAGATTTAT 12165 36 100.0 29 .................................... TGATTTATCTAAATTTTTGTTTATTTGCA 12230 36 100.0 29 .................................... CTAAATTTTGGAGCTCATCTATAATAACA 12295 36 100.0 30 .................................... CTGCTGATTGTATATCGCCTAAAAGCTCAT 12361 36 100.0 30 .................................... TTTGGCTCTACACTTAAATCCACCTTGTAA 12427 36 100.0 30 .................................... AGCATAGATTTATCAGATTTTGATGAGAAA 12493 36 100.0 30 .................................... AGCATAGATTTATCAGATTTTGATGAGAAA 12559 36 100.0 29 .................................... GATTTTTTTAGCGTTCTAAATGAAGCTAT 12624 36 100.0 29 .................................... TCTAACGCCTTATTGAATTTTATAACAAT 12689 36 100.0 31 .................................... ATATCTTTATTATCATAGATTTACTTCCGCA 12756 36 100.0 31 .................................... ACTGATAATGATTTTAGAGTGGCTGAGTTTA 12823 36 97.2 30 ..........T......................... CAAGCTTTAGGCAGTGCTGGACAAATTAGC 12889 36 100.0 30 .................................... AAAAGTATAGCTGATACTTTGCCATTTAGA 12955 36 100.0 30 .................................... TTTGATTAGCTGTTTCAATATCTTTAATAC 13021 36 100.0 29 .................................... TTGAATTAACTGATATTTTCATAGCGTAA 13086 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 22 36 99.9 30 GCTATAAGAACCCCCTTAGTTTCTATATGTTATAAT # Left flank : AATTTAAAGAACCATTTTTAGTCAGTCTCACACCAACTGGAGTATCTACTACTAAAAATATATCGTTTTTGCCAATAGCTACATCTAAAGGATTATTGGTATGCTTTAAGCCTCCTACTCCAAAATCGGTATAAACTTCATTGATATGAGGAACCCTATTTAGTGTTCTATTTAGAAATTTAGCAGCATCTTTAGTGTGATTTTCTAATGGCAAAGTATCTTTTGTCTCTTTAAATATTCTTTCAAAATCAGCTATTACTACATCATCTTTTTTATATCCGCTAGTATTTACATTAGCAAGATTATTGGTGATGATATCTAAGCGGTTAAACTGCGTCACCATCGCACCAGTCGCTTGATAATATCCGTTTTGCATTGTTGCTCCTGCGTTAATTTTATAAGCATTAAGCAAGTTGTGTTCCATATTTGAATTTTAATCATAAAAAACCTTAGTTTATATATGTTATAATCCCCTTTGATAACATAATACTTGCAAATGT # Right flank : TAGAAACTTCTTATAGATATGATTTTATGGTATTTTGATCTAAATTTTGATATCTTAATTAAATTTTAAATCAATAAACTGTATAATTAAAATCTTATAACATATAAAAACTAAGGGCATTCTTATAATAAGATCTTTTTAGATCGTAACCATTTGCCAGGTCTATCCTGGCAAAATATTCAAAATTCAAATAAGCTTTTTTCTAAGCTTAGTTTCTCTGTAGAGTTTTTTGGTTCGCCTTTTAATACTACCATATTTGCATACTGCTTTTCGGTGATTGTAATCATTCGTACATTTCCTTTGCTAGGCAATTTAGACTTTATCTTATTAGTAATGACCTCAGCCTTATCATATCCACGCACTATTCTAGCATATACAGAAAATTGCAACATAAAAAATCCACATTTTAAAAGAGAACTTCTAAATTTAGCAGCCTCTTTTCGCTCTTTTTTGCTCCCTACTGGCAAATCAAACATAACCATAATACGCATTAAAATCTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTATAAGAACCCCCTTAGTTTCTATATGTTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 96166-96420 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJLM01000004.1 Campylobacter sp. RM8965 RM8965contig00004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 96166 37 97.3 32 A.................................... CAGCAGACAAAAACAAATCAAAAATTAAATTA 96235 37 100.0 37 ..................................... TTTATTATTAAATGTTACTTGACCAGTGTTAAATGTG T [96257] 96310 37 97.3 37 .....T............................... TTTGTATTTTGGCATTTTATAATCAGTGTATTCGTGA 96384 37 94.6 0 .....T...........................C... | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 97.3 36 TATTACAAACAATATGACCCGATTTAGGGGATTGAAA # Left flank : ATCTTTAACTAGCTAATCTATTTTGATAATAAATTTAAATATAATAGTAGATTATATTTAAATTTGATTAGATGTTTAGATTCGTTTTCAAACCTAGTTGATTTGTGGTATAATTTGCAACTTGTCAAGGCTTATTAAGTCTTACTTCACGAAAGTATTATAAACAATATGACCCGATTTAGGGGATTCAAACTTAATATTTTATTATTATTATTTAACTATAATACAAAAATATCTTAAAAGGAGAAAAAATGACATATCCAGAAGTGCATAGTCTAGAAGAGAGTTTAGCAATACTTAAAAAATATAAAGATGATGTAAGCAAAAAAGACTATGAAGAAATTAAATCTACCATTTGCGGACACGCTATCGAAGATATTTTTGCAAATGAAGAAGATATTATTATGCTAGTAAAAATGAGCGCATATAATCTAAGTAGTGATGAGATACTAGCAGAATACAAAGAAAAGGGATTTGTAGAATATGAAAGAAAGCAATGA # Right flank : ACTCATATTAATCATTGTTGCTATATAATAAATAAAGGAGTAAATTATGATATTTATATTCAAATTACTATTTTTTTATTGTTACTAATAGCTATTTTAAATAAAATTTTTATGATAGATATAGATTTAGCACAATATATAGCTATATGCTTGATAGTTTTTTATTACTTTTTTTATTATCTTTTTTGCTATTTATACCAAAAAGAGTTAAAAAGAGCCAAGCAAGATAAGATAAAAAAAGCATATGATTACTCAAAAATAGTAATCTAATTGCTATTTATCCTTAGTGCTATCTCGCAAATAATATAAGCCAATTTAAAAGATTAAAATGTTCTAAGAAGTTTTATATTAGTTTATCAATATGATGAGTATTAGAGCCTTATGTGGCTCTAAGGTTATTTAGCATCCCAGGCTAAGACTGTATTTCCAAAAGCATCACTTAAAACATCACCCATACCCATGATATTATACCCAGCATCTACATAATGCACTTCACCAGT # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TATTACAAACAATATGACCCGATTTAGGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA //