Array 1 24446-25082 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWGI01000002.1 Klebsiella pneumoniae strain VRCO0108, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 24446 28 100.0 33 ............................ CAGACCTCCTCTTCTACCTTGACCGCCCTACAG 24507 28 100.0 33 ............................ TAAAAACCCCGCATTATGCGGGGTTCTCTTTAT 24568 28 100.0 33 ............................ GAGGAAACGGCAAAACTGGATCAGCTTATCCGC 24629 28 100.0 33 ............................ CGCAGCGCGCCGGGCGATCTCCGGCGTGCCCTC 24690 28 100.0 33 ............................ TGGCGCACGCACAAGGGCGGCGGTTAGATGGGC 24751 28 100.0 33 ............................ CAGCTTCGTGAAGAAGTACGCATCGTCCGGCAT 24812 28 100.0 34 ............................ CATGGTCACGAAGGAGGGGGCCGAGGGAGCAGTG 24874 28 100.0 33 ............................ TTTACAAGGACCGATGAATGAACCCCCTGATCG 24935 28 100.0 33 ............................ CAACTGCGACGCCTGCGAGCATTGCCGCTACTT 24996 27 92.9 33 ........A........-.......... TCTCGTGATGGTCTATGACGTCGCCGTCGGTGA 25056 27 82.1 0 ............C.T..-....C.A... | ========== ====== ====== ====== ============================ ================================== ================== 11 28 97.7 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : GTCAGCGTCGGCCAACCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGTCTGGACGGCGCAGCGCAGGATAACAGTCTCCAGCTCCCGCTGCTGACCAGCATGTATCTTGGCGACCGCTGGGAGTACCTGTTCCGCACCGAAGGCGACGACTTTCCGCTGCGTGCCTACGGAACGGTGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTATGGATTTTTCCGCAGCGTTAACTACGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCCGGGAATGACAAAAGTGTTTTGCGCCTGGGCGCGGGCCGGGGAGGCGAGTAGGGTAGACCGGACCTGGTCAGCAGCAAGACAACGGTGGTGAGATGGGGACATACTTTTTCGTTTGATGAATGTGGTGCTGATGCGGAAACCCTGCGGAGTGCAATTGTCGTAAATCTGGTGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CAACAAAACTGGTCAACCGTTGTTATCGTTATCTTGGTTTAGTTTGGCAAACACAGTTTAATATATTTTTCATGTGAATTTAAAATCCATATTCATGTGTTATATTTGTTTTTTATTTCGCAATGGTTGTTAAGTCCATTTTTCTGGCGCAACTGAAGTATGATTATTCATACTACTTATTTATAATGTCTGATATTGTCGATTTGATGTCTCACATTAAGCGCAGCGTTTGTGAGTGCTTTTTATTTTATAAAAAATTATTTATAAACCTTCCTGACTTTAGTATTAATAAAACGCACATGTTTTATTAAGGATGATTTTCATGAGGCGCTTAACCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGCCCGGCGAAAACCCGGATGTTGAGTGATGGTCGCGTGGTGCAGGGACGCTCGGTATTGAGCCATTGTCAGATTGTCGGGGAGATTGCTCGGGCGCTTATAGCGTTGTATC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 33751-34761 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWGI01000002.1 Klebsiella pneumoniae strain VRCO0108, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 33751 28 100.0 33 ............................ TGTATCGCGCGCGTTTAATGGCGCTGCGCTTTT 33812 28 100.0 33 ............................ TAAGCGTTGATGCGGGAGAAGGTGAGCCGGGGA 33873 28 100.0 33 ............................ CGTAAAAGAGCGGATCGGCTCCTCCGTGCTGAT 33934 28 100.0 33 ............................ TATGTTCCCTGACCGCATCACGTCTGCCCTTGG 33995 28 100.0 33 ............................ CGTCAAAGATCTTCGTGCAGAGTACGAGCGGCT 34056 28 100.0 33 ............................ TGACACGGCGAGGATCAGCTTGCTGCGTGATCG 34117 28 100.0 33 ............................ TTCAGCAGGCCATGCGGGGCGATCAGTGTGCCG 34178 28 100.0 33 ............................ CGCGCGACGTTGGAAAAACAAAAGGCACCGTGG 34239 28 100.0 33 ............................ TCGGTGGACGTGGAGCTTAAAGGTGGCGAGCAG 34300 28 100.0 33 ............................ CAAGCTCGTTAAATTCTCCACTGCAATTAATGA 34361 28 100.0 33 ............................ TGGTGTGGACGCTGGCGTTGTAAACGTCCAGTG 34422 28 100.0 33 ............................ CCTCATCGAGCGTTACGGCGTTCCGCGATTCGT 34483 28 100.0 33 ............................ TCTGGTGAAAACCACACCAGGCCAACCGGGCGG 34544 28 100.0 33 ............................ TAACGACACCAGGCGGCATGATCACCTATGACA 34605 28 100.0 33 ............................ TATTTCGGAGTGGCCCAACGACGCCGCCGTGTG 34666 28 100.0 41 ............................ TGGAATCCACGACGCGCCGTATCAGCGCTGGCATTCGTTCT 34735 27 85.7 0 ......A...T.T....-.......... | ========== ====== ====== ====== ============================ ========================================= ================== 17 28 99.2 34 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : CTTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //