Array 1 9584-11019 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJVK01000024.1 Lentilactobacillus kefiri strain NBRC 15888 sequence024, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9584 29 96.6 33 ............................C AATCACATTCCATTTATGCTCCACACGTTTGTG 9646 29 100.0 32 ............................. AACAACACAACCATGACTGGGTTTATTACAAC 9707 29 100.0 32 ............................. GTATGTATGGCACTGTTGATAATGGTTATCGA 9768 29 100.0 32 ............................. TGGCTAAAGGTCGATATAAGCTCGCTAGACGA 9829 29 100.0 33 ............................. ATGCTGGACAGTCAGTCTGGCACTCAATCACTA 9891 29 100.0 32 ............................. AATAACATCGGCATACTTTGGGTCTATTTCCA 9952 29 96.6 32 ............................C GAGTGGAACATTGAAGACCACCAAGGCGGTAT 10013 29 100.0 33 ............................. TGGCGACGGGCAATGAAACAATCTAATCAGTTA 10075 29 100.0 33 ............................. TAACGGGATGGGCTTCCGACATAATTTATTTAA 10137 29 100.0 32 ............................. AATGCTGTTAGTGGTAAAACAGCAAAACCAAT 10198 29 96.6 32 ............................C AATATCGTGCGTACCGGAGGCGATCGCATAGA 10259 29 96.6 32 ............................C AAAATCCAAGCAAAAGCTCCTAAATACGAATA 10320 29 100.0 32 ............................. TATCGTTGGCGAAACCCGATATAAGGCTGCCA 10381 29 100.0 33 ............................. ATTTAATTGGTACATTTGGTGATGTTATTTATG 10443 29 100.0 33 ............................. CAACATAAGCGGTTTGACCTGTAAAGAGAACTG 10505 29 100.0 32 ............................. ACATGCACAGATAACCATGGTACACTAGACCG 10566 29 100.0 32 ............................. GTTATATAAAATTGTCGGGCTTATTCCTATGG 10627 29 100.0 32 ............................. TTTTACGTTCCGATTCTTGAACCCCACGTTGA 10688 29 100.0 32 ............................. GTCTCTTTCATAATTTCCTCCTAATTCTTTTC 10749 29 100.0 32 ............................. GAACTACCTCGTATCAATCTATATACTAACCC 10810 29 100.0 32 ............................. GCCTAAAATATTTTTAAAGTATAAAAAACTAA 10871 29 100.0 32 ............................. TTTGTTTATAGTTGCTGTCTTAGGAATGAGAC 10932 29 100.0 32 ............................. TATTAAACCCGTGCAAAGTCTTGTGATAACGC 10993 27 86.2 0 ............T.....A..--...... | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.9 32 GTATTCCCCACGCATGTGGGGGTGATCCT # Left flank : GCAACTGATAAAATTATTTCTATTGGCGCAGTCAAAAAAGTTGAAAATGGTGAAATTGATCAATTTTATAAACTTATTCAGGTTAACGATAACATTCAAACGAAAATAACGACCTTAACAGGGATTTCTTCTGACTTGCTAAGGACAAGGGGAATTGATTTGGATTTAGCATTGCAACAATTAAAAAAGTTTATTGGCCAATCAGTCGTTGTGGGGTATAATTTGCGATTTGATCAAGAATTTCTGTCCTATGGTTTCAAGAAAATTGGTCAACCAGATCTATCCAACCAAATGGTAGATCTAATGCCAGTTGTAAAAAAAACAAATAAATTTCTTGATAATTATCGTTTAAGTACGGTACTTAAAGAATACTCAGTCAGAAATTCAAAACCACATCATGCATTATCTGATGCTCAAGCAACCCTTGAATTGGAGACCAAACTCATAGAAAATGGACATTTACTAATTTAGAAATGCTGTTATGGCGGGAATCGTTTAGT # Right flank : TTTACCTAAAGCCAATTCAAGGCTTTTGACTACTGGATTATGAATTAAGCAACGGGGTTATCATTTAAAGATGGTGGTGCCGTAATAGATCAAAATAGAATTCGTCATAAGTGATTGGGCTAATTTAACCAGAAAGAGGTTGTTTGTAGTTATGATGGAATGTTTTTCTCCAGAAACGATTGATCACTTGAAATATTATGTTTATACATATGCTGATCCAACAAATCATGAAATCTTTTATATAGGGAAAGGGACCGGTAATCGAATCTTTGCCCACGAAAAAGACGCTGCCCAGGATCGTTATGAAAGTAATAAAATTGAACGCATTAACCAATTAACTCAACACGGCCAGCAACCAGAGCTACACATTATTCGTTATGGACTTAGCGAAACCGAAGCCTTTGTTTTAGAAGCGGGGTTAATCCGGACATTTCTCTATTGTCATCCACATAGCTATTTTAATTCAGATATTGATTTGACTAATAAAGTAGCGGGCCATG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 57379-56629 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJVK01000009.1 Lentilactobacillus kefiri strain NBRC 15888 sequence009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 57378 36 100.0 30 .................................... CTGATGATCGACCATTTGACGTTCAAAATC 57312 36 100.0 30 .................................... CTGTGATGTGGTCGTTACTGACCACCATTC 57246 36 100.0 30 .................................... ACAGATCAATATACACGGCGGCGCTTGAAA 57180 36 100.0 30 .................................... CGATAATTTGCGGATGTTTGAAGCTTGGAT 57114 36 100.0 30 .................................... GATTCCGGTGGTCTTCAATAAGTCTGACAT 57048 36 94.4 30 ..........A....................G.... GAGCGGCGAAGAATATTTGCTCACATATCC 56982 36 100.0 30 .................................... AATGTCGGCTTTGTTGATTACTTTATTGAT 56916 36 100.0 30 .................................... GTTTACTGATGAGTCTTCGTTTTACTGCCC 56850 36 97.2 30 .................................T.. TGACCAATCTCAAGGCTCAGAACGCTTGTG 56784 36 63.9 15 ..................CC.CTG.C.AAC.G.GAA TTGCCCATATTGCCA TGG [56767] Deletion [56734] 56730 36 97.2 30 ..................G................. ATAGCATGTGTTATGTTTGACTATCTTGCT 56664 36 83.3 0 ........................G..C....GTTT | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 94.7 29 GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCC # Left flank : AAACGGAGGAGTTAGTGAAAAATATAATTCGAATATTCTCAAACAATTGGAAACTGTTCTGACGGATGATCAACGAAAATCAATCACGGATATCAATAACCAGTTGTATACGCTGATTCAACAGTGTCTCTTCATGATTGATTTGCCACTGGAAGTTACCTATGATTGGGATCTTAAAAAGCTGTTTAAGTACTGTAAGATTCACTTTAATTCGCAAACCATGCAGAACCCATATGCTATAATTGAATCAATTATCAAAATCCATTTAGAGTGTGGATTGAAGTCGGCTGTTGGCTTAACTAATGTCGCTCATTATCTTAATCAGCAGCAGATAAATGACTTGTCCAAGCTTGTAAGTTCCACTGGAATCTCGACAATATTAGTAGCGTTCACAGATTTGAAGTCACAGGAGCTTTATACAAATTGTGACTTCTACTACATTGACGAGGACTTTGTTGATTGGCATGCATAACTTATTAAAATCGGATTATAAAAAAGCG # Right flank : TAGCTCGCTTGGAGGATCTCCCCAGAATTTCGTACGAAATTTTATAAACGATCCACAACAAATAACGAGTTCTTAGATTAGCAGTTAGCTGATCCAAGAACTCGTTTTGTTATCTCTATTTAATCAATTCCTTCGCCAAAGCATATCCCAACTTCTGGGCAGTTTGTGGTGTTGGATGAATTTCGTGATCCTCTAAAGTGACGTCCTTGTTTTCGTTGGTAATGATATGCGGTGCAAATTGGTTGAAGTTAACAACTTTGGCACCCAGAGACTTGTACGCCTTGGCTTCGGCGACTCGTAAGTCGTGGTAAGTGTAGCCATACATGTCACTCATGCTATCGCGGTTCATGCCGTTCAAGTCATAACGAGAGATTGGCAAGATACCGTAAACTTTAGCGGATGGGTTCAACTTCTTAATGACTCGGATATTGTAACGTAAGTGACGAATGACGTTCTTCAAACTCCCGGAATTCGAGTAGCTTGTGTAGTCATTGGTCCCG # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [26-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //