Array 1 36725-36872 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRCF01000038.1 Pseudomonas aeruginosa strain Pa795 K21_S49_R1__paired__contig_38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 36725 28 100.0 32 ............................ TGTTCCTGCTGGCGGTAGATCAAGAATTCTTT 36785 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 36845 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : TCAGGCTCATTTCGTTGTCCTCGATGCCCCGGGTTCACTGCCGTATAGGC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.84%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 51-1095 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRCF01000075.1 Pseudomonas aeruginosa strain Pa795 K21_S49_R1__paired__contig_75, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================= ================== 51 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 111 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 171 28 64.3 89 ..................NNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAGGCAGCTAAGAAATCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 288 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 348 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 408 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 468 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 528 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 588 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 648 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 708 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 768 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 828 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 888 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 948 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 1008 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 1068 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ========================================================================================= ================== 17 28 97.9 36 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GTGTAGGCAGCTAAGAAATAGTCGGGAGTCAGGCTTCGCCCCGTTCGATGG # Right flank : ATTAGCGAGTCACCGGGACAAAGGTGACCACGGGTTCACTGCCGTGTAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGGCAGCTAAGAAAAGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGTGTTCACTGCCGTGTAGGCAGCTAAGAAATCGCCCGTCACGGAGCCCGCCGCCTTGGTCACGTTCACTGCCGTGTAGGCAGCTAAGAAAAGAATGGACTGCCGAGCGCCGGCCGCCAGTTGGTTCACTGCCGTGTAGGCAGCTAAGAAACGGCATTGCTGAATGCCATAGCGGATCTGCTCG # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.26, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1414-1621 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRCF01000075.1 Pseudomonas aeruginosa strain Pa795 K21_S49_R1__paired__contig_75, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1414 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 1474 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 1534 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 1594 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : AAATCACGCCCCAGCCACTTTTCAACCCCGCACTGTTCACTGCCGTGTAGGCAGCTAAGAAAGGTGTGTGCGGCCAGCTCGGACCCGAACTTGAGTTCACTGCCGTGTAGGCAGCTAAGAAAAGTCACAGCCGCCGCAGCAGCCAGACCGCCCGGTTCACTGCCGTGTAGGCAGCTAAGAAATTAGCGAGTCACCGGGACAAAGGTGACCACGGGTTCACTGCCGTGTAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGGCAGCTAAGAAAAGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT # Right flank : AGGCATCCCCGAGCGCAAGCTTCCATCCCCGCCGTTCACTGCCGTGTAGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGTTGGCGAAGAACCAGTAGTTCACTGCCGTGTAGGCAGCTAAGAAAGATACCTGACGGCCTGGTGCTGGATCACCTGTGTTCACTGCCGTGTAGGCAGCTAAGAAATGTCCTTTCAACTCGGTCTGCTCGTAGAGGTTGTTCACTGCCGTGTAGGCAGCTAAGAAAAAGACGTGGCAGGCGGCCTACAACCACGACGAGTTCACTGCCGTGTAGGCAGCTAAGAAATGACTGCGGGGCTGCACGACATAGTCGTCGACGTTCACTGCCGTGTAGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTGTAGGCAGCTAAGAAAGTATGAAGTGTGTT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1794-2226 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRCF01000075.1 Pseudomonas aeruginosa strain Pa795 K21_S49_R1__paired__contig_75, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================= ================== 1794 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 1854 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 1914 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 1974 28 100.0 77 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGACGTTCACTGCCGTGTAGGCNNNNNNNNNNNNNNNNNNNNNNNNNNN 2079 28 67.9 32 NNNNNNNNN................... GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 2139 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 2199 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ============================================================================= ================== 7 28 94.9 40 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGGCAGCTAAGAAAAGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGTGTTCACTGCCGTGTAGGCAGCTAAGAAATCGCCCGTCACGGAGCCCGCCGCCTTGGTCACGTTCACTGCCGTGTAGGCAGCTAAGAAAAGAATGGACTGCCGAGCGCCGGCCGCCAGTTGGTTCACTGCCGTGTAGGCAGCTAAGAAACGGCATTGCTGAATGCCATAGCGGATCTGCTCGTTCACTGCCGTGTAGGCAGCTAAGAAAGGCATCCCCGAGCGCAAGCTTCCATCCCCGCCGTTCACTGCCGTGTAGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGTTGGCGAAGAACCAGTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 5.43 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.57, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 11019-10751 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRCF01000075.1 Pseudomonas aeruginosa strain Pa795 K21_S49_R1__paired__contig_75, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 11018 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 10958 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 10898 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 10838 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 10778 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 94.3 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TAGGCAGCTAAGAAAAGAAGCGCATCCAGCGATACGAAGATGCACT # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //