Array 1 8362-7461 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCOU010000027.1 Longicatena sp. 210702-DFI.1.255 PMMLAGOI_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================================================================================= ================== 8361 33 100.0 33 ................................. ACCTGTACGCTCATCTGTTAACTCAATTTTGTG 8295 33 100.0 35 ................................. CATCATTGGCAAGTATTAAGCACTTCCCAATTTGC 8227 33 100.0 35 ................................. ATTTCAAACTTGGTTAGGTCAAATCAAATTTAAAG 8159 33 100.0 34 ................................. AAATGACGCTGTATTTATCGATTATTATACGCGT 8092 33 100.0 34 ................................. TCATACCATTCGGGTAATGTCTTTGGTTTTGATA 8025 33 100.0 34 ................................. CCGACGTGAAGACAATTTTTCATCGCATGAATCG 7958 33 100.0 34 ................................. TTTTATAGTGGTTGATTGTTGGTTAGTTGTTGGT 7891 33 100.0 34 ................................. CATCTGTCTAAATACATATAAGTCAGTTGCTATC 7824 33 100.0 36 ................................. TTTTTGTTTAATGATTTAAAGATAACTTCGATAATA 7755 33 100.0 34 ................................. ATGAATATATGGTAGGTGATAAATATGAACAACT 7688 33 100.0 32 ................................. GGTAATTTTGGAGATATTGAAATCTACGACCA 7623 33 97.0 97 ............................C.... AATTTTAATTGTTCATACGTGTTGATCTGCAGCTGTCGTACCTCTTGTACGAGAGTTGAAATAAATTGTATATGTATACTGCGATCTCCCCGGTTCC 7493 33 93.9 0 ............A.......T............ | ========== ====== ====== ====== ================================= ================================================================================================= ================== 13 33 99.3 39 GTCGTACCTCTTGTGAGGTACGTGAGTTGAAAT # Left flank : AGGTGATTTAGATGAATATGCACCATTTTTGTGGAAGTGATGATTATGATGGTATTAATAACATATGATGTGAATACAGAGGATAAAGCTGGGAGGAAACGTTTAAGGAAGGTAGCTAAGCATTGTTTGAATTATGGATTGCGAGTACAAAATTCAGTGTTTGAATGCAATGTAAATCAAAAAGAATATGTTGAATTGCAGCATGTATTGTCTACTGAAATCGATGAAAGTAAAGACAGCCTACGCTTCTATCTTTTAGGGAATAATTATAAAAATAAGATTATTCATATTGGAGCAAAACCAACATTCGATGTTACGGAACCTTTGATTTTTTAAATGTTGGTGCGAATGTGAAGCTAACATAAATTTCCTAGGACATTCGCACCTATTTTTGATTATTTTAATTGGATTTTTATGCTTTTATTTGATAGAAATTTAATTTTTATGTTAATTTAATGCAAATATTGTTACTAATATCGAGATTAAAAGCAATATTTGCT # Right flank : TATTGATTTTAGATGAAAAATTATTGAGGATAATCGGTCGTACTTCTTACGAGAAATTCAGATGTCTATATGTAAGTATTTACAAATAAAAAAGGCAAATCCTCTTTGGATTTACCTTCCAAATAACGTATTAATCTGCCTTTTCTGTAACATCCTTCATCTTCTGCAAACCAAAGATAATAAGTCCACCAACTACAAACCATAAAATATCAAAAGAACTAAAACTCAATGGTGCTTTTGGTGTTGACAATGTTTGTGGTCCCATGATGATGGCATAAAAAGAACCAATCATCATACCGATTATCAGAAATATCATAATCGAACGATGTTTATCTAAAGCCCATTTGATAACCCGCACTACTGAAACAATTCCCGCTAAGATCCCCAATGCAAAGACAATCAGGATTGGCAGATAATCTAAGTTAAAGCTAATCACCGCTTTAACAGCACTTATGATAGGAACATAAAGTCCGAAAATCAATAATAAGGTAGAACCACTG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.44, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTCTTGTGAGGTACGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: R [matched GTCGTACCTCTTGTGAGGTACGTGAGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 21068-20445 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCOU010000027.1 Longicatena sp. 210702-DFI.1.255 PMMLAGOI_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================================================================================================================================================= ================== 21067 33 100.0 32 ................................. GCAAGCAATAGATTGGAGTGATGAAGATGAAT 21002 33 100.0 33 ................................. GCTCATAACCCTGTCGACGAGTCCTGAATGCCA 20936 33 97.0 37 ......................C.......... ATCGCTAGAGTTTGTTCCACCTTTTATCTTTAGTCCT 20866 33 100.0 34 ................................. GATTTAACGAACATCATAAACCAAATGAACAAGT 20799 33 100.0 33 ................................. GATACCTTTCTGCAGCAGGTAGATGATCTACAG 20733 33 100.0 35 ................................. GACCATTTTTTGAAATAATCTTCCAGTACGCTGAT 20665 33 100.0 157 ................................. GAAGTAAATAAAGCAGATGAAGTTATCAGCGAAGGTCGCATCTTGTAAGAAGCGTGAGTTGAAATGATAAAGTATTCGATAGAGCACTCTATGAGAAACGCCGCATTCGCGAGATGTGTGAGTTGAAATTGAATCGTACATAATTATTTGTCAAAGT 20475 31 90.9 0 ....C.--......................... | ========== ====== ====== ====== ================================= ============================================================================================================================================================= ================== 8 33 98.5 52 GTCGTACCTCTTATGAGGTACGTGAGTTGAAAT # Left flank : ATATGAACACGATAAAAATGATGTGCATGATGTGATGCTGTTGTGTGAAACATTTCAAATAGCAATACCAGATGAATATAAGGAAAAGTAAAATTTCAGTTTTGTGTTGAATCTCTAAGCAAAATAGCTTATAATTTGACATGCTACATATAGTTATTATCCACAGTTATCGAGTAGGTGTTATCAATGCCGATAACAAAATGATAACATTAGCTCGTATAGGCAGGATAATATGGATATATCAAATAATCAAAAGAACGAGAAACATTACAGAGAATAATTCCTAAACAAAAAGCGTTAGTCTTTGTAGAGTTTGAATAAATTTAACTATTTAATAAGTTGGTGCGAATGGGAAGCATACATAAAAAAGCTAAGAGATTCGCACCAATTTTTTTGTATCATATGTTGTGATTTATAGAAAATAATTGAAGAAGTATTAAGAAAGTATATAAAATTTATACATTTCTTCTTTAAATGGTATGTTTTACATGAAGATTTGC # Right flank : GTTGCATTTGGATTCATGTAAGTTATAACATTTATACAAATGTATAATTTCCTCTTCATTAAGATTTTTAAGGATTAGTAACACCATCGGCATGCACATGAATCCAAACACACCAAATAATTTACCACCTGCATACATACATAACAGCATTAACAAAGGATGCAGTCCTAACTGCTTTCCCATTAATTTAGGTTCTACTATATTACGTATTAAAGTAATAATTAAATATAATATTAATAATCCTATGGCTAGTTTATGTTGTCCTTGAACATAAGAAAACAGAATCCATGGTATCATAATACCGCCGGTACCTAATATTGGAAGTACATCAAAAATCGTTATGCCTAAGGCTATTAGCCAGGCTTTTTTTATATCTAAAATAGAAAGACCTATGACTAATTCAAAGAATGTTAATAGCATTAATTTGATTGTAGCTATAAACATGTTTAAAAAGGTATGAGTGGCAAAATAACGTATAGATAATATGATTTTTTGTGTTT # Questionable array : NO Score: 4.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-1.81, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTCTTATGAGGTACGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.88%AT] # Reference repeat match prediction: R [matched GTCGTACCTCTTGTGAGGTACGTGAGTTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //