Array 1 38050-39336 **** Predicted by CRISPRDetect 2.4 *** >NZ_NION01000024.1 Pseudomonas aeruginosa strain 2321 2321_NODE_29.ctg_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 38050 28 100.0 32 ............................ AGAACGAAAACTGCTAGCGGCGACGATACCCG 38110 28 100.0 32 ............................ GCCCACCAGCTCAGTCCAGGCGCTGCCGGAAT 38170 28 100.0 32 ............................ ATGCGGATAAGGCCCGCAGGCGCCGAATTGGC 38230 28 100.0 32 ............................ CAGCAGCGGCTCCAGGAAGAGGGGCGCTGCCT 38290 28 100.0 32 ............................ AAGAGTCGCGGCGACAACTACCAGACGTCCGC 38350 28 100.0 32 ............................ AGTCCGGAAAATGCGCCTAGCTCCGGACTGGT 38410 28 100.0 32 ............................ GAAACAGGCGCTGTGGGCGATGAGTCCAAAGC 38470 28 100.0 32 ............................ TCGTAGGTTTCTTCGTCGTAGCGCGACTTGAT 38530 28 100.0 32 ............................ TTGCAAATCCTGGGCTGCCATCGAGCCAGAGG 38590 28 100.0 32 ............................ GAGATCATCCGGCGCAAGCGGGAACAGCTGCT 38650 28 100.0 32 ............................ TCACGACCTTCTCGAACGTTCCCAGGTACGTA 38710 28 100.0 32 ............................ AAGGTCAATTCCCAGGTGAAGCAACTGGTGGC 38770 28 100.0 32 ............................ GTAGCAGAGAAACTCAACAGCCCGACTGGACG 38830 28 100.0 33 ............................ GTAGGGATTGTGAGCGTCGAGGAGCGCCAGGGC 38891 28 100.0 32 ............................ TCGCATAATGGGCATTACGTGTAAATGCTCGC 38951 28 100.0 32 ............................ TGGCAGGCATGCCGGCATACCAATCCCCCGAG 39011 28 100.0 32 ............................ TGATAACCATGCTCAAACCACGCCTGGGCGCT 39071 28 100.0 32 ............................ TGCAACTCGAAAACATCGAACGCCGGCGCCGA 39131 28 100.0 32 ............................ CTGAGCTAACCCGGCTGGGATCCAAATCCTAC 39191 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 39250 27 92.9 32 .....................-..A... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 39309 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 98.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTTGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 49378-48210 **** Predicted by CRISPRDetect 2.4 *** >NZ_NION01000024.1 Pseudomonas aeruginosa strain 2321 2321_NODE_29.ctg_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 49377 28 100.0 32 ............................ AGTCGGAGTACGGATCGTCCTGTGCTGCCCCG 49317 28 100.0 32 ............................ TTCCCAGAAGACGGGGGTAGCCATGATGAATC 49257 28 100.0 32 ............................ GAGGCAATGGGTCAGCAACTCACGCCGGCCGC 49197 28 100.0 32 ............................ TTCGCGGCCAGCTTCTTGCGCATGATGAAGGC 49137 28 100.0 32 ............................ ATCGGCAGCATCAGGCTTTTATGGATCAGGGT 49077 28 100.0 32 ............................ TTCAAAAATTCGCCCAGGTGATCCCAGATGCG 49017 28 100.0 32 ............................ TCTCCTGATATCCGTTTCCTCCATACTGGTCT 48957 28 96.4 32 A........................... GTTGGCACCGAGGGCGGTCGACTGGATCACGT 48897 28 100.0 32 ............................ CAGCGCCTGGTACGTGAGCGAACCGCCGGTGA 48837 28 100.0 32 ............................ AACTGCGGCCGGTAGTGTCGCGCGCCGAGCCA 48777 28 100.0 32 ............................ ATGCCGCCCTCGGCGTCCGCGGTAATGATCAC 48717 28 100.0 32 ............................ AGGCCCAGCGCGCTAAGTCGAAGCCGGCATTG 48657 28 100.0 32 ............................ TTCACGGCTGCTGAAATTTTCCCTGCCTAACC 48597 28 100.0 32 ............................ CATGCGGGCACCTCCACCGCCGGCACCCGGCA 48537 28 100.0 32 ............................ GCGCTGCCCAGGCCTCGGGTTACGCACGAAAC 48477 28 100.0 32 ............................ ATGAATAAACGATTTCTCAGATGCCCTTCGCA 48417 28 100.0 32 ............................ TTGCAGTTCGGGTCTTTCGGGCCTGGCATGTC 48357 28 100.0 32 ............................ AGGGAGGGACTGCGTTGCGGGCCTGCTATGAC 48297 28 100.0 32 ............................ TCCGGCACCGTTCATCTCCTCCTCGCTCCAGA 48237 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 20 28 99.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGGTCGCTGCCGTCTAGGCAGAACCACCCTCTCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGTGGGCGGGTTGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //