Array 1 301212-300255 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGWF01000014.1 Paenibacillus sp. JMULE4 Joined_contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 301211 32 100.0 33 ................................ CTTTTTGATTGCCAGCAAATCAGCCTTTTTCAT 301146 32 100.0 35 ................................ CAACGTATGATGAGGCATATAACTATTGCATTCAA 301079 32 100.0 33 ................................ GTTGACGGCTATGCCTTAATAATACATGATAAC 301014 32 100.0 34 ................................ CATAAGTTGTTTTTAGCAATCAACCAAGTAGGAA 300948 32 100.0 35 ................................ AATCAATCCTCAAGGATCACATCAAGAAGAATCAC 300881 32 100.0 34 ................................ TTGAGCAAATAAAAAACCACTTGCAAAGCGTTTC 300815 32 100.0 35 ................................ GGCACACTCGGCTTCTTGTTTGGCTTTTTGTACTT 300748 32 100.0 34 ................................ ATGATACGCATAAGCTGCCAGTGATAACTCAATA 300682 32 100.0 34 ................................ TGACGATCATTATAAGCTTTATATCAATTTTACG 300616 32 100.0 34 ................................ TATGACAGTTACGTAACACGCCAGGCTGATATGG 300550 32 100.0 33 ................................ GGTAAAATTGTAGATTTTTATATCTATGCCGAC 300485 32 100.0 33 ................................ ATCCGGAAGAGTTTATGGATCCTGATGGCCGGC 300420 32 100.0 36 ................................ AAAAACGAGTCAAGCACTAGCATAAAAACATAAATC 300352 32 100.0 34 ................................ TAACCGTGATTGGATCGGATTGAACTTGTCTACC 300286 32 96.9 0 .......................A........ | ========== ====== ====== ====== ================================ ==================================== ================== 15 32 99.8 34 GTCGCATCCCATGCGGATGCGTGGATTGAAAT # Left flank : CGTTGACCGGGCTACACCCACAATTCGAAGGACTTTCACAATCGGATATCCGAGGTTAATCCATTTGCGGGCTACTTCAATTTTGTCAGCAAGTGAGGGTTTTTCTTTTTTATGAGATCACGTAAAATGGCAATTTCGAGATCCTTTTCGCCTAGTAGTTTTTTGAGTTGCTCATTCTCCTGGGATAACTGCCGATTTTCCATCGTGATTTCCGATACGGAAACGGAATGTTCTTCCGGTATCGAAGAGGTCTTTTTACCCTCTTTATATTTGCGAACCCATCTCCCAAGCATATTGGCATTGATTTCGTATTTACGTGCCACAAGAGTTGGACTGCCGACTTCGATCGCTTCCAAAATGATTTTTTCTTTCAATTCGGGACTGTATTGTTTACGTTGCATATTACATTCCTCCCTAACACTGGACATTGTACTTCAAAGACCTTATTCTGTCCAAGTTCATTAGGGGGCTAAAAAGCTACAGCACGCACATGAATTAGG # Right flank : ACCGCAGATTAGAAGGGTTATGAAACTATGATTTGCTTCGTTATCCACCCAGTAGCGCGAAGAGCCAAAACTATTCACTTTTTGTATAATTCATGTTACTGCTAACGCGTAGTGTCGGCGGTTGACGGTGTAATTTGTCTTGCTGGTGCCGTAGATCAGACAGTTGTAACCGCTAGAATATAGACATCAGAAATCGCTAGATAATAATGAACACTTTACGCTCCTTCCTCCCCTAACTATCATTCATCTTAGAATAATCATCATGGGTGAGGAAGAGTATGAAGCGCTTAGAAAGGTGGCATATGTTTTTCTCCATTCATCAGATGAAAGAGAAAGGATTAAGGATCTCACAAATTGCTAGAAAACTAAATGTTTCGAGGAACACGGTGTATAAGTACTTGAGCATGAATCCAGATGAATTCAAACAATTCATGGAAGGTATGGAGACCAGGAAAAAGAAATTAGACCCCTATGAGCAGCGAATCATTCAGTGGTTGAGG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCATGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 305000-302785 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGWF01000014.1 Paenibacillus sp. JMULE4 Joined_contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 304999 32 100.0 36 ................................ GTTATACTGCCTGTTAGTTGAGCAGCGACCTTGGGC 304931 32 100.0 34 ................................ AATACTGTCTTTGTCGGCGGCGGATTTAACTGGT 304865 32 100.0 34 ................................ GTCAAAGCCTTCAAAGTAAAATCCAAATGAAGCT 304799 32 100.0 33 ................................ AAGATATCCGTTTGTTGTTCTTAATCTTGACTC 304734 32 100.0 35 ................................ ATTTGCAGGGATTGAAATAGATTCAGTGCTTTGAA 304667 32 100.0 33 ................................ GTTCAAGCGGCTGGCAAACGTTTCGAGCTCCGC 304602 32 100.0 36 ................................ AGCGGTTCGTCACGTATCTACGCACGAAAGAAACGA 304534 32 100.0 35 ................................ AATTTTATATAGTGTTTTCGGCTTTGTTGGTTCGC 304467 32 100.0 34 ................................ CTTTATACCGTCAAGTTTTAATATTTTTATAACC 304401 32 100.0 34 ................................ GCTACGCTCTCGGAAAGTTTCAAGTCCCCTGCCT 304335 32 100.0 33 ................................ ACCTTACGAGGATACCGTTATTTCCGTTATTAG 304270 32 100.0 34 ................................ TGTTCGCTGTAATATGGTTTGTATGTGTCTTTAC 304204 32 100.0 35 ................................ CACCTACGCGTGATATGAGCTGCATGTACCGCTTC 304137 32 100.0 35 ................................ GACAAATTGACCTTATACAGCTCATGGAAGATGTA 304070 32 100.0 34 ................................ CAGACGCGGTTTCTGTTGCTCCATATCCTGCAAC 304004 32 100.0 34 ................................ TAAAATTTTAGTGTTATGAGGACTATCGAAAGTC 303938 32 100.0 35 ................................ ATCCTCTTTGCTCACGGCCAAAATCAGCGGTTCCA 303871 32 100.0 34 ................................ TCAGCTTGCGCGTCAATCGCATTGGGCTTGAGGC 303805 32 100.0 34 ................................ TCAGCCACCAGCACATCCAACTCTCTCCCAGATG 303739 32 100.0 35 ................................ TCACTTATTAAGGCGAAAGAAGCCGCCATCGTACT 303672 32 100.0 34 ................................ TTCCGGCTCCTGCACCACTTAATCTGTGAAAACT 303606 32 100.0 35 ................................ AAACTGAAACCAATAATGCTCAAACATCAGCAAAT 303539 32 100.0 33 ................................ ATTAGATCAACATTAAAGTATGCGGCAAGTATT 303474 32 100.0 34 ................................ GTGACTCACTATAAATCCGAAGAGATTTTTGATC 303408 32 100.0 35 ................................ AGTACGCTTGTTTTATGTATTCCTTAACCTTGTAC 303341 32 100.0 35 ................................ CTCCTGCTTTTGACTGTAACGTGAGTCTTCCTGGT 303274 32 100.0 33 ................................ CCTTGATATGATCAACGTATTTGCTAATGTAAC 303209 32 100.0 34 ................................ ATGGCCTCCATATTGTTATGTATTACCTGTTATA 303143 32 100.0 34 ................................ TCTTTAAATTGATCAAAAATCTCTTCGGATTTAT 303077 32 100.0 33 ................................ TATTAATTCTTCGTCAAAACATACCGCTCCGTC 303012 32 100.0 32 ................................ TTGCATATTTTCAACCTCGGAAATAGTCTAAC 302948 32 100.0 35 ................................ TCTGCAGTCGAGCTAGCCCTTGAACAAGCCGAGGA 302881 32 100.0 33 ................................ ACAGAGCGCTTGTCGGCTACAACAACACCCGCC 302816 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 34 32 100.0 34 GTCGCATCCCATGCGGATGCGTGGATTGAAAT # Left flank : GCGGACGCATGGATTGAAAATTGTGAAAGTAGGTGATCGGGCTGCTGGTATTGGTTACGTATGATGTAAGCACAGTTAGCAGTTCAGGGCGAAGAAGACTGCGTCAGGTATCGAAAATATGCCAGAATTACGGCCAGCGTGTACAAAATTCAGTATTTGAGTGCGTTGTCGACGCCACTCAATTTGCTGTTTTAAAATTAAAGCTCCTTGATATTATTGATCAAGAACAAGACAGCCTCAGATTCTATCAGTTGGGCCATAATTACAAGAGCAAGGTAGAACATATTGGTGTGAAAGAGTCTTTTGATTTGGAAGGCCTTCTAATTTTATAGTGCGAATGTGTAGTGCACAAGGTTTTCCGGGGACATTCGCACCGGGAAAATGGTTAAAACCCCCATTTTGTTTACAGTTTTATCCATATCATTTCAGAAATTCATTGATTTACGCGTATTTTTGATCATAAAAATGGAGTTTCAGGCATATTTGAATCAAAAATCGCT # Right flank : GAATGTAAAAACCTACCGGATTAACCCCTTAAGTTTGGACAGATGCTCACGAAAATAAGCTCATTCTTCGTTTTTCATTGCTTAAAAAGTTCCACCGCTTGCCATTGACTCGGAGCCTCCGCGGCGGATGGATTCTTTGCGAAAGGGCGAAGCCTACAAGTTTTCGCAAGGCAAATGAGCCTATCATCCGCCGCCACTCCATGTCAATGGTTCGCCTGACGGCCAAGCTCCCTGCATTACAGGTGAATCGATGGAATAATCAGTTCTTTTCTCTTGTAAAATTCATGTGGCGATAGAAAATGGATACCGGAATGAATACGGGTTTCGTTGTAAAAGCGAATAAACTTTGCCACTTCTTCATAAGCTTCGGCATACGTTTCAAATTCGTGCTTGGACAAACATTCGTCTTGCAAGATGCGATGGAAGGCCTCGATATGCGCATTCATGTTGGGCGTTCGGTTCGGAATACGCTCGTGTTCGATGCCGAGCTCTTCACAAGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCATGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //