Array 1 2083-6 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFY01000002.1 Aminiphilus circumscriptus DSM 16581 K349DRAFT_scf7180000000017_quiver.2_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2082 30 100.0 36 .............................. TTTCAATCGACAGTAGGGAGCCTGATATCACAAGCG 2016 30 100.0 36 .............................. GCGCGGTCGTCGTGCCGTCGCGGATCTCGACTCTGG 1950 30 100.0 36 .............................. TTCCATGGAATTCCACGAAACCAGAAGATTCGATGA 1884 30 100.0 35 .............................. CAACCAGATCCAGACACGAGACCCCGCACCCGCTC 1819 30 100.0 36 .............................. ACTGGCGACAGTGAGTCCAAGCATCTCGTCAGGGAC 1753 30 100.0 36 .............................. GCGGCTGGTCTCATCGCAGGCCTTGTTGTCGAAATG 1687 30 100.0 36 .............................. CAATTTCAGCTAACTCGGCAGCAATGGCATCGCTCG 1621 30 100.0 36 .............................. AGAAGGCATTCCTTCGCAACCTCGACCGCAGTCATA 1555 30 100.0 37 .............................. TCGGATTATGAATTGGGAGGTGGTTGAGAAGGGGGAA 1488 30 100.0 36 .............................. GAGACATCCTCCATGGAGATCCCGTCGAGCGTTGTC 1422 30 100.0 35 .............................. CAAAAATCCGGGGACTAACTGAGCGCCCAAACAAG 1357 30 100.0 36 .............................. TATGATCGACCACTACAACCTCATACTCCCGTCCAT 1291 30 100.0 36 .............................. GAAATTCCCTGGCCCAAAGAGCGCCAGCATACTCTC 1225 30 100.0 35 .............................. TTTGTCCCCGTAGATAGACGGGGGCAATCTGGGGA 1160 30 100.0 36 .............................. TCACGTCCGATGGCCACTGATGTTCGTTCGCGGTCG 1094 30 100.0 35 .............................. GTGGCACCGACGAGGGAATATGGCGCAGGGTGCGC 1029 30 100.0 36 .............................. ATCGGCGTCGGCTCGGAACTCTTGAACGGTCATTTC 963 30 100.0 38 .............................. AGGATAGCCGCGCTCCAGAGCAACCCTGTGGCTGCCTC 895 30 100.0 35 .............................. TTCATTCAGATATGTAGGCATATCAATCATCCTCT 830 30 100.0 38 .............................. ATCTCAAGTGCTTTTCGCAGGAGATCAATGACGTCTCC 762 30 100.0 36 .............................. TTCAGATTGAACGCCATTTGCGTACCTCCTTCATGG 696 30 100.0 35 .............................. GGTCACCCGGTCCCTTCCGATCCAGTACGCCACGT 631 30 100.0 36 .............................. TCGCAAGGGCCTACCAGTATCGAATCTGCAGATCCA 565 30 100.0 36 .............................. GCGGCGGCGGTGGCGGAGGCGGAGGGGTCTCGAATC 499 30 100.0 37 .............................. GATTTTGCCGCCCCGAGTGGCCTTGGTGCGCCTGCTC 432 30 100.0 35 .............................. CGACGTCATACACGTCGCCTCTGTGGGGCAGTCCG 367 30 100.0 36 .............................. ATCTCATCCCAAGGCCTGCAGCGAAAAACGCACGCC 301 30 100.0 36 .............................. GGGTATGGCTCGGTCTTCGATCTTCCCCCTGGGGTG 235 30 100.0 36 .............................. CAACTATCTTCGGGGCCTGAAGGTGCGCAGGACGGT 169 30 100.0 37 .............................. TTTGGCTCTCGCTCTGTGCTCACCGTACCAATGCCAG 102 30 100.0 37 .............................. TCCAACAATGAGCGAGGCAGAGCTTGAGTCCTTCCCA 35 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 32 30 100.0 36 GTTGTGAGCCTTCCTACGAGGGATGGAAAC # Left flank : TACACCTGGCGCACCGAGCGTTACGCTACCCGGGAAATCCTGGGTCAGGAGCGGGGAAGCGGGGATCAGTTTCTCTGACGGAGCGTCAAGGCAATGCCGGATCCGAAACTCTCTCATGCGCCTGTCGTTCCTGTCGTCCTTGCTGTTTTGTTGCCTCATGTCGATTACCTCGTCCGCCGTCTGGAGCCCACACCGTTATCGTCCTTGTTGTTGTGTTTGTTGCTGTTGTTCTTGTTGCCCCTGTGGTGCCTGTTCTTCTGTCCATGTTTGTGTGGCTCTGCTCCGGGAAAGTTCACCATGTGGGACCAGCCGACGCCGCCTTTGAAGTTTGCCTGCGTCCACCCTCGGTAGCGAGTAAAACCCGGGAGATCGACGCAGCGAGGCAAGACTCCCGAATTCTGTGACGGCAACGAGTTCGACGCAACACGCATCTTGACAACCGTAATGTTTCTTGCTCTGGCCACCCGACGGAAAAGCGGGTATGATGAGTGTCGCGGCGG # Right flank : CACATA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAGCCTTCCTACGAGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 58-3387 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFY01000006.1 Aminiphilus circumscriptus DSM 16581 K349DRAFT_scf7180000000022_quiver.6_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 58 30 100.0 38 .............................. CGCGGCGAACGCGATGCTTGGAAGGCTGGGTATGAATC 126 30 100.0 38 .............................. TCGTGTTGAAATTTCGGACAATGGCGTAGCTTGCGCCC 194 30 100.0 35 .............................. CCGTCTCGCGGGCGGCTACATTGTCCTCGTCCTCG 259 30 100.0 35 .............................. TTTTTTCAGCGAGTCTATCCATTGAGCACGAATAA 324 30 100.0 36 .............................. CCGTGTCTGCGAAGTCGATGACGAGGCAGTCCTTCT 390 30 100.0 37 .............................. CTTCTCCATTTCTCTACGGTGGCCCTACACCATCCGA 457 30 100.0 37 .............................. ATGACGAACTGCGTGTCGCCGACCGCGATGTCGGCGT 524 30 100.0 36 .............................. TGCCACACCTCGCTCGATCATCAACGTACAGTCATT 590 30 100.0 36 .............................. ATTTCAGTGCCATGCGAAACACCCTCCCGGTGTGAG 656 30 100.0 35 .............................. CCATTCCAGACAACCCCTCACTGCCCACGCGAGGA 721 30 100.0 36 .............................. TCCTGCATGGGTGAGAATTTTGGCGCTTATGGATTC 787 30 100.0 36 .............................. TTCCTGGGCAATATGAAGTTCCTGCCCCGCCCTTGC 853 30 100.0 36 .............................. TTCCCTGACTGGCTCAACGAAGGAACACTGCATCTT 919 30 100.0 37 .............................. GAATTTGCCCGCGGCAAGAGGCTCTGAATGCCTTCCG 986 30 100.0 35 .............................. ATCAACTCATATGCTGGAACAGCGTCGTGCGAAGG 1051 30 100.0 35 .............................. TCAGAATAACCAGATGTGGCTGATTGAACGGAATG 1116 30 100.0 35 .............................. ATGAATGCGCTATGGTCGGAGTATCCGTGGTCGTG 1181 30 100.0 37 .............................. ATTGCGATCCAGTTCAGAGCCAAAGAGAGTTTAAAAA 1248 30 100.0 36 .............................. ATGAGTTTGGCCTCTTGTCGCAAATGCGGATGTGTC 1314 30 100.0 36 .............................. GTCATCCTGATATTCTCGCCGTCGCACTGTACAACC 1380 30 100.0 37 .............................. CAGGGATTTCGAGCGGTGGTGCGAGAACCACCGCTCT 1447 30 100.0 35 .............................. CCCGGTATTCTTTTCGCCTCCCCGACGGCGAGATT 1512 30 100.0 35 .............................. CTCGTTCCGAGCCGTATTATCTGTGGTTCGGAGAC 1577 30 100.0 38 .............................. ATTGTTTCCTTACACACGTTTGAGAGCGGAGGCCACGT 1645 30 100.0 36 .............................. CCCTGAATCCGGTCGTTGTCGGCCGGATTCCAGTGC 1711 30 100.0 35 .............................. CTATGTCCTGCGTCTTGACGGAACAAAGTGTCTCG 1776 30 100.0 36 .............................. TTGAACCAATCCATATCCCACTGGTTGACCGGGCCA 1842 30 100.0 36 .............................. CCGTGAAATTTTGAGGGAGATGCGGCCTTGGTGTTC 1908 30 100.0 36 .............................. ATTTTCTGGACTCCCGCCGAAATATTCTTGCGGGAG 1974 30 100.0 35 .............................. CGTCCTCATGTTATTCACGAATGACGCAATCCCTA 2039 30 100.0 35 .............................. TTCTAACATCCTCCCCGTCCCGACCATGAACGCGA 2104 30 100.0 38 .............................. ATTGGGACGAGGTCCGGAAGGTCAGGGATTCTATCATG 2172 30 100.0 38 .............................. CAAAGAGGGTCCAGGACGGGACAGTCACAAAGGGGGAA 2240 30 100.0 36 .............................. CCATCTTCCCTGAAGGGACGGAGGTCCTCCAGATTA 2306 30 100.0 36 .............................. AACACTGGAACTCTTGAAGCCATCCAAGCGACCATG 2372 30 100.0 36 .............................. ATGAGTTTGGACTACTGTCGCAAATGCGGATGTGCC 2438 30 100.0 37 .............................. GGATTCTGGCTAAGAAGATCAACACATCAAAGCGCCC 2505 30 100.0 36 .............................. GTGATGTATATGATATGCCCTTTGCTTTCTCAGCGA 2571 30 100.0 36 .............................. ATTTTCGAAAGGAGGAGTTACCGTGAAGAAGTTTTC 2637 30 100.0 36 .............................. AGGAGTACAGCCAGCGGATGGCACAGAAGGGCTATG 2703 30 100.0 35 .............................. CGCTCAAGATACAGGAGGGACTGACGGGAAACCCG 2768 30 100.0 37 .............................. GTATATGGATAAATGCGCAAAATGGGGTATGATGTGC 2835 30 100.0 35 .............................. ACTCCTGCAGATGAAAAATTCCGCTCCCACCAGTC 2900 30 100.0 35 .............................. GCAGATACCGAATCTTTGCTCTGGAAACGTAAAAC 2965 30 100.0 36 .............................. AGTTCTCGCTCTCTGTCCAGCGTCTTTGTTTTCAGC 3031 30 100.0 36 .............................. AGGAGACGTTGCTCGACGCAGACAATCTCGGGTTCA 3097 30 100.0 35 .............................. GAGGCGGAGGCGGCGGCCAAAACCGGAGGGAACGC 3162 30 100.0 35 .............................. CTGTTTTGATCTGGGTGGATGGGGAGCCCAGAAGC 3227 30 100.0 35 .............................. AAAACTGTTTTGCGTTCGCCACATCCTCACCTCCG 3292 30 100.0 36 .............................. GCGAACAGCGCGCTTCCCTCGCTGGAAAGCGCTGCA 3358 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 51 30 100.0 36 GTTGTGAGCCTTCCTACGAGGGATGGAAAC # Left flank : TTCCTACGAGGGATGGAAACAATATTAAAGACATTCCAAAAGACATACTAGTAAAAAG # Right flank : CCATCATCGATTATGCTCTAAAGAGTGTGCAAAAAGTGCTTGCGGAGGGGGATTCAAAAAAAGAAGGTCATGGTGTATGTAGGTTGTCTGCAGCGCACAAGCAACCCGAGCCCTTAGGAGGCGATACACCATGACCGGAAAGAAGCATAGCAGTCGTTTCGCTGGAATGAAAGCCCTTTTCGGGAACGAAACGGATGCCCTGAAGACCCTGATGAAGGAAGTGCTGCAAGAAATCCTTGACGGGGAAATGACGGAACTCCTTGGAGCCGAACGACATGAGCGCAACACAGAACGTACGGGTTATCGGTCAGGCTACTATACCCGAAGTCTGGTCACGCGAATCGGCAAGCTGGAACTGCGGATTCCCAGAGACCGCAACGGAGAATTCTCCACGGCACTGTTCGAGCGTTATCAGCGCAGTGAGAAGGCATTGGTGGCGGCTCTGGCGGAAATGTATGTGCAGGGCGTGTCCACGCGCAAAGTGACGGCGATCACCGAGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAGCCTTCCTACGAGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.20,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 4812-6948 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFY01000006.1 Aminiphilus circumscriptus DSM 16581 K349DRAFT_scf7180000000022_quiver.6_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 4812 30 100.0 35 .............................. AGCTGCTGCGCACTTGCGCAGAACTGACGCAGGAG 4877 30 100.0 36 .............................. CCACGACAACCGCCGACGGGCTCATGAGTGCCGACG 4943 30 100.0 35 .............................. CCCTCTGGGGCAACGCATACGCCCTGATCGACCTC 5008 30 100.0 37 .............................. TTCGGACGTCATGGTGTCCATGGGTCATCCCGTCCTC 5075 30 100.0 36 .............................. ATATGACACCAAAGCGCTCAACAGCCTTGTCGTCGC 5141 30 100.0 35 .............................. GCCAGTTCGTCCCGCCGGCGCTGCAGGTCGTCCTC 5206 30 100.0 35 .............................. GAAGAAAGCCTGAATCCGCTGACGGGCAACGGCTG 5271 30 100.0 37 .............................. ATCCTTGTAAATGCTGAGGTTGAGCAGATCATCACTC 5338 30 100.0 35 .............................. TTTGGAGAAGGTGGTCCTCTCAGAGGTAACGAGAG 5403 30 100.0 36 .............................. AGGATATTGTCGCAGCAGAGTTCTCGAAGAGAACCG 5469 30 100.0 37 .............................. GCCCGACGCGCCAGTGTCGATCGTGATATCCGGTATC 5536 30 100.0 37 .............................. CAATCGTTCCGTCGTCCAGCTCGACGGTCGAATACTC 5603 30 100.0 35 .............................. TGGGGGCGCATGAATACGGAGAGCGGTGCCCCCTG 5668 30 100.0 37 .............................. CAGACAAGAATGGCTGGACCGTAGCACATGACCTGGC 5735 30 100.0 35 .............................. AGCATTTCGTACCACAGTCCGCTTCGTGATCCATC 5800 30 100.0 36 .............................. ATGACTCCGGAAGTGCTTGCTTTCATGGATCATTCC 5866 30 100.0 35 .............................. TGTGAACTGGTTGTATTCGGGCTGTTCGCCGACGA 5931 30 100.0 35 .............................. ATGCTCATCCGATCCACGGCCCGCATCCGCGTAGG 5996 30 100.0 35 .............................. CGTATTCTGTTTCACTCGTCCAGAGCTTCCTGTAC 6061 30 100.0 35 .............................. TGGGGGCGCATGAATACGGAGAGCGGTGCCCCCTG 6126 30 100.0 37 .............................. CAGACAAGAATGGCTGGACCGTAGCACATGACCTGGC 6193 30 100.0 35 .............................. AGCATTTCGTACCACAGTCCGCTTCGTGATCCATC 6258 30 100.0 36 .............................. ATGACTCCGGAAGTGCTTGCTTTCATGGATCATTCC 6324 30 100.0 36 .............................. CAGGGTCAATGGGAACCCTTTCTTTGGAGTTACCTT 6390 30 100.0 36 .............................. CGTCAGAGAGCCAATAAAGCGTGACCGTCCGAGCTT 6456 30 100.0 36 .............................. AAGTCATCGATGCTCCCGAGAGATGCGTCGAATGCC 6522 30 100.0 36 .............................. GAGATTGCACCTCCCGCGTTCTGGATCGCCAAGACA 6588 30 100.0 36 .............................. AATGTAAATCCAGTCTCTCCATTACCTCCTGCACCG 6654 30 100.0 37 .............................. TGTAATACCCACCTGCTCCTCCGCCAACCGCAACAAA 6721 30 100.0 35 .............................. CCGTCGCTGCTCTCCGGGCGATCCTGAGAAACGTC 6786 30 100.0 37 .............................. CAACACGAGGGAATCCCGATTCCGGAAACAGGATCCC 6853 30 100.0 36 .............................. ATTTGGACCCCCTGCCAACAAGGCACGCGCAGCCGG 6919 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 33 30 100.0 36 GTTGTGAGCCTTCCTACGAGGGATGGAAAC # Left flank : AAGGCCGATGACGATTGTCTCCAGGAACTCCGCTGGATCTACGACCGCCGGGACATTATGGAGGCCCACCGGGATCTGACGTCCTGGATCACCAAATGGCAGAGGAAATATCCGAAGCTTGTTGACTGGGTCGAGGAAAACATAGAGGAGACGCTGACCTTCTACCGGCTTCCCAGAGCACATCACAAGCATCTGAAGTCAACCAACATGCTGGAACGGCTCAACGAAGAGATCAAGAGAAGGACCCGGGTCGTCCGTATCTTCCCAAACACCGATGCATGTCAGCGCCTGATACGGGCACTGTGCGTCGAAACCCACGAGGCGTGGCTGGAGTCCAGTCGCTACCTCAACATGGACCTGTTGATTGAACACAAAAAGGCACTTTTGGAAAAGTGTGGCTAATCGCCGCAGACGGCCGCCAAACACCATGAAAACCTTTTTGCACAACTTGACGCACACAACTCCATCATCGATCAGCAGCGCCCAGCACCGGACATCCT # Right flank : CCCCTTCTCGCGGTTCTGGAGCGCGTGCCCTCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAGCCTTCCTACGAGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.20,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 24-2234 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFY01000001.1 Aminiphilus circumscriptus DSM 16581 K349DRAFT_scf7180000000019_quiver.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 24 30 100.0 36 .............................. TTGAGTATCCGCTCTGCGTCTGTCCTTGCAGCATCG 90 30 100.0 36 .............................. GGGGCTCATCGAGGCCGAGCTGGAGGGCCTCGAACC 156 30 100.0 36 .............................. TGAGGCAGGAAAGAACCGCATCCACAAGGGATTCAG 222 30 100.0 37 .............................. CACGACAAAACAATGCTTCAAAAACAGGTAAACCAAG 289 30 100.0 36 .............................. AGCTCCGCCAGTGACGGAGGCTCCCAGGGGACCTCC 355 30 100.0 37 .............................. AGCGTGTCGTCCGTCTCTATTCCGGACAAAAGCGGAA 422 30 100.0 37 .............................. TAACTTATACCTGCTCGATAGATTTATCCTCTTCCTG 489 30 100.0 37 .............................. CGCAATCGCTGAGAGAGGCGGTGGCCGAATCATGACA 556 30 100.0 37 .............................. CGCCGAGGACAAACGGCGCAGAGCCAAGGATCTCTGC 623 30 100.0 36 .............................. ACTAGTGTCTCTAACAGCACCATTGCCGCTGACCAC 689 30 100.0 38 .............................. GCCACAGAGTACGGGACATCGAGAAGCGGCTCGTCTTC 757 30 100.0 35 .............................. CCTGCTCAAGGGATGGGGGCTTCCCCGTGCCGCAA 822 30 100.0 36 .............................. ACTGCCTCACACATATCTCCATCTGCTCCACCATGA 888 30 100.0 36 .............................. TCAATATCCAAAACGATCTCCAAGAAGGGGGTAATT 954 30 100.0 35 .............................. GACGAGCGGCGGAATCTAAGCCGCTGCAACAGGGA 1019 30 100.0 36 .............................. AGTATCTGACGGTACGTCATACCTACACTCTCCTTT 1085 30 100.0 37 .............................. ATAAGATGGCACTTGACAAGGCGCTAAAATCTGCTGG 1152 30 100.0 36 .............................. ACTTGAAAACGAGGTGTTTCCCGCACTTCCGCTCGA 1218 30 100.0 35 .............................. CTCGTCGTCGTTCTCAAGTGCTTCAATCACGAGCC 1283 30 100.0 36 .............................. TCAAACATCCTGTGCCGTTCACTCATCGAGATCACC 1349 30 100.0 35 .............................. CAACGTCGTCGTGGAGAGAATGAAGCCCGGTAGGG 1414 30 100.0 36 .............................. CTCGGTCCCGTCTTTTTTGAGCAACTGTTTCGATGT 1480 30 100.0 39 .............................. CCAGTGATGCGCCGGAGCACACCGGGACCGAAGCCACGG 1549 30 100.0 35 .............................. CAAAAACAAACGCCGCGTCGGACCGCCATCCAGCG 1614 30 100.0 35 .............................. TAATAATCTGGCGAATAGATTTTATCTCCGACGAA 1679 30 100.0 36 .............................. AGTCTTTAAGGCTTTGTCTTTTAAGCTCTTGTCTTT 1745 30 100.0 36 .............................. TTTCTATGTCCGGTTCCATGTTTTTCGTCTCGACAG 1811 30 100.0 36 .............................. CACGCATACACTGCGCAACATAAGGAACCTTATAGG 1877 30 100.0 36 .............................. AATTACCACGGCTGCACAGGAATTTTTTGCCCCTCT 1943 30 100.0 35 .............................. ATGTCGTCACGCTGCATCAGTGTATCAGCGATGTG 2008 30 96.7 35 ....................T......... TCAAGTGTAAAATGCTAGCATCTTGAGGTGTGTCC 2073 30 100.0 36 .............................. TTGTAATACCGCACATCCTTGATTGAACCGGCCCAG 2139 30 100.0 36 .............................. ACGATACCCGCACGGATGCTGTCGACATCCTTCGAC 2205 29 76.7 0 ...T...........C..-CT.....GT.. | A [2229] ========== ====== ====== ====== ============================== ======================================= ================== 34 30 99.2 36 GTTGTGAGCCTTCCTACGAGGGATGGAAAC # Left flank : CGCGCACCTCGTGGACGGAACGGG # Right flank : CACTTTGGTGTCCGTTTTTTTCTACCCCTCGTTATACTCCAAGCTTCTCTCGGAGGGCTTCCTGAAGGGTGCTGGAGAAGTTGATCTTGTGTTCCACGGCCATCTCGTTGAGCCATGCCGGGAGGGTAACGTTCTTGCTGACGGATTTTTTCGCTTCCTCTTTGCGGAGAACGTCCATGCGCACGTCGATCAGGACGGCGACTTCGTCTTTTTCCGGTCGCAGTTTGTTGATCGGGGTGGGGGCGGGGATGGGATCGTTATCTTCTTCCATGCAGAGTAAATGTCCTCCCAAAGCATCCTTGGCGCTGGCGATGGCGTCGACGTAGTCCTTCCCGAAGGTATTGCAGCCCGGAAGATCGGGAAAGCGGACGCAGACATGCGTTCCATCTTCGGAGAGCAGTGCGGGGTATATGCGGACATCCTTTTTCATCCCAGTTCGTCTCCTTTCCAAAAGTGGGGCTATTTCAGCCCCGCCTGTTGCATGATGTTTCCAAAGGTTT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAGCCTTCCTACGAGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.20,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //