Array 1 14-643 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJOW01000007.1 Streptococcus gordonii strain BCA7 D8819_contig007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 14 36 100.0 30 .................................... GGACTCGCTAGAGAACAGGCAGAAAGCTAT 80 36 100.0 30 .................................... CTGATAACGCTGAGCTGATTGCTAAGTCAA 146 36 100.0 30 .................................... CTGATAACGCTGAGCTGATTGCTAAGTCAA 212 36 100.0 30 .................................... CTGATAACGCTGAGCTGATTGCTAAGTCAA 278 36 100.0 30 .................................... TTACCGTCTGTATCTTTGACAAAACCTTCG 344 36 100.0 30 .................................... ATTTGATATTCCGTTCTTTAACGCCTGCGG 410 36 100.0 30 .................................... ATAGACCACATATGCACATAACTGGCATTG 476 36 100.0 30 .................................... ATAGCACTCTTTATCCTACAGCCTTCCGAC 542 36 100.0 30 .................................... GATTGGTCGCAAGCAGATGAAGATTCTGGA 608 36 80.6 0 .........................G.G.AATT..G | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 98.1 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATCCGAATACCTGG # Right flank : GTTTTTCTTTACGAATCTATCCAAAAAAACCACCTATTAGGTGGTTTTTTCAGTATCTATCACTGCTTACTAGAAGAAGAACTTGAGCTGTTTGAGCTGTCGCTGCTGGATTCAGAACTGTCTTCTGAGGAGCTGGTGCTTTCAAATTGTTCTGGGTGGAGCGCTCGATAGCTTGGAGCATTAAAGAGGTCAATGGTCGATTCACCCTTGCGTTGGCTGTAGAGACTGGTTGATTGGTCTCCTTTTTCTTCCTCGATTTTCTTCAATGCTTTGAAAGAGTGGTTGTAAGAGTATTTCTTGACATCTACCTTGCCCAAGTCATTACCCTCGTAGAAGCGAATTAAGTCACCGGTTTGAATAGCGTCACTAATCTTCAGCTGGGTATTGGCAGCATTACGAATATCATCCAGTTCTTTCTTGATGGTTTCGTCTGGATTGGTAATTTCCTCACCGGTTTGAGTGTAGTAGGTCCGTCCGTTGAAGCTAGTGTATTTTGGTGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [11.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 111354-112792 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJOW01000008.1 Streptococcus gordonii strain BCA7 D8819_contig008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================ ================== 111354 36 100.0 30 .................................... AACCAGCCAATTCAATGAGCACCGCCCAAA 111420 36 100.0 30 .................................... AATCTAATTTGAAAGAATACAAGAAATTTA 111486 36 100.0 30 .................................... GCATTTTAGATTCAACTGCTTGCCACTGTT 111552 36 100.0 30 .................................... CTATGCTTTATCCTGAAGATGTTGATTACA 111618 36 100.0 30 .................................... AACAGGAATTGATTGAGTATTGCGAGTCTT 111684 36 100.0 30 .................................... TCTGCACCTTTTTCGATTTTCAAGTGGCTA 111750 36 100.0 28 .................................... GGACTGTTCGGGTATCATGTCGCAAGTA 111814 36 100.0 30 .................................... CTATCACAATCAATGGCAGGCAGACCAAGC 111880 36 100.0 30 .................................... GCTGTAACTTCAGCAGCTAACTCAGCATTA 111946 36 100.0 30 .................................... CTATTTTTTATGAACTAGATAAATCCATCA 112012 36 100.0 30 .................................... ATAGCGTTGGTCGCTTCTTCAATGAGTATA 112078 36 100.0 30 .................................... CAGCCTGATTTGTGTGATTTACAATGCCCA 112144 36 100.0 31 .................................... AAAGCTATGAACGATGTTATAGCTACTACTA 112211 36 100.0 30 .................................... ACCTATCCAAGCCGAGATGATGATGAGACT 112277 36 100.0 30 .................................... CGCCTGTACCAGACCATATCCGAATACCTG 112343 36 100.0 30 .................................... GGACTCGCTAGAGAACAGGCAGAAAGCTAT 112409 36 100.0 30 .................................... CTGATAACGCTGAGCTGATTGCTAAGTCAA 112475 36 100.0 48 .................................... CTGATAACGCTGAGCAACCAGGTTTGCGAGTCAGTGATATCCTCACAC 112559 36 100.0 30 .................................... CGCCTGTACCAGACCATATCCGAATACCTG 112625 36 100.0 30 .................................... GGACTCGCTAGAGAACAGGCAGAAAGCTAT 112691 36 100.0 30 .................................... CTGATAACGCTGAGCTGATTGCTAAGTCAA 112757 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================ ================== 22 36 100.0 31 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TGGATGATTATCTATCCTACAGTGAATTTGTTAAGTGTTGCGAAAAAATGGAACTTCTTACTAATCATAGTAACTCACTATATATTGTTTCGTTTCCATCCAATGAGGGCTATATCCACGTCACTAAAGAGGTGTTAGAGGAAATCAATATTGTCTCAGATTATGTGGATCATTTTTATTCGTTAGAATTTATGTATGATCGCTTTACTAATCAGTATCCAATAAATCAAATACCTGATGAACAAGAATTTTTAACTTCTTTAAGAAAGGTTGGCCCCTATTTATTTAGTTCAGACATTCTTCATATGAGTTTATCAATAGAGGATCAAGTGGTATTAAAGATTTTAAACAAATTGTATCAGTATGAAATGAAAACAAAATTCCGTATTGGAGCAGTCAATCCAATGTTATTGAAATATTTGGAAGAATAGTATTGACGAGTGTGATGTAAGGATTTATAATATTTTTGAGGTACAGAAACCAAAATTGACGAATTTGAG # Right flank : CTGATAACGCTGAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //