Array 1 18684-18455 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEFI01000005.1 Bacillus sp. WP8 strain DE0144 NODE_5_length_291206_cov_39.538081, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 18683 32 100.0 33 ................................ TATGATCACCAGTTAAACTATTAGAAGCTCCTG 18618 32 100.0 34 ................................ ATGACATCACCCTATTTTTTTTCTGCTTCTCTTT 18552 32 96.9 33 ...........T.................... TTCTGGGAAATCATAGCCACTAGGTATTAAAGG 18487 32 87.5 0 ...................GAC.....A.... | T [18458] ========== ====== ====== ====== ================================ ================================== ================== 4 32 96.1 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ACTCTACATGAGTGCGTGGATTGAAATATATATGTGAGCATTTCATAACCATACTCAATGTCGCACTCTATATGAGTGCGTGGGTTTAAATTAGCCGATGGTTCAGCTTGATGTTTTTTTCAAATCGCACTCTATATGAGTGTGAGGAATAAAATTCTTGTCAGAAGGTAGCTTGAAAGATATATTGACAATTGCACTTGATATAGGTGTGAAAAACATAACTCTGTTTCACCCATTTTATTAATGAATTCAAAGCGGTTGATGAAACAGCGAAATAAGTATGATTATCATCAATAATAGTTTTTAATTAAATAGGATTAAGAAAGATTCGGTGCGAATGTGAGGTGAACATAAAATTCCCGGGGCATTCGCACCTTTTCATTCGACAAAATTGAGAAAAAATGTATATTATTTAGAGGTGAAAACAAAATTCCATATAGAAAATTGAGGGTTTTGGCTATCATTACCTAAAAAATGTTATAATTAGGGCAGAAATCGCA # Right flank : TGCGAAAACATAACTCTGCCTCCTGCCTCAGTAGTCATGAATCTAATTGAATTCAATTGTTGCTGAAATATAAAGAAGTATGATTAACAAGTTTCAATAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCTATTCATTCGACAAAAATAAGAAAAAATGTATATTTTTTAAGGGTGAAAACAAAATTCTATATAGAAACTTGAAGGTTTTGACTATGATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCAGTCGCACTCTACATAAGTGCGTGGATTGAAATTCTAAATGGATGCAGCATATTAACCTCAGTGTAGGTCGCACTCTACATGAGTGCGTGGATTGAAATAATACGTAGTTCAGCAAACTATCGAAGTGTACAAGTCGCACTCTACATGGGTGCGTGGATTGAAATGGTGAATGGTGGGAAAAGACAGGAAAGCTTGGTGTTGTACTCAAC # Questionable array : NO Score: 8.66 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 19520-19029 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEFI01000005.1 Bacillus sp. WP8 strain DE0144 NODE_5_length_291206_cov_39.538081, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 19519 32 100.0 35 ................................ AATGTCTTTTGTAATGTTCACAGTGACTTAACCAC 19452 32 100.0 33 ................................ CACTTAACAGCTTCATAAGTAGAAGAATGATAA 19387 32 100.0 33 ................................ TGTGACAAGAAATTCCTCGTCTCTTACCACAAT 19322 32 100.0 35 ................................ AACCACTACAATACGCAGGATTAAAAAAGACTATG 19255 32 96.9 35 ...........C.................... ATAATGGCCTCATATCCTTCGATAGCTCCATTCAC 19188 32 96.9 32 ...........C.................... ATATATGTGAGCATTTCATAACCATACTCAAT 19124 32 93.8 32 ........................G..T.... TAGCCGATGGTTCAGCTTGATGTTTTTTTCAA 19060 32 84.4 0 A..................T.A...A.A.... | ========== ====== ====== ====== ================================ =================================== ================== 8 32 96.5 34 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : TGCCTGAGACGGTAGGAGAAGCATTCAAAGTGGATGTGATGACACCACATCATTCAGACTACAACAGCGCCAAGCTAGATAAGATGAACAAAGGGGGAAGTGTTCCAGCCCCTCGAGACGATGACTCACCAACACCGATCCATTTCTTGACGGTGGTCAACGGCCGCTTTCAACTTCTATTGAAAACAAAAAAGAATCTACCAGAAGAAGCGGAATGGCTCGAACTCGCCAAAACCATCTTACTAGGCGCTTTAGAACACGAAGGAATCGGTGCTAAAACAAATGCAGGTTATGGAAGACTTAAAATGGACGACGTCTTTTCATAAGACTAAGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTGAGTGTGAAAACAAAATTCTATATAGAAACTTGAGGATTTTAACGATCATTTCCTAAAAAATGTTATAATTAAGGCGGAAATCGCA # Right flank : TCTTGTCAGAAGGTAGCTTGAAAGATATATTGACAATTGCACTTGATATAGGTGTGAAAAACATAACTCTGTTTCACCCATTTTATTAATGAATTCAAAGCGGTTGATGAAACAGCGAAATAAGTATGATTATCATCAATAATAGTTTTTAATTAAATAGGATTAAGAAAGATTCGGTGCGAATGTGAGGTGAACATAAAATTCCCGGGGCATTCGCACCTTTTCATTCGACAAAATTGAGAAAAAATGTATATTATTTAGAGGTGAAAACAAAATTCCATATAGAAAATTGAGGGTTTTGGCTATCATTACCTAAAAAATGTTATAATTAGGGCAGAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATTATGATCACCAGTTAAACTATTAGAAGCTCCTGGTCGCACTCTACATGAGTGCGTGGATTGAAATATGACATCACCCTATTTTTTTTCTGCTTCTCTTTGTCGCACTCTATATGAGTGCGTGG # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 27421-27126 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEFI01000005.1 Bacillus sp. WP8 strain DE0144 NODE_5_length_291206_cov_39.538081, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 27420 32 100.0 33 ................................ AATTACTCCATAATAATTGCAAAGGCATTCGGT 27355 32 100.0 35 ................................ CTCGACTAGATTCCATGCTTTTTTGTACCAGACAA 27288 32 100.0 33 ................................ TCTAAGTATCTTATGTTTTCCCTACATTTGTCA 27223 32 100.0 34 ................................ TCGCCTTATCAGTTGATTAGAAAAATGACTGTCG 27157 32 87.5 0 ...........T...........AT..T.... | ========== ====== ====== ====== ================================ =================================== ================== 5 32 97.5 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : TGAGTGCGTGGATTGAAATGAAACACAGATGAGCAAAGTTAAAGCTATTTCAGTCGCACTCTATATGAGTGCGTGGATTGAAAATTCGAATAGCTTTCCAGAGATAACAAGTCTCCCTGTCGCGCTCTATATGAGTGTGAGGAATAAAATTCTTGTCAGAAGGTAGTTTGAAAGATATATTGACAATTGCGCTTGATATAGGTGTGAAAAACATAACTCTGTCTCACCAATTTTATTAATGAATTCAAAGCTGTTGATGAAACAGCGAAATAAGAAATAAGTATGATTATCATCAGTAATAGTTTTTAATTAAATAGGATTAAGAAATATTCGGTGCGAATGTGAGGTGAACATAAAATCCCCGGTGCATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAATGTATATTTATGAAGGGAAAACAAAATCCTATATTGAAATTTGTGGATTTTGACTATTATTTCCTAAAAAATGTTACAATTAGGGCGAAAATCGCA # Right flank : GATTGTGTCTTAAACGGGTATGACATTCTCAGAGATCATCTTCTTACAACACCCTCTTTCAGATACAAAAGCCATCAAAATAGACTGTTCATATGTATAGTGAAAACATGACTCATTGCAGTCATGTTTTTTTTCTTCTTTTTCCTAAATAAACCTTAAAAAATGTCAAAATAAGTCGAAATGAAAAGTAGTCATTTAGATTCAAATTTTATCCATTCGTAATGAATGGTGAAGGAGGAATTGGTTTGGGTGAAACGGAGCGAACTGGTAAAGTGGAGCAGCTGATCTTAGAGAATTATCAAAGATTAAACAGCATGATATCAGAAGAAGTGGACTTTGCTTCTAATCATGGCGGGCTGACAGGGGATTCTAGAGAAGTGATGTGGATGGAGTTTTTTCGGAAAATCATTCCTAAAAAATATTCATTAGCACAAGGTGTCATCATTATTGACTCAGATGGAAATCATTCTAACGAAGTCGATATTGCCGTATTTGATGAG # Questionable array : NO Score: 8.94 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 28724-27771 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEFI01000005.1 Bacillus sp. WP8 strain DE0144 NODE_5_length_291206_cov_39.538081, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 28723 32 100.0 33 ................................ CTGTCACATAAATTTGAATTGCGAGATGGAATT 28658 32 100.0 36 ................................ ATTACAAATGATGAATTTGATTATTTGCTTAATCAT 28590 32 100.0 35 ................................ AAATAGCGCATGACATGATCAACATAATTAGGGTC 28523 32 100.0 33 ................................ CACAACAAAGAAAGTAAATTCACCCAAGGTTAT 28458 32 100.0 35 ................................ AAGATATTCAAGATTCGTTAATATATTCACAATTG 28391 32 96.9 34 ...........C.................... CGTCAACCGCTGAAAGAGGCAAAGGCACGCCATC 28325 32 96.9 34 ...........C.................... AATGATGGAAATGCAAGCGGTTCTTCGAGAGCTT 28259 32 100.0 32 ................................ TAATCTAGTACGCATTGCAGATAGTTGACTGT 28195 32 96.9 33 ...........C.................... TGATCTGTTTGAGTGTTTGAATAAACTGATAAA 28130 32 96.9 33 ...........C.................... AAGTTATGGTATACGCCGTCACGAGTTGCCGCC 28065 32 96.9 34 ...........C.................... ATGCCCCATGCTGTCAATTGTTCCTTGTCCGTCA 27999 32 96.9 34 ...........C.................... AATTTATCTTTATTGGCCGTAAAGATTCCACTGC 27933 32 100.0 33 ................................ GAAACACAGATGAGCAAAGTTAAAGCTATTTCA 27868 32 96.9 34 ...............................A TTCGAATAGCTTTCCAGAGATAACAAGTCTCCCT 27802 32 84.4 0 .....G.............T.A...A.A.... | ========== ====== ====== ====== ================================ ==================================== ================== 15 32 97.5 34 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : ATGAAAGAAATAGCCGATCAGTTAGGCGAAACAAGACAAAACATCTCAAACATTCACAAAAAAGCACTCAACAAACTAAAAGAAGAAACAGGGGGAGATGTCCGTGCACGAAGACAAAATGACCAATGGAGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTCTATATCAAACTCATCGAAAAAATAGACCGGCTGATTTACCAAGAAGGACCTGGATTTTGGGAGTTTATTGTGGAATATATGACGAAGTTGTAAGAGAGGCTCTTGGTGCGAATGTCAGGTGAACATAAAATCCCCGGGACATTCGCACCTTTTTATTCGACAAAATTGAGAAAAAATGTATATTTTATAAAGGGGAAAACAAAATTCTTTATTGAAAGTTGTGGATTTTGCCTATCATTTCCTAAAAAATGTTACAATTAGGGTGGAAATCGCA # Right flank : TCTTGTCAGAAGGTAGTTTGAAAGATATATTGACAATTGCGCTTGATATAGGTGTGAAAAACATAACTCTGTCTCACCAATTTTATTAATGAATTCAAAGCTGTTGATGAAACAGCGAAATAAGAAATAAGTATGATTATCATCAGTAATAGTTTTTAATTAAATAGGATTAAGAAATATTCGGTGCGAATGTGAGGTGAACATAAAATCCCCGGTGCATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAATGTATATTTATGAAGGGAAAACAAAATCCTATATTGAAATTTGTGGATTTTGACTATTATTTCCTAAAAAATGTTACAATTAGGGCGAAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATAATTACTCCATAATAATTGCAAAGGCATTCGGTGTCGCACTCTACATGAGTGCGTGGATTGAAATCTCGACTAGATTCCATGCTTTTTTGTACCAGACAAGTCGCACTCTACATGAGT # Questionable array : NO Score: 8.90 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //