Array 1 42369-40467 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYAV01000014.1 Salmonella enterica subsp. enterica serovar Newport strain BCW_2742 NODE_14_length_134276_cov_3.3019, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 42368 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 42307 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 42246 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 42185 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 42124 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 42063 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 42002 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 41941 29 100.0 32 ............................. GCATTCCCGATCGTCAACCAGAGAACTGGCAC 41880 29 100.0 32 ............................. AAACCCGCGCCCGTGAGCTCGATATGCTCGGC 41819 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 41758 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 41697 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 41636 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 41575 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 41514 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 41453 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 41392 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 41331 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 41270 29 96.6 32 ............................A CCAATAACCGAAATATCCACGGTGGAAATTTC 41209 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 41148 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 41087 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 41026 29 100.0 32 ............................. GGGCGAAAACGCGCTTTGAAATTCGCACGGTC 40965 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 40904 29 100.0 32 ............................. CCGGACGACCCGATGGGGATCCTGCCGTTGCT 40843 29 100.0 74 ............................. GGAGTATTTGAAATGTACTATAAGGACTTCATGTGTTCCCCGCGCCAGTTCTTCAGCTGGCAACGACAGAATGC 40740 29 100.0 32 ............................. GGGGCTTGTTAATATTTCTCTCACTGACTACG 40679 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 40618 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 40557 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 40496 29 100.0 0 ............................. | A [40469] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.8 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCAAATGGTCGTTTTTTTAAATTTTGGTTTGTCATGAATGGTGTTGATGCTGAGAGATAAAGTATGATGAAATGAAGTAGTTAAATTTAATTAATTAATGGTATTCATGGAAATGGATGTAGATAGAGAAGCTGCAAAGATTTTAGTGAATCTAATGTAATAACTTCTCTATACAACGGAGTTAGAATAATACCCGTTATCCAACCAATCCAAAACGTTTACTATAATAGCTAGCTTCTCCGGCATCAGATACCAGCACAACCTGTCCGGAAGGGCGATGGTGGCGTTTTCTGAAACAGGCTAATGTTTCCTCATCTGGACATTGGAATGTACCAGAATTTTTTTGCCACCATGATTTTCGGACGGATAAGCGACTTTTTTCCCAGCAGAAATCTATTTCATCAACTAAAGGGCGTAGCTGTCCATTAATGTCTTTTCTGGCGAGATAAACATCAACACTCTCTTCACCCAGACGGGTAGAAAATTCTCTATCTTTATCC # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 51268-50313 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYAV01000014.1 Salmonella enterica subsp. enterica serovar Newport strain BCW_2742 NODE_14_length_134276_cov_3.3019, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================= ================== 51267 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 51206 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 51145 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 51084 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 51023 29 100.0 32 ............................. TCATGCTTTCGACTAAATACTACCGCGACAAC 50962 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 50901 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 50840 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 50779 29 79.3 45 .....................CGCGC.A. CGGGGATAAACCGAACTAACGTCTATAGCTAAATGTAGAGAAAAC 50705 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 50644 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 50583 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 50522 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 50461 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 50400 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 50340 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ============================================= ================== 16 29 97.0 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //