Array 1 22135-22394 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWCO01000011.1 Meiothermus taiwanensis strain RP .10_length_53529_cov_17.9718_ID_19_bb, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 22135 35 100.0 36 ................................... TTGGGTTTACGCATAACAAACACCCCTCACGCTTGG 22206 35 100.0 42 ................................... ACTGACCTTGCCTCTACATCCGTGCTTGGCGGATATCGGCCA 22283 35 100.0 42 ................................... CCGACCGCCGCCGCGATGTGTTCTGCCGCCCGCGTGAGCATG 22360 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================== ================== 4 35 100.0 40 GTCGCAAACAAAAAGCCCCGTAAGGGGATTGCAAC # Left flank : ATCCGGGCAAACTGGGCCAGCTCGAGGCGGGTGGCCGCTTCGGGCTTGGGCAGCGCCTCCAGCAGGTACTGCTGGATGGCCGCCCGCACCTGGGCCGGAGAAAGATCGGCAACCATGCCCAAATACTACCCCCACACGCCCCCGCCCGACACCGCCTGCCAAAAATGCCTGCGCGATCGCACCCACCCCACACCAAACTCAACCCGAAACCAGTCCAGAACATCACGGAAGCACTTTCACCAAATAACCCATTCTGTTTTGCGCAAAATGCTATAATGCTCCCGTCGAGCAGTTCGATAGCGCACTTTGAAAGCCAGCTTTTGCGATGAAAAAGGCAAACCCACGCCACAAAAAATCTAAAAGCGTGGAAAAGTAAGCCCTCATCGCAAAAAACGCACTTTTTACCCCAGTTATCCACAGGGGAGCTGTGGATAACTCCACTTTCTCATAAATACCCCCTCCAGCACCCCTGTACAGCACGGCGTTTAACGGGGTATGCT # Right flank : CAAAGCCAAACTTCGTGGCTTGGCGCGGCGAGGAAGAATGCTTCCGTGTGCCAGCGTGAGGGTGGGAACTGGTGGGTTTTCTGCTATTCCAATAGCTTCATCAGTTGCTCGGGGCGGATTATCCGGGTTTTTCCCACTTTTTTTAGGGATAAGACGTGCTCTTCGTCCAGACTAACCAGGTAGTTGGCTTTGCCTTCGGTGGCAATAAGCAGTATCAGGTCGTCGTCGGTGTCTTGTGACAAGGGTTTGGCTTTACCGTGCGGCACCAGCTCGGCTCTGGCCTTGAGGGTGTTGATCATTGCCCCGGCTTGGGCAGGCCGGATAATATCTTTGAACTTGGCGTAACGGCTTACGCGACGCAGCTCAGCAAGCTGTGCCCTGGAGGTGAGGAGGGTAAACTGGCCGCTCCGCCAGGCCCAGTACACCCGGGCTACGCGGGACGCAGGGGCAATGAGAGTAGAAATGTAGATGTTGGTGTCGAGGACTACCCTCACTGTTTT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAAACAAAAAGCCCCGTAAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 31-181 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWCO01000190.1 Meiothermus taiwanensis strain RP .81_length_10865_cov_12.5013_ID_161_bb, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 31 29 100.0 32 ............................. CCAGGACACGCTGTACAAATCCCGCCTGCTMC 92 29 100.0 32 ............................. GTTGGCAACATCGAAAACTCTACTGCCGCCAC 153 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTATTCCCCGCACCCGCGGGGATGAACCG # Left flank : CGCACACCAAAATGGGAAGCGTACCAGTACG # Right flank : GCGCGGTTTGCGGTATGGTAGAACCCATATGTTTCGCTCGAGCCGCACCCCCACCGGAGGTGGGGTTTTTTTGGAGATGGACAGGGCCAAGGCCGAGGCCCGCGCCCGGGGCCTCGAGGTGATCGACCTCTCGATTGGAGCTTCCGACCTGCCCCCGCCCCCGGAGGCCCTGGAGGCCCTTAAGCAGGCCATAGACGACCCCTCTACCTACGGCTACTGCCTTAAGTCGGGCACCCTGCCCTTCCTCGAGGCCGCCACCGAGTGGTACTTCCGGCGCTACGGGGTGCGGCTCGACCCCCGGCGCGAGGCCCTGAGCCTGATCGGCTCGCAGGAGGGGCTGGCCCATCTGCTGATGGCTGTGGCCGACCCCGGCGATGTCCTGCTGATGTGCGATGTGGCCTACCCCTCCTATTTCGGAGCGGCCAAGGTGGCGGGCCTCGAGGTTCACCTGATGCCCCTGGGCGAGCACCTGCTGCCCGAGCTGGGGGCGGTGCCGGAGG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-14.10,-14.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-167 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWCO01000207.1 Meiothermus taiwanensis strain RP .97_length_7988_cov_11.3404_ID_193_bb, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ===================================================== ================== 1 17 73.9 53 ------................. TACTCCGCGACGGCAGCTACCACATCATCCAACTCCAACGTCGCACTCGGGCG 71 23 100.0 51 ....................... TAGTTATGCCGAGCAGGTGCTGTGGTCTGCCGGTGATGTCGCACTCGGGCG 145 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ===================================================== ================== 3 23 91.3 52 AGAGCTCGAGTGAGGATTGAAAC # Left flank : | # Right flank : CCMTACTGCTCACGCCTGTTCTCGATAGCCTGGGTGGATCCAGGAGTGGCGCGACTGGCTGCTTTCCATGGGCTTTGGCCGAAGAAAAAGCGACACATCCCTGCCCGCCCAGGCTCTACCGCTTCCTGTGGGCCCTGGAAGAGCAGGTCGTCGCCCTGGAAAAGGCCCTGCCCTGGCCTTTTTCGGCAGGGGTCACTGGGCGATAGAGAACAGGCTTCATCACAAGAGGGATATCGTGCTGGGAGAGGATGCCTGTCGCACCCGCAAAGCGGCCCAGGCCCTGGCCGCTTTGCGCAACCAGCTGCTGGGCTTCCTGCACCGGCTTGACGTTCCCGTGCTGCGCAGTGTGCGTAGCTTCTCCGTCAATCCCATGCCCCTCTTTCGCTGGCTCAGTGGGTGTATGTGAGGGGTGCATACGATAAAAGCCTGTGGCTTTACGAGTGATCGCTTGCTCATCGAGCCTTTTATGTTAGACTCTGCAACTGAGCAGACCTGACATA # Questionable array : NO Score: 7.10 # Score Detail : 1:0, 2:3, 3:3, 4:0.56, 5:0, 6:0.25, 7:-0.80, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGAGCTCGAGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA //