Array 1 62013-64821 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNXY01000028.1 Catenuloplanes japonicus strain NRRL B-16061 contig28.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 62013 30 96.7 31 .............................A TGGCCGACGGCGCGTCGGGGGCGATCGGTGA 62074 30 93.3 31 ............................GC GGAGCAACGCGGCGTCGCAGCCTCCGGGGAG 62135 30 100.0 31 .............................. TGCGCATGCGCGCCTCCTGCGGTGAGTCGGT 62196 30 96.7 31 .............................G CGCTCGCGAACGCCTGGGCGCTCTCAATCGT 62257 30 96.7 31 .............................G AGGCGCAGCGTAAGCCGGTCCTGTTCTCCCG 62318 30 93.3 31 ............................TC CAGCCGTGCCACCCAACCTGCTCGTGCCAGA 62379 30 96.7 31 .............................C ATTCCACCGCGCTGCCGCCGAGCCCGATCCC 62440 30 100.0 31 .............................. GGCGCGGAGGCCGCCGCGTGGACGAACGTGG 62501 30 93.3 31 ............................TG AGCGAGCGCGTGCGGCAGGTGGTTACCTGGG 62562 30 96.7 31 .............................A AGCCGTAGGACGCGGCCAGCGCCTCAGCACC 62623 30 100.0 31 .............................. GCCGGGACGTGTCCCGCTGAAGCCGGGCCAG 62684 30 100.0 31 .............................. CGCTGGGCAGGCTGCCCGGCCCGGACTCCAT 62745 30 93.3 31 ............................GC ACGCAAAGCCGCCACCACCGACTATCTGAAG 62806 30 96.7 31 .............................G CGGACGCACGCGCGGGCCTGGACGAGAAGAC 62867 30 96.7 31 .............................A ACTCGGGACCCGTCGGGTACGGCGACACCGA 62928 30 93.3 31 ............................TG TCGCGGTGGTCGGGGCGCTCGGCCAGCGGAC 62989 30 100.0 31 .............................. CAACGGGTCGAGCTCGCGCGAGGGAGGGCAC 63050 30 93.3 31 ............................AC CGACTGCTGGAGACCTTGCTCCCGCCACAAC 63111 30 100.0 31 .............................. CGGCCTACCCGGCGCCGAACCGCCGGACATC 63172 30 96.7 31 .............................G AGATCGTCTCGACGAACACCTACAACCGATG 63233 30 100.0 31 .............................. CATCGGACGCCCCGTACCGGATCGGCCCGAA 63294 30 93.3 31 ................T............C CGGGCGGCGGGGCGGGCACGAAACCGGCCAC 63355 30 96.7 31 .............................G CAATGAGGCCACCCTCCGTAGAGGATGGCCT 63416 30 93.3 31 ............................GC AGTCGCTCGATCGTGATTCTGTCCGTCTGGC 63477 30 96.7 31 ............................G. CTGCCCCTGCTGCACGACAATCAGCCCCTGG 63538 30 100.0 31 .............................. ACCCTGGCTTCGTTCTGCCGTGCCGTCCGGA 63599 30 96.7 31 .............................G GCGTCCGCCAGGTCACGTACGACCCGGTGGC 63660 30 100.0 31 .............................. TCGTGCGGCCGTACGGGCCCTCCGGCCGGTC 63721 30 96.7 31 .............................A ACGACGCGGCACAGATCGTCGTCGACCGGGC 63782 30 96.7 31 .............................G TCGGCATCGTCTGCGACGACGACGGCCGCTC 63843 30 93.3 31 ........................A....G CGCTCACCGTCCTCAACCAACTCGGGACGAT 63904 30 96.7 31 .........................C.... CCTGGCTGTTCGACCCGGCTAAGGTCCGCGG 63965 30 93.3 31 ........T....................G CTCTGCCGAACGCGCGGAGGTTCGACGGGAG 64026 30 90.0 31 ........................A...GA CCCGGATCGGGGTCTTGGTCAGCAGCCGCTG 64087 30 93.3 31 ................T............G GGTGCGGCGGCGCCGACGGGTGGGTCTTGAC T [64104] 64149 30 90.0 31 ..............G..........C..G. GCGGCAAGGGCCCGTTCTCGGCCGCGCTGAT 64210 30 76.7 26 ................T.A...CTCC.G.. GACGTGATTACCGCCGCGTTCGGTGG 64266 30 66.7 30 .G.CC.T..C...G.A..T.....A.T... GGAAGCTGGACGAGGTGCCGCGATGATCCG 64326 29 70.0 10 T..-...................CTCAAGC GCGGAGGAAC A [64335] Deletion [64365] 64366 30 93.3 31 ..................T..........A TCTCGCGGATCACCACCGGTACGTCGGTGGC 64427 29 86.7 31 G....-......................TG CCAGATCGTCGCGGCCCAGTCCCCGGCGTAC 64487 28 90.0 31 ........--...................G CGATCCCGGCGACCGGCTGGACCTCGTTGTG 64546 30 96.7 31 .............................G GCACACCCCGCCGCAGGCACATCCGCCGCAA 64607 30 93.3 30 ........T.............C....... GACGCGCAAGGGCATCATGGCCACCGGGCT CG [64625] 64670 30 86.7 31 .......TT...................GA CGGTCTGGTTGATGCTGTTCTGGAGCGCGAT 64731 30 80.0 31 ...........CT...........C..TGA CCGTTGACGTGATACGTCGTGCCGTCCTGAT 64792 30 73.3 0 ......T.....A.T..A..A......AAA | ========== ====== ====== ====== ============================== =============================== ================== 47 30 93.1 30 CTCTTCCCCGCGCACGCGGGGGTGGTCCCT # Left flank : GCGCCTCACCGCGGCTCAACGAACACATGCAACGAATCCTCGGGATGTGACTCACCATCGCCTACAACGATGCAAACCCAACAAATCGGTCGATACCACGGGACCTCCCGCACAACATCCGATCAGTCATTGAGCCGCAGTTTGATCCGCGGCAGTGCCCCGGGTACCCAGAGCTCCACCGCTTGACGGACCAACCAACAATCCAGCGGGCGCGGCCGCCGTTCGAGACACCTCCAGATCGTCCGTGGTGGACACAACTGTTGTCACCAGCTCTCAGCACAGTTCAGGACCACTCGCGCGTGCGAGGGGAGGAGACGGCGGATACTGTGGTCCGTGGCATCCGTTCGCGCGCATCTACGAGAATCATCTCAGCGGGAAGTCAGCCTGCCCCTCGGCGGAGCAGGTCCGCTCGGGATACCCTCGTCCGGAAAGCGTCTGACCGCCGAAGCAAAGTGAACGAAAATCCGCTAATTGATCTATAGCGCCCCAGGTCAAGAAGT # Right flank : AACGGCATTCAGCGAGGGCGGTGCCCGTTGGCCTCTGCCCGGTCTCGCGACTCAGGCCAGGAGCGAAGGCTGGTTGGGAGGTCGCCCTTGATCCGCGTGGGGCCGTGGGCTCCTCGCCGGCTCGCGGCCGAGCGCATCGGCGGGCACCGAGAAAATCGGCTTCTTCCACACCGATGAGTTTCGGTAGGCCGCGCGGTCTCACTCATAAAGCCGGCTACCAGGGAGCATCCGTGACGTCGATCAAGCCCATCATCAGCACCCCCGACCTGCCCCGTCTGCGCGCGTTCTACGAGACGGTGCTCGGCGCGACGCAGACTCTCCGCGAACCCGAGGAAGGCCCCGAGTTCTACGTCGAGCTACTGATCGGCGCGACCGCACTCGGGATCGTGCAGGAGAAGGACACCGAGATCGGCACACCGGTACGAATCATCTTCAGCGCCGACGTCGCAGACGTAGACGCGCTGCTCCCGACGGTCGAGACGGCCGGCGGCACGGTGCCC # Questionable array : NO Score: 5.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.03, 8:1, 9:0.24, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCCCCGCGCACGCGGGGGTGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-58] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //