Array 1 5219-8608 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEINI020000004.1 Alishewanella sp. 16-MA 16MA_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5219 28 100.0 32 ............................ AAAAAAGCTATTGTTTGCTTTGCCTATCCCTT 5279 28 100.0 32 ............................ AGCGAAACTGTTGCAAACGTCAAAATCTAACA 5339 28 100.0 32 ............................ TATACACCTTTTCTTTTTCGCGTCAAAACAAG 5399 28 100.0 32 ............................ GGGCTGCTTAGTGAATCGTTAGCTTGTACCAT 5459 28 100.0 33 ............................ CGAACAGGCTTTACCTGTTCAAGCTCCAACCTC 5520 28 100.0 32 ............................ TTTGGCATTGTGGATGGCGAGTTTGAGTTTTA 5580 28 100.0 32 ............................ ACTGCCGCGTTAGCATTGAAAGAGATGAGGAC 5640 28 100.0 32 ............................ AAACGCGCATTGCTGATCACTTCTTTGGCAAC 5700 28 100.0 32 ............................ AGTTGGAGAGCGGTCGCTTTTGGGTTGGCTCA 5760 28 100.0 32 ............................ TTGAGCGCTATCGGGATCGGTTTAAAGGTTTA 5820 28 100.0 32 ............................ TCAACGCACAGACGGCAAAGGGCTGTCTGATA 5880 28 100.0 32 ............................ AACCTCCAGTTCGTTAGCCCTTTTCTCAACAA 5940 28 100.0 32 ............................ ACCAGCCGCCAGTGTGCGTTATCGGCTTAGTT 6000 28 100.0 32 ............................ ATCTCCGGGCGCGTTAATCGTTCCGACTTGAC 6060 28 100.0 32 ............................ CGTCTCACGCACACCCAATGCCCCACCGTCAA 6120 28 100.0 32 ............................ TGCTGGTATCGTGTAATCTGAGTTAGGCGGAA 6180 28 100.0 32 ............................ ACAACAACTGGACACCGAGCCAATATATTGAC 6240 28 100.0 32 ............................ CCCACAGGCACTAGATTCGGTCTATTTGTAAA 6300 28 100.0 32 ............................ TAGTCAATCGCGCAGAATTGCATTATAATTAA 6360 28 96.4 32 A........................... CTTACCAATCAGCAAGCCCCTAACGTCAATAA 6420 28 100.0 32 ............................ GTACAGCCCGGCGTTAACTGCTGCGGTCATTA 6480 28 100.0 32 ............................ CAATACGCCCAACGGCAATCAGATTGCAACAG 6540 28 100.0 32 ............................ TTGCTATGCGTTTCGTTCTGGCCCGTTTGTTG 6600 28 100.0 32 ............................ AAGCGTGGTGAGAGTACCTTCGTGCGGGGCTT 6660 28 100.0 32 ............................ ATGCGGCAAAGATAGCGTGGAAAGCGCACGAA 6720 28 100.0 32 ............................ TATGAACATTCTTAATCGCACTTTTCACATTG 6780 28 100.0 32 ............................ ACCATCACTGTAAAAAACCCATTGGCTGTTGT 6840 28 100.0 32 ............................ AGTAGATGAGGAATAAAACAATGCGGACATTT 6900 28 100.0 32 ............................ ACGCTTAGCCAGCTGCATTGTGTTCGGGTTTT 6960 28 100.0 32 ............................ GGTATCAGTTGTGGGTTAGTATCTTGGATAAA 7020 28 100.0 32 ............................ ATTTTTAACGGTGGTCGAAAATGATTAAGGTT 7080 28 100.0 32 ............................ TACGACAATCTGACCGCCTGTAGTGCTTTTGG 7140 28 100.0 32 ............................ TGTGCTTTGATTATCCCGCACTTTCCCGCGCT 7200 28 100.0 32 ............................ AGCCGTTAGTTTGGGTGATAGGCTTAGTAGGC 7260 28 100.0 33 ............................ GTGTGGAATACCCGCTTTTCGACGGATGTTGAT 7321 28 100.0 32 ............................ GGTGACATAGACGGTAAACCTGCAGCAGAGCT 7381 28 100.0 32 ............................ AGCATAAGTCGCGGTCTGCGTATCTTCCAAAG 7441 28 100.0 32 ............................ TTTACAAAGTTAACGATAAGGAAATACCAAGC 7501 28 100.0 32 ............................ AGCAACCTGCTGCTGTAAATCCTGCAATCTTG 7561 28 100.0 32 ............................ ATTTGCAAGCGACGTTGTGTCGCCGATTGACA 7621 28 96.4 32 T........................... TGTGCGTTTCGGCGTCTTGTTAACTCTAATCC 7681 28 100.0 32 ............................ TAGCGCGTCATACGTGTCTGTGTTGCGCGTCT 7741 28 100.0 32 ............................ AAGAAGATTTAATTGATGATGCTAGGCAAGCG 7801 28 100.0 32 ............................ TGGGATATTTTGTGCAACTGTTGACATTTTGC 7861 28 100.0 32 ............................ TGGTGAGTGTACTGAGCTGATTAACTATGAGC 7921 28 96.4 32 ...T........................ ATAAACATCAGCCTTGGCGAGTTCCTTAGCTA 7981 28 100.0 32 ............................ GTTAAGATCCGACCCAGTGCGATCCTGATACT 8041 28 100.0 32 ............................ AGACGGCTCAGTTGTGGCTGGTGACTTTGCGT 8101 28 100.0 32 ............................ ACGCAAGACGTTACAGACGAAGCCATTACCGT 8161 28 100.0 32 ............................ ATGTCAACCGCTGCAAAAATATCAGTCATAAA 8221 28 100.0 32 ............................ GCTAACGCATGGCGATAGGCGTTACTGTGTGC 8281 28 100.0 32 ............................ GTTACGCTGCGGTTGCTGTTATCCGTAAAGTA 8341 28 100.0 32 ............................ AGGTAATCTTTTAATGCTGCTCTTACATCTTC 8401 28 100.0 32 ............................ ACAGGCACACTTCGGTATCGACTGCCGCTATC 8461 28 100.0 32 ............................ ATCATAAATACGCTCCCACAAAGCCAGCCACA 8521 28 100.0 32 ............................ GTAAATCCACAGCTTAACCTTTCCAAGCATTA 8581 27 89.3 0 .......C............A...-... | T [8601] ========== ====== ====== ====== ============================ ================================= ================== 57 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TAGCATATTGCATGATTTGCAAGGTCTTGATTGGTTGGGGCCATTGACTGGTTATTGTAAAGTGAGTGTGATTACTGACGTGCCAAAACAAACGCAATACCGTGTTATTTCGGTTAAACGTAGTAATTTAAGCCAAGCTAAATTAAAGCGATTAATTGCCAGAGGCAGCATTGATGCAGAAGGCCAAAAACGTTACAAAGTTAAGATGCTAAGTCAAGGTTTTGATAATCCATACTTGGATTTAATGAGCGCTTCAACAGGTCAAGTGTACCGAAAGTTTTTTGAGTTCAGTGATATTTATACGAAACCAGTGATGGGCGAATTTGATGCTTATGGCCTGAGCCATACTGCAACAATTCCGTGGTTTTAACCCTTTATTTTTGCTCTTTTATAAACTGCAATTAAAACAGTTGGTTACAACTATGCTGTTTTTATAGGGTAAAAATTTATAATTTACCCTAATAGCTTGTTTTAGCTTATTTTTATGTGAAAAACGTCTA # Right flank : ACGTTCAAACAAAAGTTTATTAATCACGTTATAAGCAATGGAGTCACTTCGTATCGTTAATCTAATGGGGTTTAGCCAAGACATGACTATTTAGTGTTGATTGATCAATTTAAGCAACAACACGCTTCATTCTGGTATAAACAATTTAAGAACGTAATACAGTTTTAATAAACCCCGCTACAAGCCGCTAGCTGCAACAGGCTCACGCATTTGGACGGCGGCTCAGTGAGCTTGGATCTCACACTAGTCATAAATTTTGCCTTAGATTTTTTGGTAAGTGGGTTTGATTCATTACAAAAAGTAATCCAAATTGGGCTGTTTACCCAAGGGGCCTTGCGGTATAATCCAGCAGTATTTTTTAGTCCAAGCTGCAGGCTTATTGCGTAACAGGCTGAAATTTAAGGCCTTTTGCTGCGATGGTTTTTCTGCTGCTGACCCTCACACTAAGTAGGAAAAAAATAATGGCTCAAAAAACCGTGTTACACGCCAGCCACCTCGCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //