Array 1 315815-315607 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGLR01000001.1 Pseudomonas sp. ZH-FAD Scaffold1_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 315814 28 100.0 32 ............................ TGCTCGGCCTTCTTGCCGGTGATCTGCTCCAG 315754 28 96.4 32 ...........A................ TGTCACGGTGACAGGTCACGCACAGGACACGG 315694 28 100.0 32 ............................ TGGCAGATCTCGGCCTCGCGGTTCTTCGGTAC 315634 28 75.0 0 .....................AATTTGC | ========== ====== ====== ====== ============================ ================================ ================== 4 28 92.8 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CGCCCAACCCGGCCATCAACAGATGGCTGAGCCAATAGGTGGCAACATAGCGCAGCCAGAACGTCAGGTCGGTCGCCACATCGTTCATCAGCCAGCCGACCAGCGATATCACCATGCTGACAACGCTCACCGCCAGGACTACGCCCACCAGATGCAGTGGCAGTACCGGCAATTGTCGTGAAGCCGATGTCGGCACGAGCGGTTCGGGCGCAAAGGGATTGGGTTCGGTCATTGGGCGATCCTTGTCGTAGATGTAGTCCCTGAGGGTTGCTGGGAGAATAACCGTCATCACGAGGGAGGAAAGTGCGAAAGCCTGTTTGCGTGCAGCTGTCGATGTAAGTGATCGGCTTTACATACCCTGATCGGCATACCCTTTTTTCCAGAACCCATTTCCATACCTTTAAAATCAAGCACTTGGTTGAGGATGGGAAAAAAGGGTGAAACCGCCGCGGCTCGGGCTTTGGCCTTGAGAAAAAATCACTTGCCCTCTATCTTTCCTA # Right flank : GGGCTGTTCGCTTCGCTCCTGAGCCCGCCCTACGCAAAAATCCGTGTCCGGAACCAAGCAGCCCGTCTAAGCGGAATCGCAGATACGACTCGCTGCCGCACGGACTTTCAGGCGTCCAAACTACGAAACATCACATGGCAATCCACCAGGCCATACCGGGCGTGGCGGTAGGCCTTGGGCAAGGTGCCAACAATCGCGAAACCGTGTTTCTGCCATAGCGCCACGGCCACCGTATTGGTTGCCACCACACTATTGAATTGCATGGCGCTGAACCCCAGCTCGCGCGCCACCTCCAGTGAGTGAGCGCAGAGCCGGCTGGCGACGCCGCGGCCACGGGCAGCCGGGGCGGTCATATAGCCGCAGTTGCACACGTGATCGCCCGGGCCAGCGGCGTTGGCCTTGATGTAGTAGGTGCCGAGAATCTGCCCGCCCTGCTCGGCAACGAAGGTGGCGCGCGGCAGTTCGACCCAGGTTTTCCAGGCCGTTTCACGATCCATGTT # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1457-149 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGLR01000089.1 Pseudomonas sp. ZH-FAD Scaffold89_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================= ================== 1456 29 96.6 31 ............................A GTTGGCCGGCTCTCATGTCAAGGCTGCTCGC 1396 29 100.0 32 ............................. CAAGATAGAACGGTTGCGGTGGAGGAAAATAG 1335 29 100.0 32 ............................. GTAAATAGAAAGTTGCTCTCGGTTAAGGGGCT 1274 29 100.0 32 ............................. GTGTTCCTGTGATCCAAGGCGCTCGGCAAATT 1213 29 100.0 32 ............................. ATGAAATGGGGGGCAAACCCAGCCTCTGAGCT 1152 29 96.6 32 .........................A... TCTGGCAGGTCGTCCCAGTCGTCTCTGCGTTG 1091 29 100.0 32 ............................. ATGCTGTCCAACGACTACGGCAGCGTGTTTAC 1030 29 96.6 93 .......................A..... CTTATATATCCAGGGAGAAAATCAGGGTTCTGGTGTTGTCCACCTGCGTGGAGGTATTCGGTAGCTGCGCCCGTCATCGCCGTTGATGAACCC 908 28 75.9 32 ..G..C......C-..TA.....A..... TCCTGTAGCGCACGTTGCGAAACCGCAGCAAC 848 29 79.3 32 .....C..T...CAA..........A... TATTTTGGGGATTTGAAGGGGTATTGACGGTT 787 29 100.0 32 ............................. GCTAATCTTGAGGCGTTGCTGGTAGTGCTGCC 726 29 100.0 32 ............................. GGCTGTGGGGGTGAGAAATGAGCAAGCGCGAA 665 29 100.0 32 ............................. CTGACCTCGTTATGCCGATTGGGTTATGCACT 604 29 100.0 32 ............................. CCAAAACAGCGGTCTCGATATGAACCTCGGGT 543 29 96.6 32 .........................A... GTGTCGGTGATCGGTCGGGAGGATGACGGCGC 482 29 96.6 32 .........................A... GTGGTCGGGATCGCACGGTGCCTATTGATACG 421 29 100.0 32 ............................. GATTCTGACGAACGTCATATGAGTCAGCCGAT 360 29 82.8 32 .GG..C.....A..T.............. AATCCACCATGCCGTGCAGACGATGAGCGCTA 299 29 96.6 32 .........................A... AACGTTGAGGGTGGAGAGCTGGTTGATGGTCA 238 29 100.0 32 ............................. ATGCTGTCCAACGACTACGGCAGCGTGTTTAC 177 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ============================================================================================= ================== 21 29 96.1 35 GTATTTCCCGCGTGCGCGGGGGTGAGCGG # Left flank : GGGTGCTGCATCGCAAAACTGGATGCAGACAAGCCGGATCAACACTGCCGAAGCAGCACGGCACCGTAGCGAAGGATTCTTGCTATTGCGGGCAGCGAAACCCAACCCAGCTGGAGGGCCATTCAAGAACTCGCTGTACCACTACCCGTTGGTCTGGGCCACGCTCACTGCATATTGCGTTGGCGATCAGGCCAGGATTGCTGACCTTCTTTCTCAATGTCGGCAGATCGGAGGTCGGCGCGGCGTAGGATGCGGTCGGGTAGCCGGATTCTCGGTGGAAGTCGTTCCAGAAGTCGAATGTACCTGGGCCTTGCGGGCAATGCCGGATGACAGCGAACAAAGCATCCTCTGCGGAGAGTATGCACTCGCAATGTCGGCTCTCCAGTGCCCATATTGGGATCGCAGTCTGCACAAGCCTGCGCTTGTGCCCACCAGTTTGCCTTAACCTGGCAAGCTACAAGATGTAGTGTTCGCACTATGCGGAAGATCAATATCTATGT # Right flank : GGAGCCCCTTCTTCGCCAAGAAACTCGCGACCTGCGGATTCCACGCTGACTCGGACACCCATTCCACGCGCATCCGGACAGTGATTCCACGCTGATCCGGACACTCATTCCACGAGCATCCGGACACCGACTCCACGGTCATCCGGACA # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.23, 8:1, 9:0.97, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTTCCCGCGTGCGCGGGGGTGAGCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA //