Array 1 948581-950561 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034719.1 Salmonella enterica subsp. enterica serovar Typhimurium strain RSE04 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 948581 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 948642 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 948703 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 948764 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 948825 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAG 948886 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 948947 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 949008 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 949069 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 949130 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 949191 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 949252 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 949313 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 949374 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 949435 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 949496 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 949557 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 949618 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 949679 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 949740 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 949801 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 949862 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 949923 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 949984 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 950046 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 950107 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 950168 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 950229 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 950290 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 950351 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 950412 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 950473 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 950534 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 966694-968353 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034719.1 Salmonella enterica subsp. enterica serovar Typhimurium strain RSE04 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 966694 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 966755 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 966816 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 966878 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 966939 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 967000 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 967061 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 967122 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 967183 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 967244 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 967305 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 967366 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 967427 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 967488 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 967549 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 967610 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 967672 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 967775 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 967836 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 967897 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 967958 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 968019 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 968080 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 968141 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 968202 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 968263 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 968324 29 96.6 0 A............................ | A [968350] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //