Array 1 276383-276049 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRXO01000002.1 Cronobacter sakazakii strain MOD1-H951 H951_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 276382 29 93.1 32 ...........A.............G... GTTGGGTAAAAATCCGTGTTTGTTCTTTTTAA 276321 29 96.6 32 ...........A................. CTTGTTTATCAGGCAATCAGCGCGGTAGCCAA 276260 29 100.0 32 ............................. CGTGCGCAGGTCGCCGAGTGTGTATTGCGCCA 276199 29 100.0 32 ............................. CGAAGACCAGAGAATAGCCATAATTTGGCGGT 276138 29 100.0 32 ............................. TCGGATATTGTTGTTGAGCTGTCCCGCAGAAA 276077 29 96.6 0 ............G................ | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.7 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCTGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAGCGTCCCGCCCCGGCTTCGCGGACAGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCGTGGGCCACGAATAATGAATCCGGCTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTGGACGGCCTGCGCCTTGTCTCTTTTTTACCGCTTGAAAATCAGTAAGTTAATCGTTCTTTAACAATGTGAGATTGTGAACCAAATGTTGGTGGGATGTTGTTGCCTGAAAAAGCGTAATAAATACAGTTATATAGTTTTAGA # Right flank : TTATTGAGTAGAATCGTCTGCCTTGGTGGGTGCGCTTCGCTTACCCACCCTGCCTATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGTGCCAGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGTGGCCTTTGGCGGCTAATATCAGGTGCGGTTATTTACTATAACGTTTATGTTTTCATTTATGAGCACTCAGAAATGGATAATTCACTCAGGCGATTAC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-14.00,-14.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 304030-302782 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRXO01000002.1 Cronobacter sakazakii strain MOD1-H951 H951_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 304029 29 100.0 32 ............................. CGTTCAGAGGCGGTAACAGTGGTGGTCAGCAA 303968 29 100.0 32 ............................. CACAACAACGTCAATGGTGGAGTAGAGCATTC 303907 29 100.0 32 ............................. TGCCGATACCGGCAATTTTTCGGGCGGCGGTA 303846 29 100.0 32 ............................. TCTCAGGGCATTGAATGGGTTGCCAAAATCAA 303785 29 100.0 32 ............................. TACTCCTTCTAGTGCCGATGCCGGCAATTTTG 303724 29 100.0 32 ............................. TTCGTTGGCGCGGCTGTCGAAAAATGCAGGTA 303663 29 100.0 32 ............................. AACGCGCAGGACCTGGTAATTATCGCGGCTCG 303602 29 100.0 32 ............................. CCAGCGCGCCGAAACAGAAGGGCCAGCGCTAC 303541 29 100.0 32 ............................. ACGCCACAGAGTCTATTATCAACGCACTGGCC 303480 29 100.0 32 ............................. CGCATTCCCGGCTGCCTTTACGCTGGCTGCGC 303419 29 100.0 32 ............................. CACCTGCGACCGCCGATTTTGATGAGGCGATC 303358 29 100.0 32 ............................. CGACACAGCGATAACAGAGCCGACAACAACGG 303297 29 100.0 32 ............................. AAAATATAGGTACGCTTATTAGATACCAGCGT 303236 29 100.0 32 ............................. CTCTGGCCCATCATGACGGACTCATCCTGCGT 303175 29 100.0 32 ............................. GTGGCCCAGCGCCGGAAGGCTTCGAAAGACTT 303114 29 100.0 32 ............................. CATCCACTTCGCGCCGCGGCGGTATTTTTTGC 303053 29 100.0 32 ............................. ACCGCTATCCAGTGGGGGATTTACAGCCCTAA 302992 29 96.6 32 .C........................... GCTTATATCCTCTCCTGCCTGATTGCCTCCGG 302931 29 96.6 32 .C........................... GGCGGTTTGGATTTGGAAATTTGATACAACTG 302870 29 96.6 32 .C........................... AGCTCATGAAGCGCAACAGCTTCGGCTCTCTG 302809 28 75.9 0 GC.......-...C...C.TA........ | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.4 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCGAACAACATCGCGTTTATTGTCGCCAATATCAATATCAACTACCGTCGGCCTGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGATCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACTTTTAGT # Right flank : CCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGTGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTGCA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //