Array 1 75104-73997 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE375759.1 Serratia marcescens MC460 Contig604, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 75103 28 100.0 32 ............................ ATACAGTCGGAGATCAACCCGGCGGCGAACGG 75043 28 100.0 32 ............................ ATAACTGACGCTTAGCGGGTCAGTCTTCCACC 74983 28 100.0 32 ............................ TCAGTGTTGCCGGTGCCGCTTGCTGCCGCCAG 74923 28 100.0 32 ............................ TGATGGCTCAAGCAATGAGCATAAAGGTTGGC 74863 28 100.0 32 ............................ ATGATCGGCCCGCTGCCCAAGCGCATGCGCGC 74803 28 100.0 32 ............................ ATAGCGCAGTCCTTCACGCGATTAGCGTATGC 74743 28 100.0 32 ............................ GTATGCACTGTGGACTCCAGGTCATCGAGGCT 74683 28 100.0 32 ............................ AGAAAGGCATTCCGCCCTGGAAGATTCACCAC 74623 28 100.0 32 ............................ ATTCGGACGCGCTGCTGAGCGCCCAGGCGAGA 74563 28 100.0 32 ............................ AATAGGTTGGCTCGTAAAAGTGAATCGTGTCC 74503 28 100.0 32 ............................ CGGGTGCGTGGGCGCCCATCATTAGCTAAAAC 74443 28 100.0 32 ............................ TGGCACCGATTGGCAGGATATTACCGGCACGT 74383 28 100.0 32 ............................ ACGAGCATGGATAGTCGGGTGCGCGTGTTCGT 74323 28 96.4 32 ..........................G. GCCCCGCCAGCGCCAGCAGTGCCGGATGACTA 74263 28 100.0 32 ............................ TGGCTAATGACCCAACTTACAGCACGGCAAGC 74203 28 100.0 32 ............................ AGGGAAATCCAGGCCGATGAGGAAACGCGCAC 74143 28 100.0 32 ............................ ACGGAGGTGGCCGGCAGCTTGATGGAGAAGAT 74083 28 100.0 32 ............................ TTCGGCGGCCGGCCGCGAGCGTCTAGCCATCA 74023 27 82.1 0 .........T...C.A....T..-.... | ========== ====== ====== ====== ============================ ================================ ================== 19 28 98.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGCTGGGGGGATTCGACTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCTCATCCAGGCTGTGCCTGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGTATACGCCGCCGAGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTTATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCCGCTTGTTCCTGAAACAGGGTCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCTCCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACCGAGGGATTTGACTGTTGTTCTTTAATAATCAGTTTGTTAGAGGCTATTTTGCTCA # Right flank : TAGAAGGGATAAAACTTTACCGACACCTGTTAACCAGGAAGCAAATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGCTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAGCGTCAATTCCCCTTTGCCGCGCAGCGCCTTGGCGCCTTTGCCGGCCTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGAGAGTGGGGAAAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTACCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 86814-84026 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE375759.1 Serratia marcescens MC460 Contig604, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 86813 28 100.0 32 ............................ ACGATGCCGTCGGTGTTCGCCGAAACGACGCT 86753 28 100.0 32 ............................ TGTGCGCAGATCCCTAACTGGATTTATGACGG 86693 28 100.0 32 ............................ GGCGGCCGTCAGCTGCCCGTCGCTGCTTGCGC 86633 28 100.0 32 ............................ GTCCCCCTGCCAGGCACTCATGAGTCGACAGC 86573 28 100.0 32 ............................ AAAATCAGCCCAGATTGTTGCATATCAGGCAC 86513 28 100.0 32 ............................ TGCCAGCGTCACGGCGGGCTTCGACCTGTGCG 86453 28 100.0 32 ............................ AACGAGGGTAAATTCGTCGCCAAAATGAAGCA 86393 28 100.0 32 ............................ TTTCACTGCGCCGCCCTTCACGCCCCGGATGG 86333 28 100.0 32 ............................ TATGGCTATCTCAACGATCCAAACTTCTTGCC 86273 28 100.0 32 ............................ AGAAAGCCGGAGAGCTGGCCGACGATCAGGAC 86213 28 100.0 32 ............................ ACTCTATGCGGCAAACCTCACCGACCCGCATG 86153 28 100.0 32 ............................ TTTGCTCCAGGCAGCTCCAGGTGCATGCGTCA 86093 28 100.0 32 ............................ ACAGATGCGTTATATGGGAACCCGTTCGCGGT 86033 28 100.0 32 ............................ TGATTCACAGCGGGCAAAATGCTGTCGGGTGC 85973 28 100.0 32 ............................ GCGAACAAATAACCTACGTTTCCAGGATTGAT 85913 28 100.0 32 ............................ AGTTATCGATTGCCGAGCGCGCCGCCTTTGGT 85853 28 100.0 32 ............................ CCACTGAGCAAAGCGTGGGTCATTGACGTAAT 85793 28 100.0 32 ............................ TTCACAATCTTTCCTTTCTCGTCGCGGTGATA 85733 28 100.0 32 ............................ TGCCGTATCGATGTCGGTCAGCACCACCCGCC 85673 28 100.0 32 ............................ TGTCCGAGGGTATCGATTGCACCCGAGAGGGA 85613 28 100.0 32 ............................ TTACTGGCCTTCTCCAGTCTTTGAGCCTTTTC 85553 28 100.0 32 ............................ AGCGCGTCGCGGACGTGATGACCAAAGGTTTC 85493 28 100.0 33 ............................ ATGCTCATTTTCGCGGGCAAACGGCGCAAATCG 85432 28 100.0 32 ............................ GATCAGCGGTAGGGATGAAATCGCCCGTTCCG 85372 28 100.0 32 ............................ AGTAAGTGGCTTTGGTAGGTGGTGCGATTAAC 85312 28 100.0 32 ............................ GACGTCGGCGCGGATTTCGGCATGGAGGCGCC 85252 28 100.0 32 ............................ ATCAGGGGCATGCAACATGGCAGAGGATAAAC 85192 28 100.0 32 ............................ ATAGTTACCCCTTGCCGAGTTAGAAAATGACC 85132 27 96.4 32 .......................-.... ATGTTTTTTTTCTCAAACCCCTGAGCGGCTTT 85073 28 100.0 32 ............................ TGGAACGCAGTAGTGCGGGGGTCAAATACGAT 85013 28 100.0 32 ............................ GGACTTCAGCCTGTGCTAAGAGCGTGACGAGC 84953 28 100.0 32 ............................ TCCTGAGGTGTTTGACCGCGTCTTCGGATTTG 84893 28 100.0 32 ............................ TACGCCACCGCCTGCAGCGGCTCCTGCCGATA 84833 28 100.0 32 ............................ TGTATCGAACATCGTCAATGTGACGGTAAATA 84773 28 100.0 32 ............................ GAAACTTCGCCATTCCATCCGGCGCCGTCGGT 84713 28 100.0 32 ............................ AATGATAATTTCTGCCGTGCCGGCATCCTCTG 84653 28 100.0 32 ............................ AGGGAATCGGTTGATATCGCGCTGGTACGCCA 84593 28 100.0 32 ............................ AGCGACCGGGAACCCGTTCGCGATCGAAACCC 84533 28 100.0 32 ............................ ATAGGGATCGTGGCGCGCGTCACCAGCTGATA 84473 28 100.0 32 ............................ TTGGGGTGACGGCTACGCCGGGACGCGCTGAC 84413 28 100.0 32 ............................ GTGCAGACAGCACTGGCACGATCACGTTAACC 84353 28 100.0 32 ............................ ATCATGGAAAGCCTTTATTCTAAAAAGAAATA 84293 28 100.0 32 ............................ TCGGCCTGTTCCCACGTCAGCAACCATGTGAA 84233 28 100.0 32 ............................ TAAGCAGCAAAATAAACCTCAACAGTCGAATG 84173 28 100.0 32 ............................ GATGGATACCATTGCCAATCAGGTGGCCAGCA 84113 28 100.0 32 ............................ TGGCGAACGTGGACTATTACGGCGACGCCGCT 84053 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 47 28 99.9 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCCTGTTTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGCATTGTCGCTGGCCGGATACGGAAAGCGCGTTCCAGGTCTACCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAGTCGCTTTTAACGACCGGCAATAGATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGCTGGCAATTCAGGTCATCAGTGGTGTCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCTAAAATGCAAAGATGTCACCTTACCCCGTTCTTGGTTGCCGAACCCTTTTTTGAGTGATACTTTTAATTTATTGATTTTAAATCATATTTTTAATCGCTTTAAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : ACAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAAGTGCACTGCCGTACAGGCAGCTTAGAAAATCGGCCGAGCGGGCGTGAAAACGGTAGGAACGTGCACTGCCGTACAGGCAGCTTAGAAAGATAAGGATAAGGCTCGACGCCGTGCAGCCGCGTGCACTGCCGTACAGGCAGCTTAGAAAATTACTGAACACCCACCAGCGGAGCAGTCAAAGTGCACTGCCGTACAGGCAGCTTAGAAATTCGCTTCCAGCTCTGCCAGTAGTTCGAGAACGTGCACTGCCGTACAGGCAGCTTAGAAAATGGGAATGATGCCAAAATTTGCCAGTCCGGCGTGCACTGCCGTACAGGCAGAATATAGGAAAAAGTAATATGTATTTGATACATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [8.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //