Array 1 23701-22210 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAACUY010000001.1 Actinomadura fibrosa isolate LMG 29177, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23700 29 100.0 32 ............................. GGGCCGGTCGGGTCGTGGTCGCGGGCGAGGAA 23639 29 100.0 32 ............................. AACCATCGCCTCCGCGACTACCGGCTACGGAA 23578 29 100.0 32 ............................. GGGTACATCGGCCAATGCCCAGTGCAGGACTC 23517 29 100.0 32 ............................. GTGCCGCCGCTGACCGGCACGCCGCGCCCGTC 23456 29 100.0 32 ............................. CCGCGCGAGCGCGGGGAGGACGGCTGGCGGGA 23395 29 100.0 32 ............................. GTCCCCGAGATCGGCGCGGTCGCGGAGGTCGA 23334 29 96.6 32 ............................T TGTACGCGCTCGCGGAAACGGGATGGGACCCG 23273 29 100.0 32 ............................. AGGGCGTCCATGGCGGCGCGGGCGGTGGCGTA 23212 29 100.0 32 ............................. CGGGGATCCTGCGCGGTGAGGTCCCGCCGACG 23151 29 100.0 32 ............................. TCTTGCGGCAGAGCCACATCTTCAATTGCCCT 23090 29 100.0 32 ............................. ACGATCTTCTCGGTGAGGTCGCGGGGCACGTA 23029 29 100.0 32 ............................. GATGGCCACGGTCAGCCCAGGGTGATGGTGAG 22968 29 100.0 32 ............................. GCCTGCCAGTGGGGCGGCGGCGACGCCCAGAC 22907 29 100.0 32 ............................. TGCACGCGCGGGCAGGCCCACACCTCCACACG 22846 29 100.0 32 ............................. AGGTCGGTCATCTGTCTTTCCTCTCGTTGTGA 22785 29 100.0 32 ............................. CATTCTGGCGGGGCGGGGGCGGTCAGGCAGCA 22724 29 93.1 32 .......................AA.... TAGGAGAAGGTCGAGTTCGAATGAGGCACGAC 22663 29 100.0 32 ............................. GTCCGCGCCACGTGCGAGTCGCGGTGGTCGAT 22602 29 100.0 32 ............................. GATCTCCGGAATCTTCCCGCCCTTGCCCCGAA 22541 29 100.0 32 ............................. ATCTTGTAGGTGATGTCCTGCCGCATCCCGAT 22480 29 96.6 32 ...............A............. GGCTGGCGATGCTGACCGAGCTGTCGGTCGCG 22419 29 100.0 32 ............................. ATCCACGCAAAAGGGGATGAGCTCCCGTTCCA 22358 27 93.1 32 .............--.............. CGAGGCCCGCAGATGGCAAGCCAAGCGAATCA 22299 29 86.2 32 .C.......T....TA............. TTGGCGTCGGAGACGCCGCCGCCGTAGACGCG 22238 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 25 29 98.6 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : GCGCATCCTTCAGACCGCCCGGCAGAGCCGCAGCGATCACATCCCGCACCTGGGCTGGGAGCCACTCGTCCCACAACAACCCCGCAACCGCACCACTATCGGCGAGATGACGCCACAACGGCAGCCAGTCGTCCTCATCGCGATCATGCTTCGCCCACACCTGCCGCGCAGCCACAGACAACCCAGACCCGAGCCGCGCCAGCCCTGCCATCAGATCCAGCACACGGGCATCCAACTCCTCTGACCCGGAGCCGTAAGGCTCCTTGACCAACCCGGACCGAACCCGGACAACCCACTACCGACCGCACGCGAACGTGCTAGGAGAGCGACGACAGCCGCCGTCGTCGCAGAGAAACGAGATGACATGCTTCTCTCGTCGGCAGAGCGGCATCAGGAAGGACGCAATCACTTGCGAGAAGGCATCCATGTCCGAGATGTCCGGATCTTAAGAAGTGCTCTGTTCCGGGCTTTCAGCCGCAGGAAAGCCCAGTTCAAAGAGT # Right flank : TCGACGTCGCCAAGCTTGCTGATCTCGCGTGCAAGCGGGATCCGCGTGGTGTTCCTGAGACGCCTCTCACGTGTGACTGTGAGTGACTGATCGCTTCGTGGTCATGTGATCGGGTGGTGGTTCCGGAATTGAGGCTCGCTGGTGTGGCCATGGTGTGGCCAAACGGCCTGGAAGTGCATTGGATCTTGGTGGATGGGGTGGCCGCATGTCCGCTTTTCAGTGGACTTTGTGGCACGCGGCCACCCCCTGTGGACGGGTTACGGCGCTCTGCTAATGCGGTTTGGGTTTACCGCCCATCCGGGGTTCAAATCCCCGATCCTCCGCCATCTACCTGCGGGGATGTGTCGCGCGACGCATCCCCGTAGGTGCGTTTCGAAGCCGTGGCTGCACGAAGCACACTGTGTGTCCTCGGCGGTCGCCTCCTCGGCCACCGTCTGGAGGCTCCGGTGGTGGTGACGCAGGAGGAGCCCCGCAGGTCGGCTCGGCGGCCTGCTTCGCTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 33226-35329 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAACUY010000001.1 Actinomadura fibrosa isolate LMG 29177, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 33226 29 100.0 32 ............................. GCGTCCGCAGGCTGTGCAACCTGACGATCGCG 33287 29 100.0 32 ............................. ACCTCGGGCTGCTCGTGGCCGCGGAGGAACCC 33348 29 100.0 32 ............................. AAGCCCGCCGCGACGTCGAACGATTCGGCGGA 33409 29 100.0 32 ............................. TCGACTACGAGGCCCGCCTGGAGCGCGCGGAC 33470 29 100.0 33 ............................. AACTCCGCAGCCCCGAGCTTCATCTGCGGATGA 33532 29 100.0 32 ............................. CGGGACGCGCCTGCGGACGGCTCAGCGGACGG 33593 29 100.0 32 ............................. CACTGGTCAGTGGGCCGACTGGTCCATCGACT 33654 29 100.0 32 ............................. GGGGCGCCGTTCTGATGGGCGCCTGGCACGAG 33715 29 100.0 32 ............................. CGGGACCTACGCCGCCCCTCCTCCCCCCGGGG 33776 29 100.0 32 ............................. CGGGACCTACGCCGCCCCTCCTCCCCCCGGGG 33837 29 100.0 32 ............................. CGGTAGCGAATAGGAAAGGAGGAAGGACCATG 33898 29 96.6 32 ............................A CTCCAGCCCAAGACGGCGGGTGAGGAATTCCT 33959 29 100.0 32 ............................. CTGCGGGCCGCGCTGCTCCAGCAGACCGGGAG 34020 29 100.0 32 ............................. GAGCGCGTGCTGACCAGGCCGTTCCCGCACCT 34081 29 100.0 32 ............................. GCGTTCGCCGATCGCCTGCGCGACCTCGCTGG 34142 29 100.0 32 ............................. CCGAACAAGACCTTCTCGATCGCCGCGGGCGG 34203 29 100.0 32 ............................. ACCGTCACGGTGTACGGCTCTGGCGTCTCGGG 34264 28 93.1 32 ....-.T...................... GGGCTGCTCCGCTTCCTCGTCGGAGGCTCCCA 34324 29 93.1 32 ........T.....T.............. GGCGGGTACCTGTCCTCGACGACGCTCGCGGC 34385 29 89.7 33 .................T......A...T GGCCACCTGGCGGGGGGCGCGATGACGACGGCG 34447 29 100.0 32 ............................. GTCAAGGCCCGTGCCGAGGCGATCGCCGAGAA 34508 29 96.6 32 .................A........... GAGTTCTGGAACGGCAACAGCGGTAACGCCGT 34569 29 93.1 32 ........T.....T.............. CGGCGGGTCGCTACCAAGATGGTGGCGGACGA 34630 29 96.6 31 .........................C... GGTGTGGGAACGCAGCTCTTCCGCACGCGGT 34690 29 96.6 32 .........................C... AGGTCGAGCATCCGGTCCGGGTGCTCCTCACC 34751 29 100.0 32 ............................. GTGATTGCGGTCATGACGATCGCCCGCGCGCT 34812 29 96.6 32 ...............A............. GACATGTCGATCTACCGGAACGGCACCGACCT 34873 29 100.0 32 ............................. GCGCTGAGCAGAGCCGCACGGGCGGCCGGGGT 34934 29 96.6 32 ............................T GACAAGGCGGACGTCACGACCTCGCGGCCTGG 34995 29 89.7 32 ..A.................A....G... AGCTCCAGGGCTCCGCACCGGATGAGGTCGCC 35056 29 96.6 32 ...........G................. TGCGCCGGGTACAACCGCCGGGGCTGGGTGTT 35117 29 100.0 32 ............................. CGAGAGGACGAAGTGATGGGGAAGCACGACAA 35178 29 96.6 32 ........G.................... AAGTAAGACAGCCGGCGAGGCCGGGTCGCCAC 35239 29 96.6 31 ..............T.............. GCGGGTGCCGGACCACGACTGGGCATTCGGC 35299 28 93.1 0 .......................-...T. | T,CG [35306,35312] ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.7 32 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : CAACTGCCCCGCCGGCCTACGCGGCTTCCTCACCCGCTGGCTCATGGAGATCGCCCCCGGTGTCTTCATCGGCGGCCCATCAGCACGCATCAGGCAAGCCCTCTGGGACGAGGTCCACCAATACGCCGACACCGGCCGAGCCCTCCTTGCCTACAGCACCAACAACGAACAGGGCTTCACCTTCGAGTCCCGCGACCACAAATGGCAACCCATCGACCACGAAGGCCTCACCCTCATCCGCCGCCCCAAGAACCAACCCACCATCACAGCCACACCCCCACCGGCCGGCTGGAGCAAAGCCAGCAAACGCCGCCGCTACGGCAAACGCTAACCACCGAACGCACGCCTCTCAGCGCCCACGAGCATCCGCATCCTCTCCTGCTGCGACCGCTCCACGACCCGTCTACGCCACCCATGCGGATGTTTGATGCGATATGACCGGATCGCAAGAAGTGCTCAAAACGAGACGTCCCCGCCGATAGACCCGCAGGTCAGGAAGT # Right flank : CGCGCAGGGGATCTCGGCCAACAGGTCCGGATTAACCGTTGTGGTAACGCCCGGAAGGGCACGCGAGCGCTCGTTGGCGAGGCAGTTGCGTGCAGTGGTGACGTATCAGTCGGTTCGAGGAGGGTGGTGCGGGGTTGGGCGTGTCTGGTGCCAGCTGTGGCGGTAGCAGTGACGTCCCAGGTAGGGGCTGGTGAGGATGTGGTGGATCTCTGTCCATTGCATTAGTTCTCGCCATGGGACGACCGGTAGCGGATGTGGTGCTGCGGTGAGGGCGTGGTTGTAGGCGGTGAGGGCGTCGCCGATTGTCACTGGTCGAAGCGGGCCGTGGGTCATCGCGAGGCTGACGATGAGTTTCGCGAGGTCGTATCCGAACGGTGCGAGGGTGAGGCAGTCGTAGTCGACCATGGTGACCCGGGAGCCATCGACCAGGAGGTTGCGGAGGTTGGCGTCGGCGTAGATGGAGGCTGGGGCGTCGGCTGCCGCTTCGATGGCCTGGACGG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 44569-45389 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAACUY010000001.1 Actinomadura fibrosa isolate LMG 29177, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 44569 29 96.6 32 ............................T AACTACGGTCTACGAATCCTCGGCAACTACGA 44630 29 100.0 32 ............................. CGGCCATCACGTGCAGGTCATGGGCATGTCTG 44691 29 96.6 32 ............................G GAGACGTCGGTCGTCGTGACGTGGGTCGTGAT 44752 29 100.0 32 ............................. CGCCGGACGGTACCGAGACGCGTGGGTTGAGA 44813 29 96.6 32 T............................ CTCCCCGGCGGCGGCGGAGCCGTCCAGATGAA 44874 29 100.0 32 ............................. ACCTCCGTGCCGTTCTCCATGGCGGTGGCGCA 44935 29 100.0 32 ............................. CCCGACCCCGTGATGATCCGGATCACCAGCGG 44996 29 100.0 32 ............................. ACCGCGAGGCCCGCGTCCATCAGCTTGCGGAG 45057 29 96.6 32 ..................A.......... TCGAAAAGCACCAGCGATCCCTGCCCGACTCC 45118 29 100.0 32 ............................. GAGAAAGGGACGTCCACCTGGTTCCGGTTACA 45179 29 96.6 32 ......................A...... TCCGCGACCTCACCTGGCGCACACCCGCCGAA 45240 28 96.6 32 .....-....................... CCGAACGGCTGCCGGCCGCCGAGCCAGACACC 45300 29 86.2 32 .......TT....A..........A.... GACTCGTTCATCGCAGAGCTCACTCGCCTGTG 45361 29 86.2 0 ..A.....T.................TT. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 96.6 32 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : CTCGAACCCGCCCTGTCCTACGCCCACCGAGCGCTCGGCACGCTGTCCGGCCAGGTCGACTCCGCGCGATGCCGCAGCCACCTATCCCGCTTCAGCGAACATCTGGCCCCCTACCGACGCAACACCAACGTCCGGACGTTCCTCGACCAAGTAAAAGCAGCCAAGGAACCCAGCACCCGCCAGCACACCTGATCAAGACCCCGTAGAGAATCGAACGGCATGAACTCGTCCAGGCCAGCGACCTCGAAGACCAGACCGCCCCCGCGCGGGGATGAACCCGGCCCGCAGCCTGCGGGCAGGAGTGCGTGGTGGCAGTCCCGCGCTGCGGCAGTGTGCCGGCAGCCACGGGAGCTTCCCATGGCCGCCGTCAATCGCCCTCCTGCTGCGGTCGCTCCACGACCCACCTAGGTCACCTATGCAGCCGTTTGATGCGATATAGCCGAATCGCAAGAAGTGCTCAAAACAGGCGTCCCCGCCGATAGACCTGCAGGTCAGGAAGT # Right flank : CAAGCCCGCTACCGCGTCGACACGCCCGCGGTAGAGCGATCCCTCACCGAACTCCAGAACTACCTGCGCACCTGCTGCCCGCCCACGGATGGGGACGCAGCCGACGCCTGAGTGCACGATGGCCGTCGGCATCCGCGCCAGGAAAGCGCTGAAGCACTTTGCACTCCTCGGGGCGAGCGGTGCAGGCTCAGGTCACGTGACATGTGCGCTGCCCGTTCGGAGCGCTTGTGGGAGTGAGGAAGGCGGCCCCAGGCGGGACGGGACGTGGATACGCTTCATGTCCTACAGACGTGACAGTCGGTGTTCGGGGACATGAGGTGAGTGTGATTAGTCCGTACGTGCGCCGACTGCGGCTTGCGGCGGAGTTGCGCGAGCTGCGGGAACAGGCCGGGGTCTCAGCGCAGGACCTTGCCAAGCGGTCGGGCGTCTACCGGCAGATGATCAGCAAGCTGGAGAACGCGCACGTCGCACCGAACCAGGAGGATGTTCAGCGACTGCTG # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12471-11219 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAACUY010000055.1 Actinomadura fibrosa isolate LMG 29177, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12470 29 96.6 33 ............................A CGTGCGAGCGAAACAGACGGATCGCACATTATC 12408 29 96.6 33 ............................A AGCCGTGGAGCAGATGGAGAGGATCGTTCGGCC 12346 29 96.6 32 ............................T GCCAGGGGAGAGGCTGGGGACTCATCCTCGTG 12285 29 96.6 32 ............................T GATGCATGGGGGTGCGCAAACAATCTCAAGGC 12224 29 96.6 32 ............................C CCACTCCACCCGAGGGGAGCCCATGACCGCTG 12163 29 93.1 32 .........................C..C GCGCTGTTCAACGACTTCGCGGGAGTGAGGTC 12102 29 100.0 32 ............................. CGCGCGCTCGCCGAGCGCGGCGACCCCACCGG 12041 29 100.0 32 ............................. CGCCACACGCCGCCGCGCCAGATCGGCGGCGC 11980 29 96.6 32 ............................C GCCCACCAGTTCGTCGCGTGGAACCAGATCGA 11919 29 93.1 32 ...........A................T CCGGGCCGGGTCGGGTCCGGCGGCGGACGGCT 11858 29 93.1 32 .........................C..C CACCGTCTGAAGCGTGCGGCCGACGAGGAAGA 11797 29 96.6 32 ............................C CGCACGATCCCCGGACCGCCGGTGTCGGGCAG 11736 29 96.6 32 ...........................T. CGGATGGTGAGCGCAGAGAGGTCGCCGTGGCC G [11719] 11674 29 100.0 32 ............................. ACTCCCAGGTGTCTGACAGAAACCGACTGAAG 11613 29 100.0 32 ............................. GGCTGCACGCCGCTGGAGCTGCGCACGGGCGC 11552 29 100.0 32 ............................. CGCCGGGACCTCGTCGCGATGGTGTGCGACCT 11491 29 93.1 32 ...........A.......A......... TCACGATCGGGCTCATCCCCCACGCGGTCGAG 11430 29 96.6 32 ............................C GACGGTCAGCCTCCTGGGCGGGCGTCGCTTCG 11369 29 96.6 32 ............................T TGGCTCGAAATGGAGCCGCGGCCGTCGAATTG 11308 29 89.7 32 .......................CA...C CGGGCGGTGTCGCGCTCGCCCGCGACGGACCA 11247 29 93.1 0 ..........................T.A | ========== ====== ====== ====== ============================= ================================= ================== 21 29 96.2 32 GTCGGCCCCGCGCCCGCGGGGATGGTCCG # Left flank : CTAATCCCCATCGACGAGGACGTCAACCAACTCTGGGACGAAAAGGCCGGAACGGTCACCGGCGGCGTCAACTGGTCCGGTAGCGAGGATCTGATCCAGCCCGGCATGGGAGACCAGCACCTCGCCATCATCGGCCCAGAATTCGCCCCACCACCCAGCTCCACCACCACATGACCACCGTCGTCGTCCTCATCGCCGCCCCCGAAGGACTCCGCGGACACCTCACCCGCTGGATGGTCGAAGTACACGCTGGCGTCTTCGTCGGAAACCCCAGCCGCCGCGTCCGCGACCGCCTCTGGGACCTGCTCGCCACCCGCATCGGCGACGGCCAAGCCATCCTCGTCGAGCCAGCCACCAACGAACAAGGCTGGTCCGTCCGAACCGCAGGTAAGGACCGCTGGAAACCCGTCGACTTCGACGGCCTCATACTCTCGGCCCGCCGCCGAAACCAACCGAATGAAAATCCGCCTACTCCGCGGTAGACCCCCAGGTCAACAAGC # Right flank : TGGTGCTGGGCATCGAAAGTCTGATCAGCCAGATCATCCTTGTCGTAGCGAGCACGTTCATTCTCCGGCAGCGGTCGCGTAGGTGGCTTTTCAGGGGAGAGGTCTGAATAGATTTGCTAGGTGGAGTCGTTGCATCGAGTCCATCTAATCCACTGTTGTGTGGATTGTCATGATTTCTAAAGTGAGCTTCTGGCGCCACGTGAACGCATCCGCACGCCACTCACCTCGGGGCTCGCGGCGCACAATATCGTTGGGGTGTGCGCCGGGAGATGGATGCCTCTAGGTTGGTCGAACGTCGTGTTGTCGGGTTGCTTGCCGCTCGCCTGGTTGGGAGCGCTGGTGACGGATTCGGTACTTTGGCGTTGTGTTGGGGGAGGATCGGCGCGGGTCATGGACCGAGCGGGCTGTCAGTCGTACTGGCCTGCAAGGCGACGCCGGCCCTGTTGGTGCTGATGGGAGGGCTGTGGGGTGATCGCTTCAGTCGCCTGCGCGTCATGGCC # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCCGCGGGGATGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22185-25316 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAACUY010000055.1 Actinomadura fibrosa isolate LMG 29177, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================== ================== 22185 29 96.6 33 ............................G CACGCCCGAGGTGGTCGAACCATTTCCAGCGGG 22247 29 96.6 32 ............................G AACGACCGCTTGCGCGTGCCGGCGAACTCGCG 22308 29 96.6 33 ............................A GACGTCCTCCACCAAGCCCAAGGACGTCGACGC 22370 29 100.0 32 ............................. CTCACCGGATCGGCAACGAACCTGGCGTTGGA 22431 29 96.6 32 ..........................G.. AGCACCCGGGAGTAGTCCTTGGGGTAGGGGGA 22492 29 100.0 32 ............................. CAGTACGTCACCGTCAACGTGACGGACGCGGG 22553 29 100.0 32 ............................. AGCTCCGCGGCGAGCTGGACGACGCCCACGCC 22614 29 96.6 32 ............................T TCGTCTCCTCGGCGATCGCGGCGGGCTACTCC 22675 29 100.0 32 ............................. TGTCAGCGTTGCTGACCGGGACCTCCGACTTC 22736 29 96.6 32 ............................G GTGGCGCCGCTGTCGGACAGCGGCCACCACAA 22797 29 96.6 32 ............................G CCGTTTTGGCCGTCGTCCACGATCGCGATCCC 22858 29 96.6 32 ............................G GCGGGTGAGCACGTCACGATTCTCGCGCCTAC 22919 29 96.6 31 ............................G TCTACCGGTTGTCGGCGCCGGGTCGTACGGT 22979 29 100.0 32 ............................. AGGTACCAGGCGGTGGACCCGAACGTCCCCGA 23040 29 100.0 32 ............................. GACGTCTTCCCGGGGAGCTATGCGGCCTTGGA 23101 29 100.0 32 ............................. CGAGGTCCGTGAGCAGGACGGCGAACAGGAGA 23162 29 96.6 32 ............................G TCGAAGCAGACCGAGGGCTGAAGCGAAACGCA 23223 29 100.0 32 ............................. CGAGGTCCGTGAGCAGGACGGCGAACAGGAGA 23284 29 96.6 32 ............................G TCGAAGCAGACCGAGGGCTGAAGCGAAACGCA 23345 29 100.0 32 ............................. CGAGGTCCGTGAGCAGGACGGCGAACAGGAGA 23406 29 96.6 32 ............................G TCGAAGCAGACCGAGGGCTGAAGCGAAACGCA 23467 29 100.0 32 ............................. TCGCCGCCCTTGTAGCGGGCGTTGCGGCACGC 23528 29 96.6 33 ............................A GCAGTCGCCCGCGTTCTCCGACGTCGTCACCGG 23590 29 100.0 32 ............................. GCGACCGCGTCCGCGGCGAAGACCACGATCCC 23651 29 93.1 32 .C..........................T CCGGACTGCCCCGCATGCAAGGCACCACACCC 23712 29 93.1 32 ...............T............G AACACCAAGGCCGCGGGCGTGCTCCGCACGAT 23773 29 96.6 32 .........................C... CGGCTCGTCTCGCTGGCCCGCTACACGCTCAC 23834 29 93.1 32 ...............A............G TCCGCGAAGCTTCGCGCCTGCTCCGGGACGCG 23895 29 100.0 32 ............................. CGGGCGACGTACGCGGAGTGGGCCCAACTGGT 23956 29 96.6 32 ............................T CCGACTCTCAGCGTGTCCGGTGGTGCCGCGTG 24017 29 96.6 32 ............................G GCCACCATCGCGGGCTTCACCATCGCCCTGAC 24078 29 96.6 32 ....T........................ GGCAACCGCCGCAGCCCCGACCAGATCTGGGA 24139 29 96.6 32 ...C......................... AGGTCCTGGCGCAGTTCGAGGCCGCCGACTCC 24200 29 100.0 32 ............................. TGGTCGGAGTTCTTGATGACCAGGTCGGGGGT 24261 29 96.6 32 ............................T GCGAGCGTTACGGGAATCGTGTACATCCAATA 24322 29 96.6 32 ...................T......... TCCACGAGGGCGGGGCGGTTGGGGACGAGCTG 24383 29 100.0 32 ............................. TGCTTGAGCGTGGCTCGCGCGACCCACAGCAC 24444 29 96.6 33 .................A........... GCCTGGTCATCCTGGGCACCTCCTCTGGAGCAT 24506 29 100.0 32 ............................. GGCACCGCGACCTGCGGTCCGGTGTGCACGTA A [24531] 24568 29 100.0 32 ............................. CGGATTGGGCTCGTGCGCGGCCTGACCGGAGG 24629 29 100.0 32 ............................. CTGATCCGGGTGATCAACACGATCCGGGAGGA 24690 29 96.6 32 ............................T GGTGCCGAGCAGGGGATCACCGCCCTGGCCTT 24751 29 96.6 32 ............................G TCCCAGTCGCCGTCCACGACCAGGTCCATGCC 24812 29 96.6 32 ............................T CGACCCGGGCGGTGACCGGCCGGGCCTGCAAC 24873 29 96.6 32 ....................A........ AGCGGGTCGGACTGGCCGCGGTTGCAGCCGGC 24934 29 96.6 32 ............................G GGCTTCTACTCCGGTGGCGCGGTCGGGCAGGC 24995 29 96.6 32 ............................G TCCAGGGTGTTGTAGAAGGGGAAAACGCCGTT 25056 29 100.0 32 ............................. GAGGCCCGCACGGCGTGGAGGAGCTCGTCCTC 25117 29 93.1 32 .......................A....G GGCGCGCGCCGCCGCCCGGTCCGAGGCGCACC 25178 29 82.8 82 ....A.A...........A......C..G TGGACGATCCGCCATTTCGAAGTCATATTTTCAGTCGACCCCAGGCAAGCAATGAGAGCTCTATTGACGATATATTAGATGC 25289 28 75.9 0 ....A..T...A.A.A.-.........T. | ========== ====== ====== ====== ============================= ================================================================================== ================== 51 29 96.8 33 GTCGGCCCCGCGCCCGCGGGGATGGTTCC # Left flank : ACGCCAGGCCAGCACCAAGTACGCGGGCAGCACCAGCCGCGTCCAAGTGCTGGAAAGCAGGAGTTGCTTTGCCGATGTCATGGATGCCGCACACCCAGGCGAACATCTGTCGGCCCCGGCCATCGCCCGCAGAGTCCTCCAACGCTCGACAGACGGATGGCGCCAAGTACTGATCCCAGATGAGTTCGGCTACCGCAGCAGTGTCCAGCAGATGTTGCAACAGCAGGTTGGCCTGCCCGCCAGCCTTTTCCGCGCTCTTACCCCACAACACCCCGAGCGGGCCCTGAGCGCTCGTCCCTGAGTCCTCAGTGTTCACAGGCGATGAAGGTAGTCGGACACACTGACAATCGAGCCTCCTCCCAGGTGAGGCATGATGTTCGGGAAAAGAGACATGCATCAACCAACGTGTGCGCGGACCGACCACCTCCTGAATGCTCATGATCGCCAAGCAACCGAATGAAAACCCGCACCTCGGCTGATAGCGTCGCAGGTCAGCAAGT # Right flank : CAGCGCGCACGTCACATGACCGGGATGCTATATACCCACGGCTATGCGGTAGATGCCGCCGATCTGGGTGGTATTGGGCAACGTAAATTGGTCGTGGCCGCCCCTCGGACACAAACCCTCAGCACAAGTGGAGGCCGGGCCAACCCGCGCCTCCACTGTCTTTTTCTCGGGGCAGCACGTCACCACCAACCCGCTCCCGCGAAAAGATCGGCTTCGTCACGCGGAGAGCCGCGACCAGAGCCCGAGCAGAATCCTCCGCCTGACGGCTGGCTTCTTCGACGCGGCGCCCGGCGAGACCCTCTCAGCTTCGTAAGCAGAGCCAGCTATCAGGCGCTCCTCAAGCCCGACCTCAGGCTCTCCGCGAACGATCGTCAACCACGCCATGCAACCAGCCCATTCCGCAACCGCCCCCGCGGACGCGGTGCCGACAGGTCTCGGGCCAGGTCCGCGATCGCATGCGGGGAACCATCCCCGCGAGCGCGTGGCCGACCTGGTCGCGA # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.06, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCCGCGGGGATGGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 25989-25716 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAACUY010000055.1 Actinomadura fibrosa isolate LMG 29177, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25988 29 93.1 32 ........................A...A ATGGACATGGGGATGCGTGCCTATGCCGAACT 25927 29 100.0 32 ............................. GGCTTCTCGCCCGGCAACCGCTCGCACCGGAA 25866 29 96.6 32 ............................A CGGGCGATGTGCGCCCGCAGGATCGCGACCAG 25805 29 93.1 31 .......A.....T............... CGCATGCGATCGCGGACCTGGCCCGAGACCT T [25779] 25744 29 79.3 0 ......A.....T........GC...TG. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 92.4 32 GTCGGCCCCGCGCCCGCGGGGATGGTCCC # Left flank : GACTTATCTGTCCCACATTGTCATGATGTGTCCGAGGGGTGGTCGCGACCAATTTACGTTGCCCAATACCGCCCCGATCGGCGGCATCCACCGCATCACCATGGGTGCATGGCCGTCCCGGTGATGCGACGTGCGCGCTGAAACCATCACCTGTGCGCGAGGCCAACGCATCTCCAAAGAAGATATCGTCAATAAAGCTTTCCTTGCTCGCCTGGGGGTCGACTGAGAATATGACTTTGCAATGGCGGAGCGTCCACGAGCCGTCCCCGCAGGCGCGGGGCCTACGACAAGGGCCTCCGCAATCTTGGCCGCTCGGAGGAACCATCCCCGCGGGCGCGGGGCCGACCTCGTCATCAGCGGGGGAGACGGCCGCCATGGCGAACCATCCCCGCGGGCGCGGGGCCGACGTGCCGAGCCCAAAACGTCAGCGCCGCGAACGGAGAACCATCCCCGCGCGGGGATGGTCCGCCTGGAGCGTGGCGGTCGCGCACTGGTCGTTG # Right flank : GGAATGGGCTGGTTGCATGGCGTGGTTGACGATCGTTCGCGGAGAGCCTGAGGTCGGGCTTGAGGAGCGCCTGATAGCTGGCTCTGCTTACGAAGCTGAGAGGGTCTCGCCGGGCGCCGCGTCGAAGAAGCCAGCCGTCAGGCGGAGGATTCTGCTCGGGCTCTGGTCGCGGCTCTCCGCGTGACGAAGCCGATCTTTTCGCGGGAGCGGGTTGGTGGTGACGTGCTGCCCCGAGAAAAAGACAGTGGAGGCGCGGGTTGGCCCGGCCTCCACTTGTGCTGAGGGTTTGTGTCCGAGGGGCGGCCACGACCAATTTACGTTGCCCAATACCACCCAGATCGGCGGCATCTACCGCATAGCCGTGGGTATATAGCATCCCGGTCATGTGACGTGCGCGCTGAAACCATCCCGTGTGTGCGAGGTCGACGCATCTAATATATCGTCAATAGAGCTCTCATTGCTTGCCTGGGGTCGACTGAAAATATGACTTCGAAATGGCG # Questionable array : NO Score: 3.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //