Array 1 120113-110778 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAHL010000005.1 Moraxella osloensis strain 8444 NODE_5_length_171259_cov_44.796258, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 120112 28 100.0 32 ............................ ATTGGTGGATATAGTATCCAAAATAGCGGTCA 120052 28 100.0 32 ............................ AGCTTGCCGATTATCATTAAACCGTTAGACAT 119992 28 100.0 32 ............................ ATTTCCAAAATATGCTGGCGGCTGATGGCTCG 119932 28 100.0 32 ............................ TGATGTTGGTTGCAAAACCGACTTATCAAAAC 119872 28 100.0 32 ............................ AGTGGCAAGTATGCTCGTTTTTATCAAAAGGG 119812 28 100.0 32 ............................ GCCAACATCTTTTACATCTTCACCAACGCCCA 119752 28 100.0 32 ............................ GTGTAAATACTTACAGAGCCTTGAACAAGCCA 119692 28 100.0 32 ............................ GCGCACTTCGGTTTCAAGCTCTGCAATCCGTG 119632 28 100.0 32 ............................ TGTTAGTACAGTTGCTGGTGATGTCGGTGCAT 119572 28 100.0 32 ............................ ATTAAGGGACGTTTAGTTACCATTATGGGACA 119512 28 100.0 32 ............................ AAAAAGTTACGTTAGTTAATGCGCTAAACGTA 119452 28 100.0 32 ............................ AGTCGGTTTCGCTATGCACAAAACCAGTGACC 119392 28 100.0 32 ............................ ATGTTGCAGGTGCAAGAAAAAACAGGTCATAG 119332 28 100.0 32 ............................ ATTCGGGTGCAGACGTATCGACAGGGATAAGG 119272 28 100.0 32 ............................ TTTATCACCAATCAAGCGGTCGGGGCTTGCAC 119212 28 100.0 32 ............................ CTGCTGATACGTTGTTGTCATCAAAGGTATAG 119152 28 100.0 32 ............................ GCCAGCACCTGCACCATTTAGACGGTCAAATG 119092 28 100.0 32 ............................ TATCAGCCCTAAAAGCCTTAGTCACAAGCGAA 119032 28 100.0 32 ............................ CATATCAAGGATAAGTTTGACGCGGTTATCAC 118972 28 100.0 32 ............................ AGTTGACTAAGACTGCCAAAATACCGCTATCA 118912 28 100.0 32 ............................ GATGTGTGTATTTGCATATCGGTTTTTTATAG 118852 28 100.0 32 ............................ GAAACCTTTTCTAAGGAGCCAATCAAACACGG 118792 28 100.0 32 ............................ AACGCACGTGCCGGCTTGGACTTAATCATAGC 118732 28 100.0 32 ............................ AGTACCCCATTGCCCCTTTGACGCAACCGATG 118672 28 100.0 32 ............................ TGTGGTCGATTTTGGCGTTGGGTATTGATTTG 118612 28 100.0 32 ............................ TATTAGCACAACTCAACAGCACCTTGGCCATA 118552 28 100.0 32 ............................ GCCAGAATGGTTGAATGATTTGGCCACTACAA 118492 28 100.0 32 ............................ AACCTTGCGCAATCCAGAAGGCGATTAAATCA 118432 28 100.0 32 ............................ TACTCCGATATTAATTGAGTTTTTGACGTATA 118372 28 100.0 32 ............................ CCAGGGCTTCGGCTTGTTTGACTAGATAGGTT 118312 28 100.0 32 ............................ TATGCCAATAACCCGACCATATCGGCAAGTAA 118252 28 100.0 32 ............................ AAGGCGGCACGGTTGATAGTAAACTGCTTAGG 118192 28 100.0 32 ............................ TTATGATAGTCATCAATAAAAGAGCCAATAAA 118132 28 100.0 32 ............................ AGCAATTAAAGATATTGAAGCGCAGAGTAGTA 118072 28 100.0 33 ............................ AGTCGCCATAAAACTGCATGGCTTTGATACGAT 118011 28 100.0 32 ............................ ATTTATCAGAGCAAAAAATGGTTGGTTGCACG 117951 28 100.0 32 ............................ TTTGGGCGTTTGGGTTGGGAGGGTCATTTAAA 117891 28 100.0 32 ............................ ACCAAAATGTCATCTTGGTTCTTCTGCAAGAT 117831 28 100.0 32 ............................ AAACCCATATCAAAGACTTCAAGGCCCATTAC 117771 28 100.0 32 ............................ TGCAAGATGACAACTTGTAGAACACACCTTAG 117711 28 100.0 32 ............................ ATCAGCCTTTTCAGCGAACTGAACGCCAGCAA 117651 28 100.0 32 ............................ AAACAATGCACTATAGCCCAAGCAATCGACAA 117591 28 100.0 32 ............................ AAACCCATATCAAAGACTTCAAGGCCCATTAC 117531 28 100.0 32 ............................ TGCAAGATGACAACTTGTAGAACACACCTTAG 117471 28 100.0 32 ............................ ATCAGCCTTTTCAGCGAACTGAACGCCAGCAA 117411 28 100.0 32 ............................ AAACAATGCACTATAGCCCAAGCAATCGACAA 117351 28 100.0 32 ............................ AGCCGAATTTTTTACATAGCCAGCTTCACAAG 117291 28 100.0 32 ............................ CAGAAGATGAAAGTTCTTCTTGTGGTGAATGT 117231 28 100.0 32 ............................ CAAAGAGAACCGCATCTTTGAAGGTTTGAAAA 117171 28 100.0 32 ............................ AAACAATTGATTGAGAAACGCCAACAAGCACA 117111 28 100.0 32 ............................ ATCACACCTTTGGTAGTTTCTTCAAACAGTTT 117051 28 100.0 32 ............................ GCCACAGCTCACAGGCAAAGAGCAGCAAATTG 116991 28 100.0 32 ............................ AAATTGCAAGACACCAAGTTTATCGCCAATGC 116931 28 100.0 32 ............................ TAGGCGGTTTCGAGTTGTTGTTGTCGGACATA 116871 28 100.0 32 ............................ ACATTGTCCGCCTGAGCTGATCCGATTAGCTG 116811 28 100.0 32 ............................ TCGATAGCGTTATTGATGCCATCGGCTGGAGT 116751 28 100.0 32 ............................ ATTGGTGAGATGCCTATGTTTTTCACTTTGGT 116691 28 100.0 32 ............................ TTCATGAAAGCGTCAAAATATTGGGCTTCATC 116631 28 100.0 32 ............................ TATACCTACCCTTGCTGACAAAATCTACGACA 116571 28 100.0 32 ............................ GTCCTAAAAGATTAACCTACTACCCAAGCTAT 116511 28 100.0 32 ............................ TATGACAATAATTTCATCGCCTTTTTTGAAAA 116451 28 100.0 33 ............................ ATGCTAAAATTTTCGATTCGTCAATGTATTTTT 116390 28 100.0 32 ............................ CGCCGGTGTCTGTTCTGCAAGCCTTGGTCAAA 116330 28 100.0 32 ............................ AAGCCACTAACCAATACTGAAGTTGACAAAGC 116270 28 100.0 32 ............................ TTAGCGACCTGCAAGCAAGCCGCCTTTGTGGT 116210 28 100.0 32 ............................ AGAGCGAATAAATAACAAAATGTGGTAATGTG 116150 28 100.0 32 ............................ ATGTCGAAGAAGAAATCATGAGCGAAAGCGAT 116090 28 100.0 32 ............................ CTTTGTGATGCGCTTGAAATGTTGAAGCCCAT 116030 28 100.0 33 ............................ TGATGAAGATGGTTCTTGTGGTGAATGTTGCGA 115969 28 100.0 32 ............................ AGCAGGACAGGTAACGGGTTCATCTTTTTTTA 115909 28 100.0 32 ............................ AGCTTCACAGGTTTTATCCTCTGGCTTAGATA 115849 28 100.0 32 ............................ TAAGCCTGTCTTAAACCCAGACAGCAAGGCTA 115789 28 100.0 32 ............................ TTATGAAGATGGTTCTTGTGGCGAATGTTGCG 115729 28 100.0 32 ............................ TAACGCTCACCGTTAAAAATCCCCACGTTACA 115669 28 100.0 33 ............................ TGATGGGGTTAGCATTTCTTCCTCGGTTATTTT 115608 28 100.0 32 ............................ GCGAATGATTTGCCAACCACGCTTAAACACTT 115548 28 100.0 32 ............................ TGATATGACCTTATCAAGCATAGAGTCAAACA 115488 28 100.0 32 ............................ CACAGGGCGCTAAGTTTGCCTTGCCAATTCCT 115428 28 100.0 32 ............................ GTATTGATAAACTTTCGTCACCCAACCAAACG 115368 28 100.0 33 ............................ GTGGATATGAAAAGGGCAAACAGTTGGGTGATA 115307 28 100.0 32 ............................ TTGCAGTCCGACCCAATCGGACAGATTCTCAA 115247 28 100.0 32 ............................ TGCGATACGGTTAATACGCGCTTCTTCATAGG 115187 28 100.0 32 ............................ AACCCATTCGCTCGATGTCGATGATGTGCCAA 115127 28 100.0 32 ............................ AAATAGGCGAGTCATCAACAAGCAAGTCAAAA 115067 28 100.0 32 ............................ CGTCCATCTAAGCGCCATTTCGCCCACTGCGC 115007 28 100.0 32 ............................ TCGTAAAATCTTCCCAACATGTTTACCAATCC 114947 28 100.0 32 ............................ AGAAATAGCAAAAAATATCTTGGCTACTAAAA 114887 28 100.0 32 ............................ TGGGTAACATCTCGCTCGGCTCGTGTCGTAGC 114827 28 100.0 32 ............................ TATGTGCGACCACTGGGGCACCTGACAAGACT 114767 28 100.0 32 ............................ ACGCATGGATTCAAGAGAGCGTAAGTTTTTGG 114707 28 100.0 32 ............................ TGGTAAGGCTCAAACTCATCTAAAAACATATG 114647 28 100.0 31 ............................ AAAAAATCGATGCTGTCGAAACGCACCAAAA 114588 28 100.0 31 ............................ AAAATCGACGATAGCAAACACACGCTTGCGT 114529 28 100.0 32 ............................ AAGGCAAGGTGAGCCGAAGTGTACCATTGACC 114469 28 100.0 32 ............................ TGATTGAAAATATCCAGCTTGTAATCTAAGGG 114409 28 100.0 32 ............................ ATTGCACAGGGCGAAAGCGAATCAACCTTGGA 114349 28 100.0 32 ............................ AAGGGGTCGGACTTGCCTGTGCCTGTGGACAA 114289 28 100.0 32 ............................ ATTGCACAGGGCGAAAGCGAATCAACCTTGGA 114229 28 100.0 32 ............................ AAGGGGTCGGACTTGCCTGTGCCTGTGGACAA 114169 28 100.0 32 ............................ GTGACGCCTTTATCAAGTTCGCGCCATCGGAT 114109 28 100.0 32 ............................ ATAATGGGGCATATAGCGGAACCCGATACGCT 114049 28 100.0 32 ............................ ATCTTGGATAAATGACTTGGGCGCGGTATCCA 113989 28 100.0 33 ............................ TCATAAATGGCTTCAACAGTGGGGTCGGTGTTT 113928 28 100.0 32 ............................ ATCATAGGTGTATGTGGCTGGTGCATAAGTTA 113868 28 100.0 32 ............................ GTGGGGATTTGTAGCCAGTGATTCCCAATTTG 113808 28 100.0 32 ............................ AAAAGGTGACCGCAATGCGTTAATCACTAGTA 113748 28 100.0 32 ............................ ATTTTGACCAATTTGGTTTTATTGATTCTTTG 113688 28 100.0 32 ............................ TTAAAGTATTCTCCTTCTTCATCCACCAAATA 113628 28 100.0 32 ............................ TTTTCAGGCGATTTCTCACTGACTAAATAAGC 113568 28 100.0 32 ............................ AACGTCATGCTGTAGTAATCGCATAGTTGGCT 113508 28 100.0 32 ............................ TAAAAAAACCAGTGCGAATCGGTGAAGTGACT 113448 28 100.0 32 ............................ GCTTTGCCTGGTGCTACTACCGCAGGGGAATT 113388 28 100.0 32 ............................ GCAAGAGATTGAAGGCGATGCGCTGCTTGATA 113328 28 100.0 33 ............................ AAATAGAAATACAAAAATCCATGAAAGACCCAA 113267 28 100.0 32 ............................ TGTAAATTCAGCGTTTACAGGGGTTTTTTATT 113207 28 100.0 32 ............................ AATGACCGTATCGCCTGATGTGCCATCATCCA 113147 28 100.0 32 ............................ TGTCTTACTGGCTGTATATCGCCATTCTTGGC 113087 28 100.0 32 ............................ ATGTAGTGCGCTCTTGCTTTTGACCTGTGTTT 113027 28 100.0 32 ............................ AATTTGAATCACAACTGTACTTAGCAGGTAAC 112967 28 100.0 32 ............................ CGCTTGACTAGATGATGCCGCATTGCAATGTA 112907 28 100.0 33 ............................ CGAATGGATGGTTTCGTCTTATACAACCATAAG 112846 28 100.0 32 ............................ ACCTTCACGAGTCCCCACTTGTAAAGTGCGAC 112786 28 100.0 32 ............................ TGATGGTTCAGGCAGAACTTTAAATATTGGCA 112726 28 100.0 32 ............................ ATCGCGCTCGAGTACTTGGGCGCGTAACTTGC 112666 28 100.0 32 ............................ TTCAACGGGTGGTAATTCTTCAAGCTCTCGCA 112606 28 100.0 32 ............................ TAGTGTTTTGGTCAGCTGCTTGTCTAGCGTAT 112546 28 100.0 32 ............................ AACCTTTAGTTGATTGTATTTATCGGGGTATG 112486 28 100.0 32 ............................ TTTAGGCGAGCCGTCTATCTCGAGCGGCTAAA 112426 28 100.0 32 ............................ GTAATTAATTTTTGTTGGTATCTATCCCAAGC 112366 28 100.0 33 ............................ ATACAAGTAATCAATACCATAACCACTGATTAG 112305 28 96.4 32 .............C.............. AGTGGCGTATCGCTTGCACTCACTCAAAGACA 112245 28 92.9 32 A............C.............. TTTAAGTAAAGAAGAATTTATTGCGTTACGCC 112185 28 92.9 32 A............C.............. ATGATAAGACCCACTACGCCATCAATCTTGTT 112125 28 92.9 32 A............C.............. AACACCTTTTAGGCGCTCACGTCCTACATCAT 112065 28 92.9 32 A............C.............. AAAGATGAATTTATGAATATTAAAATCGCAAG 112005 28 92.9 32 A............C.............. TTTTGCGATTTTTGACGTAATAGGACTTTTAG 111945 28 92.9 32 A............C.............. AAGAATTTATTAATGGTCTTTCAAACTTGCAA 111885 28 92.9 32 A............C.............. TATTATCGAAAAATGGGCGAATGATTTTACTT 111825 28 92.9 32 A............C.............. AAGGTAGGTAAAATGGTAAAAAGTCAGCCTTT 111765 28 92.9 32 A............C.............. AGTTTTAAAACTTTAGTGTATCATTTGGTGTA 111705 28 92.9 32 A............C.............. CGAAAAAGTCCAACCGCTAGGACTAGCATTAG 111645 28 92.9 32 A............C.............. TTGGATTTACAACTTAACTGACACCCAGTTAT 111585 28 92.9 32 A............C.............. TTGAGCCAAAACCAGTGCCGATGCCAATGCCT 111525 28 92.9 32 A............C.............. CCTTATGCTTTGTGTTTTTCAAGCACTGGCGA 111465 28 92.9 32 A............C.............. TGACTTTGTGCAATGCCAACTTTCGCCTGTTG 111405 28 92.9 32 A............C.............. GTGCGATTGCTTGGCAGTTAGTGGATGCGGCA 111345 28 92.9 32 A............C.............. CTAACACCCACTCATATTCACTTGGAATTGGT 111285 28 92.9 32 A............C.............. AATAGCTGCACTTGTGGCAAGCGGTTAGTAAG 111225 28 92.9 32 A............C.............. GCCATACAGATTATCACCTAAGCACTTTTGTA 111165 28 89.3 32 A............C.A............ TTTGCAGTAGTTATGCAAGATTGATGACTAAA 111105 28 92.9 32 A............C.............. TAAACCCTTCCCCCCTTTGTAGTCCTATCTTT 111045 28 92.9 32 A............C.............. TGTTGTAATTTTTGCAACACCATCAATACACC 110985 28 92.9 32 A............C.............. TGAAAAAATGAAAACAAAAGCTGAAATAATCG 110925 28 89.3 32 A...........GC.............. ACTTCGCACCGCACACGAGCGAGCGAACAACA 110865 28 92.9 32 A............C.............. GGTTGACATTAAAAATTCAAATACGCTCCAGA 110805 28 78.6 0 A............C........G..TCT | ========== ====== ====== ====== ============================ ================================= ================== 156 28 98.7 32 CTTCACCGCCACATAGGCGGCTTAGAAA # Left flank : TTGATCGATTATGTGCATTTGACCAGTATCAAAGAAGTGTGCGATAAAGCAACAGGTCATGTCATTGTCAGACGCTATCGATATAAAGACTTTGACAAAAAGGTGTCGGAATTTGCCAAGTTTAAAGGCATTAGTGAAAAAGACGCATTGGCTCATTGTCTTGAGCATAAACGCCCTATCAAACGCTATCCTTTTATCAGCTTAAAAAGTGAAACCAACCAGTCTGATTACAGATTATCGATTTGGCAAGAAACCGCCAATGAAGCTAAAACAGGCAGTTTTAATACTTATGGCATCAATAATATGTCAAATGACGTGACCGTGCCTAATTGGTAAGTTATAGTTGAATTATAAAGTAAGGGTGAATAACCCTTATTTTTGACTCAATAAAAATAGGTATAAATTTCAATCAGTTATATCTAGGCAAAAAATGTAGGGTAAGAAGGGTATTTTTACTTGGTAAGCCTTGCTATAACTGCTTTTTTTGGGATAAAATTCCT # Right flank : TAATTAGTAAAACAGTGAAGTTTATTTATTTTTACTAAAGTGACCAAAAACAAGTGGGTGTAAAATTAAAAGTCTTAAAAAAATGCGTGGTCACCAAATGGTCACCTTTTGGTCACCATTCAATTTCTATAGTGAAAAAGGTGCCCAAAATCACAAAAGTGGTCAAAATTTTGACTCTCTAAAAACCACGTAAACACTTGATATCACTGCAATAAAGAAGCCCCAATCAATCGACTGGGGCTTTTGGAATATGGTAGGCATAATCTGACTCGAACAGACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTATATGCCTAAAAGGGTCTAACCATCTACTTGCGTAAGTAGGAGTGCCATTTTACCAAAAAATTTTGCTTTTGCAAGTGGTTTTAATTCTTCGCTTTAATTTTTATTGCGCCATCTTCAGCTAAGTTTTCGTTAAGGTTAGGTTGTTTTAATACACTCAGCCACTCGGATATACCTCAGTA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACCGCCACATAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTAACCGCCACATAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 165651-173485 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAHL010000004.1 Moraxella osloensis strain 8444 NODE_4_length_173726_cov_42.154998, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 165651 28 100.0 32 ............................ TTGCATTTGGTCTTGCTTGTTTAGAATCTTAT 165711 28 100.0 32 ............................ AAGAGCAAAACGCGGGTAATTCAAAATCTTTC 165771 28 100.0 32 ............................ TAACTCCGCGATTAACTTAAAAAATGGCTCGA 165831 28 100.0 33 ............................ ATAGACAGTACGAAAAAAATGTATATAACGTCC 165892 28 100.0 32 ............................ AGTCCGTCAGTATCGTGAACTGCCAAGGCGAT 165952 28 100.0 32 ............................ AACGGGTCAGTTGGATACCTATGAGAGTTAGT 166012 28 100.0 32 ............................ TTTCCCCCTTAGTAGTCCCCAGCTTTTTTTTG 166072 28 100.0 32 ............................ AGTCCGTCCGCAACGACACGCGCCAAGACGAT 166132 28 100.0 32 ............................ TTGTTGGTGGCGCATACATTGGTTTGAAAGTG 166192 28 100.0 32 ............................ TTGGCAGATGGAACCAATGTATATTACATCCC 166252 28 100.0 32 ............................ GTCAGGACGTTTCCAATTACCACGCTTTTCGA 166312 28 100.0 32 ............................ TGAGCGTTTAGACGTTCTAACCATACCGCCAA 166372 28 100.0 32 ............................ AGAAGTACACCCGTTTTGCGACGCTGTGAAAT 166432 28 100.0 32 ............................ CATGATTTTATAGTATTGCTCACTATGTCGGG 166492 28 100.0 32 ............................ TACCGCTTTAGGCGGTGACTTAATCAAGTCAG 166552 28 100.0 32 ............................ GATATCTACCGAGCCAGTAAGCAAAACCACTG 166612 28 100.0 32 ............................ CACACCGCCGGCTCGTACTCTTTGTTATAGTC 166672 28 100.0 32 ............................ TGATAGAAAACTGGCGGCGTTAATTGCTTCAT 166732 28 100.0 32 ............................ TGGTCCTTTGTAAGCTGCCATTTGCTGAATAG 166792 28 100.0 32 ............................ CGCGTGATTGCGGGCGGCACACTACAAACCGA 166852 28 100.0 32 ............................ AGACGCGGTTGAGTGCACTCAAGAAACAAAAG 166912 28 100.0 32 ............................ AGTGTCGCAAATGACCTACGAGGAGTGGGAAG 166972 28 100.0 32 ............................ AATGACATATCAAGCGGTAAGCCATCGCTATT 167032 28 100.0 32 ............................ AACAGTTACTCACGATAAAAAACTTTTTATCT 167092 28 100.0 32 ............................ TTCATGTCTTATCCAATCACCCAAAGTTTGTA 167152 28 100.0 32 ............................ TTGGCAGATGGAACCAATGTATATTACATCCC 167212 28 100.0 32 ............................ GTCAGGACGTTTCCAATTACCACGCTTTTCGA 167272 28 100.0 32 ............................ AAATGTCACTGAAGTGGTAAGCGATATTGATG 167332 28 100.0 32 ............................ TATCCAAAAAAATGTTATGACTATTACGACTC 167392 28 100.0 32 ............................ AACAACAAGTCAAACAATTTGGGCTAAACGCC 167452 28 100.0 32 ............................ ACGCGCACCACCCAAAGTGGTTGCCATCACGC 167512 28 100.0 32 ............................ TACTGATAGTTTCCATCGACCTCCATTAGGAG 167572 28 100.0 32 ............................ AACCCAAAACTGGCTACCACCGAGTAGCACAT 167632 28 100.0 32 ............................ AATGCGCAGAGGTTAAATATACCCGAACCGGT 167692 28 100.0 32 ............................ AAAAGAATTTTAACCCTAATAATACGGCTGAT 167752 28 100.0 32 ............................ TTTTGAAATGTCGTTGCCCATTGTTTTAAAAA 167812 28 100.0 32 ............................ TTGATTATTATGATGTTAATCATGATAAATCA 167872 28 100.0 32 ............................ CGTCGAGCTTGTAGCAAAAATCACAGGTCATA 167932 28 100.0 32 ............................ TAAGATTTTTCGTAAAGTAACTCCAAATCCGT 167992 28 100.0 32 ............................ AACTGGTACAGTGTGACGATACCCGCCACACT 168052 28 100.0 32 ............................ ATGCTCGAGCGTGAGAGTTGCGCATTTTCTGC 168112 28 100.0 32 ............................ CACGTGGGATTATACCCCAATTAGTAACACGG 168172 28 100.0 32 ............................ TATCACTTCTAAAGCCTTACAATACGTCTCAT 168232 28 100.0 32 ............................ AAGCTATAGCAAGACAATGAACTATAGCCCAA 168292 28 100.0 32 ............................ TAAACAAATGCAAGCCGTTTTTGAGAATTGTG 168352 28 100.0 32 ............................ ACGCAAAAAATGGGCAACTTACACCGCTCACG 168412 28 100.0 32 ............................ AGTCACAAAACGCCGGCAGCTCAAAAGGTTTA 168472 28 100.0 32 ............................ AAAAACAGTGACGATTTGCACATTGCCTTGGG 168532 28 100.0 32 ............................ GCTAAGAGTTGCCAAGCTTGAGGCATTACTGG 168592 28 100.0 32 ............................ TCTTTGATTTCGACAACCTTGCTGATTGAAAT 168652 28 100.0 32 ............................ ATAAACTCAGTAAACCTCTCGGTTAACTGCGC 168712 28 100.0 33 ............................ AGCAACCGCATCATAACCACTAAAAGCCCAACC 168773 28 100.0 32 ............................ ATCATTGATGATTAACTTTCATGATGAATTAA 168833 28 100.0 32 ............................ ATCAAGGCGTGTTATTCCCTTAACAACATCCA 168893 28 100.0 33 ............................ CCGTGTTACAAATGGGGGATACACCCCCCGAAA 168954 28 100.0 32 ............................ TTAAATGAAAGCTACAGCCCAGTAATATCAAG 169014 28 100.0 32 ............................ TTATTTGGCTAAACTAGGGTTTAAATAATTTT 169074 28 100.0 32 ............................ TTTGCGTTTAGTGGCCAAAGTATAATTAATAT 169134 28 100.0 32 ............................ ATATCGACGAAGAACCAAAAGACCAAACGATT 169194 28 100.0 32 ............................ CCTCACTAATGACAACGCCCACAGATTTAGAA 169254 28 100.0 32 ............................ AAGTTAAGAAAATAGGTAGCCAATTAAGAATA 169314 28 100.0 32 ............................ TGTTCGGTCAATGCCACCGCCTAGCGCAAATC 169374 28 100.0 32 ............................ TAATGTGTTTTATTGTTTCATTGTGTCATTAA 169434 28 100.0 32 ............................ CGCAAGCTCAGACTCAAACCCAGCGCGCAATT 169494 28 100.0 32 ............................ AAAAAAAAGTGGGTTAAACTGCGTTTGAATTT 169554 28 100.0 32 ............................ TAAATTCACTTGGTGGAATTGGATTGGGCTGT 169614 28 100.0 32 ............................ GAGGGGTCAGACTGCACAACTTGGTAGTCAAA 169674 28 100.0 32 ............................ TTTAGTGCGTCAAATATCGGTTTAAATTTATA 169734 28 100.0 32 ............................ AAAAAAACAAGGTCGAATTTTTAAATAAATTA 169794 28 100.0 32 ............................ CTCATCAGACAATTTTTTTAAGTTTGGCTTAG 169854 28 100.0 32 ............................ TATGGCGAAGTTGAACTTGCTTATCAAGTTGG 169914 28 100.0 32 ............................ TGATGAGGACGGCAAAGTTATTATTGATGAAA 169974 28 100.0 32 ............................ GCGAATGTCCTGACGGTTCATTGATTATCTAT 170034 28 100.0 32 ............................ GTCTGGATATGGCACGGCTTGATAATCACCCG 170094 28 100.0 32 ............................ TAACAAAGCATAAATATCATAACAGGGCTTTG 170154 28 100.0 32 ............................ TAAAGAAGGTACATATACGCCAATATCATCAA 170214 28 100.0 32 ............................ AAAATACTTATACGCCTTATCGCAAATAACCA 170274 28 100.0 32 ............................ CCACGCCTCATCAATTTGGCGTTTTTCGTCAT 170334 28 100.0 33 ............................ ATCATCATCAAACCAGACATTTCATTTTCCTAT 170395 28 100.0 32 ............................ GTTGTCAGACATACATCACCTATGAATAAAAT 170455 28 96.4 32 ...........T................ AGTCATGCAAGCGATTTTATTTGTTCTATCCT 170515 28 100.0 32 ............................ ACTGACGCCAAGGTCTGCACTTGTGGGCGTAA 170575 28 100.0 32 ............................ TGCCTTGTTCGGTATGTTGTCTATTCAATCCG 170635 28 100.0 32 ............................ CCGACTTTAACGCCGAGGTCTAGAACATTGCC 170695 28 100.0 32 ............................ ACGATTAAAAATAGTTGACCCTGATTTTGACT 170755 28 100.0 32 ............................ TGATTTATTAACTCGTATTTGGAAAAAAGCAA 170815 28 100.0 32 ............................ ATCATAAACAGCGTTTGCGCCTTCTTGTTTTT 170875 28 100.0 32 ............................ ACGGGTATTATCGCTGACAATATCCGCCAAAT 170935 28 100.0 32 ............................ ATCCTTACCACCATCAGCTCCTTTTGCGAAAC 170995 28 100.0 32 ............................ TCTCACGTTCAAGCTATGAGCAAACTTACTTT 171055 28 100.0 32 ............................ ACAAACCAATGCGGTCATCGCTGAAATCTTAG 171115 28 100.0 32 ............................ CGAAGGTACACCCAACACGCCTACAAGAAACT 171175 28 100.0 32 ............................ AAACGGCAAACCTAAACAGCGTGTATTCTGTG 171235 28 100.0 32 ............................ ACCACAGTAGCTAACATCTGCGCCAATAATCG 171295 28 100.0 32 ............................ CAGTGCCTTTGCCATTGCAGCAGGACTTGGCT 171355 28 100.0 32 ............................ ATAGAGAACTTTGCCGTCCTTACCGCGATGAC 171415 28 100.0 32 ............................ GACGGTTGTTACTTTTTCGCCCACCGCATCGA 171475 28 100.0 32 ............................ GCATCGACTTTAGTACCCACTTTTTCACCAGC 171535 28 100.0 32 ............................ AAGTCGCTATTGTCGCGGAACTGTTCGGCGAT 171595 28 100.0 32 ............................ AAGCATGGCTTAGTCAAGTCATCAGCGTAATA 171655 28 100.0 32 ............................ CACTTTACTTGATTGTTAGCAGGGTCTAGCAC 171715 28 100.0 32 ............................ AAATGACCAATTCGCAGCTTGAGCCGTTGGTG 171775 28 96.4 32 ..................C......... TATCGTATCAATGATTAATGGTCTTGTTGCTG 171835 28 100.0 32 ............................ AGCATCCTATAAATGCGAATTTACGAGTTAGC 171895 28 100.0 32 ............................ CCAAAGTTTAACCAGTGCCTTTTGTTGACCTT 171955 28 100.0 32 ............................ AATCTATAAAATCACAAACTTTTTTATTAAAT 172015 28 100.0 32 ............................ AAGCATGGCTTAGTCAAGTCATCAGCGTAATA 172075 28 100.0 32 ............................ CACATGGATTTATAGCCTAGATTCATGCTTGA 172135 28 100.0 32 ............................ ACCTACAAACGGCAAGGCAATGTTGTTTATTT 172195 28 100.0 32 ............................ ACACTTTGCCAACTGTGCAAAGTGACGGCTGT 172255 28 100.0 33 ............................ TATCGCCTTCGGTGTAACCGTCTTTTTTTGCCA 172316 28 100.0 32 ............................ AGCAGAAGCCGCAGAAGTGGCAAAGGCTCGCT 172376 28 100.0 32 ............................ AGCCGCATCGACTTTATCGCCCACAGTTGTTA 172436 28 100.0 32 ............................ TCAAAAACTTTTGAGTTATCTGCGCTGGGTGT 172496 28 100.0 32 ............................ AAGTCGCTATTGTCGCGGAACTGTTCGGCGAT 172556 28 100.0 32 ............................ AAGCATGGCTTAGTCAAGTCATCAGCGTAATA 172616 28 100.0 32 ............................ AAGCATGGCTTAGTCAAGTCATCAGCGTAATA 172676 28 100.0 32 ............................ CACATGGATTTATAGCCTAGATTCATGCTTGA 172736 28 100.0 32 ............................ ACCTACAAACGGCAAGGCAATGTTGTTTATTT 172796 28 100.0 32 ............................ AACTGCCGCCATCTTTGGCGTTGATATATAGA 172856 28 100.0 32 ............................ ACTTCGGTGGGTTTTTTATTTAAGGAGGCGTA 172916 28 100.0 32 ............................ GTGTACCGTCTTGATTATTTTGACGGCGAATA 172976 28 100.0 33 ............................ CTGTGCCATCGTTAACTGCCGCGCCTGTTTTAA 173037 28 100.0 32 ............................ TTAATGATGAGGTTGCTGAGATATTTGCTGAG 173097 28 100.0 32 ............................ CAAAGCGCCGATGTTTTAACTCGTTTTTTTGG 173157 28 100.0 33 ............................ GTTACCGATTTGGCGTTGGGCTTTGCTCACGTC 173218 28 100.0 32 ............................ ATGCTCAATCAAGCGACTGATACGGCTATCCC 173278 28 100.0 32 ............................ CAGCAAGAAACTTGGGATATCGTAAACCAAGC 173338 28 100.0 32 ............................ AACAAGCGCAATCGGTGCTTCGAGGGCATCTA 173398 28 100.0 32 ............................ CTATCTCTACAGTGGCAGATAAAATTTATGAC 173458 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 131 28 99.9 32 GTTCGCCATCGCATAGATGGTTTAGAAA # Left flank : TCGCTGGGCAAAGGTATTATATAAAAGCTTGGCGGAAGGCTGTGGCTTTAAATTTACCCGCGAGGAAGGCAAAAATGCCAATGATGATATCGCCGATATCGCCAATAGCTACCTTGACCACGGGAATTATATCGCTTATGGCTATGCGGCAGTTGCATTACATGGGTTAGGTATTAGCTTTGCTCTACCGATGCTACATGGTAAAACCCGCCGTGGTGGTTTGGTGTTTGATGTAGCAGATTTGGTCAAAGATGCGATGGTGATGCCACAAGCATTTATTTCGGCAAAACTGGGGCATAATCAAAAAGAGTTTCGGATGCAACTTATCGAGATTTGCCAAGACCAAGATGTGTTGGATTATATGTTTGGCTTCGTTGTAGACACTTGCCAAAAAATTAAATAAAATCAGCTGCTTATAAAAAGCACTTTAAAACGAAGTGTCTTGACTGAATTAAAACGTATATAATTGATATCTGGGGATTTTGTCAGAAAATTCTCCA # Right flank : CATGAGCTTGATTGATATTGTTCATGCACCCTACTAAATTTTTCTAGTATATATCTACTTTGCATTTTTTTCGTCAATATTTCTCATTTTTATACGAGATAGTCCTAATCTAAAGTTAAGGTAAGCAATTTATAGTAAATCCTAAATTAAAATGAACAATGAATAACACAGTCATTGAGTGACTCAAACTGACTCATAGACAGTTGCACATTTTGCTTCACTACCGCCCACTTATTCTCTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCCATCGCATAGATGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCGCCATCGCATAGATGGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //