Array 1 338584-335903 **** Predicted by CRISPRDetect 2.4 *** >NC_021838.1 Listeria monocytogenes, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 338583 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 338517 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 338451 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 338385 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 338319 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 338253 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 338187 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 338121 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 338055 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 337989 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 337923 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 337857 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 337791 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 337724 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 337658 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 337592 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 337526 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 337460 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 337394 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 337328 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 337262 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 337196 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 337130 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 337064 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 336998 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 336932 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 336866 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 336800 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 336734 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 336668 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 336602 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 336536 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 336470 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 336404 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 336338 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 336272 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 336206 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 336139 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 336073 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 336007 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 335941 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [335906,335909,335914] ========== ====== ====== ====== ==================================== =============================== ================== 41 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 2173964-2172635 **** Predicted by CRISPRDetect 2.4 *** >NC_021838.1 Listeria monocytogenes, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 2173963 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 2173897 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 2173832 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 2173768 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 2173702 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ATC [2173693] 2173634 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 2173569 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 2173504 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 2173438 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 2173374 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 2173309 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 2173244 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 2173179 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 2173116 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 2173053 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 2172987 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 2172924 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 2172859 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 2172793 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 2172728 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 2172664 29 93.1 0 .......................C....C | A [2172639] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : GTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //