Array 1 2465-3467 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAFHQQ010000029.1 Citrobacter freundii strain sc19444294-1 NODE_29_length_10354_cov_74.6476, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
      2465	    29	 100.0	    32	.............................	CAACCTCAATTCCTAATGGCTGTCTAAGGAAA	
      2526	    29	 100.0	    32	.............................	CAGGGTTTGCCCTTTTGCACCGCGCAGCGGTC	
      2587	    29	  96.6	    32	............A................	AGCAACGTTTCCGGATTATATGGCTGGAACGT	
      2648	    29	 100.0	    32	.............................	TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA	
      2709	    29	 100.0	    32	.............................	TGGTGTTGTCCACGGTCACCCGCTGGCTGGAA	
      2770	    29	  93.1	    32	............CA...............	AGGTATTTGACCTCATCCAGAAAGGCACAGAC	
      2831	    29	  93.1	    32	............CA...............	GCACCCTCACGGATACCTTTTGCACAGTGTTA	
      2892	    29	  89.7	    32	............CA..............C	CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG	
      2953	    29	 100.0	    32	.............................	TTACTTTTTGGCAGTTGGTAAAACACTTTTGC	
      3014	    29	  93.1	    32	............CA...............	CGAAAACGGCAACCTTCATAAAAACGTCTTTT	
      3075	    29	 100.0	    32	.............................	CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG	
      3136	    29	  93.1	    32	............CA...............	CAGCGTCTGAACGGACGAAACATCCCTGTTGA	
      3197	    28	  93.1	    32	.....-.......C...............	CGAGCGCTCTCCTGGTAAATCGGTAGCTCGGA	
      3257	    29	  93.1	    32	............CA...............	GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT	
      3318	    29	  96.6	    32	..............A..............	TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA	
      3379	    29	  89.7	    32	............CA...........A...	CACTACCAGATCCGAATGGACACCCGTAATGA	
      3440	    28	  82.8	     0	............CAC.......-.....A	|                               	
==========	======	======	======	=============================	================================	==================
        17	    29	  94.9	    32	GTATTCCCCCCGTGTGCGGGGGTTATCGG	                                	       

# Left flank :   GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA
# Right flank :  ACATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATATACAGTGTGCGCCGGGAGACCGGTTAGAGATCAAGGGGTGAAAGTCCCCGACCATTGAAGGACCAGCAATCCACAAGGTCCCCGAGTCATGCGTTGCATACCGCGAGGTATGGGGCGAAGCGTTGACAGGGGTGTTGACAGGCCAGCCATTGAGCCACGAAATGTATATTAA

# Questionable array : NO	 Score: 5.54
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTATTCCCCCCGTGTGCGGGGGTTATCGG
# Alternate repeat :   GTATTCCCCCCGCATGCGGGGGTTATCGG

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [2,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.10,-12.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [1-15] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.18,0.74   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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