Array 1 174248-174809 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHYP010000005.1 Bacillus pumilus strain 179-D 9B5 HS NODE_5_length_201822_cov_245.337480, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 174248 32 96.9 34 ...........T.................... GTAAAACTTATTGGAAAATATCATACGAGCTATT 174314 32 96.9 34 ...........T.................... AGGAACGTCTACATTAACCAATCCAGGACTTTTT 174380 32 96.9 35 ..................A............. CCCCACTCATAGGTCTTGCCTGTACTGATGGTTTC 174447 32 100.0 35 ................................ AAAAAAGTAAACGTACTTATAGGAACACCTTTATC 174514 32 96.9 35 .........................A...... TCACAAAAATCAGAATGGAAGGTCATTCTTGCGTT 174581 32 96.9 33 ...................T............ ATATCGGTATCCATACTTAGAAGTGTTTTGTTT 174646 32 100.0 34 ................................ TACTCACGCTTTGCCATGACTACATTTCCTTCGA 174712 32 93.8 34 ...................A...........G CTAAAGTTGATGTTGAAAGAAGCGATCAAGGTTT 174778 32 84.4 0 .............G........AAT..T.... | ========== ====== ====== ====== ================================ =================================== ================== 9 32 95.9 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ATGAAAGAAATAGCCGACCGGCTAGGCGAAACGAGACAAAACATCTCAAACATCCACAAAAAAGCGCTCAACAAACTAAAAGAAGAAACAGGGGGAGATGTCCGTGAACGAAGAAAAAATGACCAATGGAGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTCTACATCAAACTTATCGAAAAAATAGACCGGCTGATTTACCAAGAGGGACCTGGATTTTGGGAGTTTATTGTGGAATATATGACAAAGATGTAAGAGAAGCTGATGGTGCGAATGTGAGGTGAACATAAAATCCCCGGTGCATTCGCACCTGTTTATTCGACAAAATTGAGAAAAAATGTATATTTTATGAAGGAAAAAACAAAATTCTTTATTGAAAGTTGTGGATTTTGCCTATCATTTCCTGAAAAATGTTACAATTAGGGCAGAAATCGCA # Right flank : TGATTGTGTCTTAAACGGGTATGACATGCTCAGAGATCATGATTCTTACAACACCCTCTTTCAGATACAAAAGCCATCAAAATAGACTGTTCATATGTATAGTGAAAACATGACTCATTGCAGTCATGTTTTTTTCTTCTTCTTTTTCCTAAATAAACCTTAAAAAATGTCAAAATAAGTCGAAATGAAAAGTAGTCATTTAGATTCAAATTTTATCCATTCGTAATGAATAATGAAGGAGGAATTGGTTTGGGTGAAACGGAGCGAACCGGTAAAGTGGAGCAGCTGATCTTAGAGAATTATCAAAGATTAAACAGCATGATATCAGAAGAAGTGGACTTTGCTTCTAACCATGGCGGGCTGACAGGGGATTCTAGAGAAGTGATGTGGATGGAGTTTTTTCGGAAAATCATTCCTAAAAAATATTCATTAGCACAAGGTGTCATCATGATTGACTCAGATGGAAATCATTCTAACGAAGTCGATATTGCCGTATTTGA # Questionable array : NO Score: 8.47 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 182992-183220 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHYP010000005.1 Bacillus pumilus strain 179-D 9B5 HS NODE_5_length_201822_cov_245.337480, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 182992 32 100.0 34 ................................ TTCTTAAAAACAGAAAAAACACCAGCTGCTTTAT 183058 32 100.0 35 ................................ TGACCTGTTGTGACTTTTTCAATTCGGCTTCTATT 183125 32 96.9 32 ........................G....... TAGCCGATGGTTCAGCTTGATGTTTTTTTCAA 183189 32 78.1 0 A..........T......AT.A...G.A.... | ========== ====== ====== ====== ================================ =================================== ================== 4 32 93.8 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : CACTCTACTTGAGTGTGTGGATTGAAATAATGCCGTTGTTATGTTTTGGCGATCAGCAACCATGTCGCACTCTCCAGGAGTGATTTGAATTTTGAAAAACAATAGCAGCATCATACATCGTAATTGATATGAGTATCTAAATAAAGTCTATCGTGAGTAGGTACCTTGAAAGGAATATTGACAAATGCACTTCATATAAGTGTGAAAATCATAACTCTCGCATCTGATCCAGTAGTCATGTATTTATTGAATTCAAAGTTGTTGCTGGAATAAGTATGATGAACAAGTTTCAATAGATTTAAATAAATAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCATTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAGGAGTGAAAACAAAGTTCTATATAGAAACTTAAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGAAATCGCA # Right flank : TTCTTATCAGAAGGTAGCTTGAAAGATATATTGACAATTGCGCTTGATATAGGTGTGAAAAACATAACTCTGTCTCAGCCATTTTATTAATGAATTCAAAGCTGTTGATGAAACAGCGAAATAAGTATGATTATCATCAGTAATAGTTTTTTTAAAATAGGATTAAGAAAGATTCGGTGCGAATGTGAGGTGAACATAAAATCCTTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAGGGGTGAAAACTTAATTTCTATATAGAAACTTAAGGGTTTTGACGATCATTTCCTAAAAAATGATATAATTAGGGCGAAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATCCCTTGACTAGCGGGGCATCATTAAATTGATCTTGTCGCACTCTACATGAGTGCGTGGATTGAAATATCTACCGGAATCGTCTGCACGCCAAACATCGTCGTCGCACTCTACATGAGTGCGT # Questionable array : NO Score: 8.55 # Score Detail : 1:0, 2:3, 3:3, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 183566-183862 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHYP010000005.1 Bacillus pumilus strain 179-D 9B5 HS NODE_5_length_201822_cov_245.337480, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 183566 32 100.0 34 ................................ CCCTTGACTAGCGGGGCATCATTAAATTGATCTT 183632 32 100.0 34 ................................ ATCTACCGGAATCGTCTGCACGCCAAACATCGTC 183698 32 100.0 34 ................................ GCTAATTCAATATGAGTCGAACGTGCGTTCTTTT 183764 32 100.0 35 ................................ TTCTTGTAGTTGGCTGCTGCGGTCCTGTCGATGAC 183831 32 96.9 0 ...........T.................... | ========== ====== ====== ====== ================================ =================================== ================== 5 32 99.4 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : CTACATGAGTGCGTGGATTGAAATTGACCTGTTGTGACTTTTTCAATTCGGCTTCTATTGTCGCACTCTACATGAGTGCGTGGGTTGAAATTAGCCGATGGTTCAGCTTGATGTTTTTTTCAAATCGCACTCTATATGAGTATGAGGAGTAAAATTCTTATCAGAAGGTAGCTTGAAAGATATATTGACAATTGCGCTTGATATAGGTGTGAAAAACATAACTCTGTCTCAGCCATTTTATTAATGAATTCAAAGCTGTTGATGAAACAGCGAAATAAGTATGATTATCATCAGTAATAGTTTTTTTAAAATAGGATTAAGAAAGATTCGGTGCGAATGTGAGGTGAACATAAAATCCTTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAGGGGTGAAAACTTAATTTCTATATAGAAACTTAAGGGTTTTGACGATCATTTCCTAAAAAATGATATAATTAGGGCGAAAATCGCA # Right flank : TGTCTTGGATATCGAGATAGCGCAGTAATTCGTCGTCACACTCAACATAAGTGCATAGTCCACAGTTTCTGCGAATTTAAATTCAAAATAATGTACTTCCCCCTAAATCCAAGCCCTACACAACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGCAGTTTTTCTTCACTGAAAATCCAGCCAGTATAGGAATTTTTGATTTGGTGGTCCATGTCGATATGGCAGATTGCGACAAAAGGATAGTGACCTTTGCTGCGGTAGCGCAAATCAATGAACCGTACCTCATAATGATCCTTGAATTTATCCACTTCCCACCGATAGACAGGGGAGAAGGAGAGAAAGGCTGAAATGTTTTCATCTTGCTTAGCAATTTTCATAATTTCAGTATCAGGGACCGGCACCCGGTTAAAGGTGTCTAAAATGACAACCTCTCCATTCATACTGCGCCCAACATGGAAAGAGGATTTACATTTCACGGCAATGCGCC # Questionable array : NO Score: 9.03 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //