Array 1 100835-102022 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSAR01000049.1 Escherichia coli strain A14 NODE_6_length_207446_cov_81.8712, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 100835 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 100896 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 100957 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 101018 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 101079 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 101140 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 101201 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 101262 29 100.0 32 ............................. AGTTACGTCGCCATCGATATTAACGGAACACC 101323 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 101384 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 101445 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 101506 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 101567 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 101628 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 101689 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 101750 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 101811 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 101872 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 101933 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 101994 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 127722-128725 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSAR01000049.1 Escherichia coli strain A14 NODE_6_length_207446_cov_81.8712, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 127722 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 127783 29 100.0 32 ............................. AATTTATTCGGTTTATTCCGTCGGCGCGCGAC 127844 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 127905 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 127966 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 128027 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 128088 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 128149 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 128210 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 128271 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 128332 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 128393 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 128453 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 128514 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 128575 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 128636 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 128697 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTGATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //