Array 1 50257-46723 **** Predicted by CRISPRDetect 2.4 *** >NZ_SORF01000010.1 Alicyclobacillus sacchari strain DSM 17974 Ga0215652_110, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 50256 36 94.4 30 .GA................................. GCTGTCGATCCCGACATGCTTGATCCTGAA 50190 36 100.0 30 .................................... CTGGTTTTGAGGAAGCACCATCTATTGCGT 50124 36 100.0 30 .................................... CTGTGTAGTGTCCAACCACGCGCGAGAATG 50058 36 100.0 30 .................................... ATGACCTTCCGAACTGTATCGCCCAAATCC 49992 36 100.0 30 .................................... CATCACATGCAAAATACACACCTAAAAATT 49926 36 100.0 30 .................................... AGCACAAACGAATACAGACACAAGACAGCA 49860 36 100.0 30 .................................... AACGAACTAGATGTTAATACACTTTGCAGA 49794 36 100.0 30 .................................... CTTGCAGCTAATGCCGAAGCTAAAAACCTG 49728 36 100.0 30 .................................... CGCGTAATCCTGCGCGTGAAGGGCGAAAGG 49662 36 100.0 30 .................................... GACAATAGCCTGACCCTTAGCATTGTAGAT 49596 36 100.0 30 .................................... CTGCAAAGTCGTATAAACCGTGCCGTCGAT 49530 36 100.0 30 .................................... GTTGTTAAGTGACTCCAGCGAGAGGTGGTT 49464 36 100.0 30 .................................... TATAGAGCCGCGTCATGCAGACGTTCGTTG 49398 36 100.0 30 .................................... CAGGACTATGTTGCGCGCAAGCAGGACAAG 49332 36 100.0 30 .................................... TTCAAACGTTGCCGTTTCTACGTCGTCAAG 49266 36 100.0 30 .................................... GGCGACATGACGAGATCGCCGTACTCCATC 49200 36 100.0 30 .................................... TGGTGCGATTCTCGTTGTACCTTCGTCTTA 49134 36 100.0 30 .................................... CTCGACGCTCTGACGGAGCTCGTGCAGAAG 49068 36 100.0 30 .................................... GAAAAGACAATGGGATATCGACCCGGCGAT 49002 36 100.0 30 .................................... ATTGCCCGTTCATTCCTGTTCGAATAACCT 48936 36 100.0 30 .................................... GAGTTTTGGCATATGTGGCCGGAATGTTCA 48870 36 100.0 30 .................................... CCGCCAGCGAGAACATGTTGTGTTTTTGCA 48804 36 100.0 30 .................................... TTGCTCGATTCGCATATAACGTTCGACGAT 48738 36 100.0 30 .................................... TTCACAAACAACACCTGCAAGCGTTCTTGC 48672 36 100.0 30 .................................... GCACAATACTACCTATATCAACGTCCTCTA 48606 36 100.0 30 .................................... AAAAACGAAAGGCGCCACCAAAAAACTCAA 48540 36 100.0 30 .................................... TTTCAACACGGGAAGCGTAGTGGCGCTGAT 48474 36 100.0 30 .................................... ACAAATCATATCGATTAGCAAGTTCACGCA 48408 36 100.0 30 .................................... ATTCATGATCGACTGTGGGAGTGCCAATTT 48342 36 100.0 30 .................................... CGTCCCAACGGCCGCCGCTATTGCACCCGC 48276 36 100.0 30 .................................... ACCTGCACATCTTTTTTCGCGTCCATGTCG 48210 36 100.0 30 .................................... AACCATATGCAGATCATCACACTGAATCAG 48144 36 100.0 30 .................................... TGAGTTTATCAAATTGAATCGTGTGTTGCG 48078 36 100.0 30 .................................... CCGGTAGATGTGCGTGTGTGCCCACATGAA 48012 36 100.0 30 .................................... TTCGCGGATGATTCGTACATGCTCATCAAG 47946 36 100.0 30 .................................... ACGGTGTTGAATACATATCAAATGAAAGAG 47880 36 100.0 30 .................................... TGGAATCCACTCATTGTGCCCTCCACGGAT 47814 36 100.0 30 .................................... GCAACCAGCGTACGAGGTGCAAGACGGAGG 47748 36 100.0 30 .................................... CATCGAGAGTATCGCGGCGCACGAGGTATG 47682 36 100.0 30 .................................... CGTGAGTGACGTGAATGGCTACAACTGGTC 47616 36 100.0 30 .................................... CCGGAAGACACGCACGATGTTGTTTCCAGG 47550 36 100.0 30 .................................... ACATCCACGCCGATCTGCGCGTTGTTCAGA 47484 36 100.0 30 .................................... GAGCGCGAGTTGCGTGCCAGGAAAAGCCGC 47418 36 100.0 30 .................................... GAACGCGCGCATGTGGGATGAGCAACAGCT 47352 36 100.0 30 .................................... TGTGGGTGTGGTAGGGTATGCGTTTAATAC 47286 36 100.0 30 .................................... TGCTAGTTCTTTTTTCAGATGCAGAAATCC 47220 36 100.0 30 .................................... CGATAAAAACGGTGTATGTGGTTCCTGAAA 47154 36 100.0 30 .................................... CAAGAGGAGATCTCGTGGACGTCGGATCAA 47088 36 100.0 30 .................................... ACGTCGGGTTCGTTCTTTCCGGTTTCATAG 47022 36 100.0 30 .................................... GTCTAGTTCCTCGTCGATAAAACCAGCATC 46956 36 100.0 30 .................................... CGTTGCTTGATGCCAGTGTCTGCGTGGTGG 46890 36 100.0 30 .................................... CCACTCATGCTTGCAGAAAGCCGAACGTAT 46824 36 100.0 30 .................................... TATGTCCTGTTTGCTTCATGATGGCACGTT 46758 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 54 36 99.9 30 GTCATAGTTCCCTCGTAAGCCTCGATGTGGTATGAT # Left flank : GTAACACGAGCACTTAGACAGGTATATTTAAACAAGAACCTCACGTAAAACTATTGATTTTAATACGATGCTATTTCCAGTTCAATCTAATCCAAGCTCCTTTAGGAGTTGTTCATGACTAACCGTCTTGCCCTCTTGATGCTGCTGAATTGCATCTTTTGCAAGCGCGTCAAAGGGATTGCGTACCTTGTGCACTTGAAAGCCGTCCCTATCAATACGCGCACACAATGTGTCTCCGGGTTGAATATGCAGCTGGTCACACAGTTCCTTTGGCAAAGCAATGTATCCGCGGTCATCCATCGTAAGCACGTATTGTTTCTTTGGCATGCGTTTCACCTCATGTGGGCCTTGCCTATATCATATGATGAATACGCGAAAGTCGTATCTTTCGTATGATGCAAGTCCTATGGTTGGCCATCTAGTTCATAGACTTCATTCGAAGCACCTACTCAAGCGTGCAGGTAGGAGCCTTTCTTAACTCCCACATGGTATAAGATGGC # Right flank : ACACGAGCGTCCAATCCCTTGTGAGATAAGGGATTGGACGCTCGTGTATTTTTCAAAAAAGGAATTTCCATTCCATTTTTCATCGTTCATGGTCCACTTTTCAAAAAAGTAGTAATTGCTCACTTTGCATTCTCCGCTCGTTTGGCACATAGTTGCCGACAAGGATTTTCATTCTCATGAACTGCTTTTCCGTGACCAATAGTGTTCGAACTGAACCCTTCTCGGGTACATGAGCTTGAAGGCGCCGCTCGTGCTTTTCGGCCATCTCATAACTTCCGCAGATACGACAATAACAGGAGTACTGCATCATATAGTACCCATCATGGAGCAAGAACTGTCGAAACTGGGTTGCAACCTTTCGTTCAGCTTTTGTGGTCACTGGCAAATCAAACAACACCATTAGCCGCATAGTCCTACTCATAAACCCCCATCTGTACCTCCGTTAACCTTGGCAATTGCAAAGCACTTGGGTCTTCCGTCGATATCGCATTCGAAAGGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATAGTTCCCTCGTAAGCCTCGATGTGGTATGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: R [matched GTCATAGTTCCCTCACAAGCCTCGATGTGGTATGAT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.30,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //