Array 1 28152-29275 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMNR01000018.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CVM20752 SEEH0752_31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 28152 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 28213 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 28274 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 28335 29 100.0 31 ............................. TTTGATACGTAGTATTCATTACGCCTCCTAG 28395 29 100.0 33 ............................. GCGAGGTCAATAAAAAAATGGTGTGGCTTTACC 28457 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 28518 29 100.0 31 ............................. AAAAACAGAAGAACGGCAAGCGGCACCTCAA 28578 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 28639 29 100.0 31 ............................. AACAGGAACAGGAAAAAAAGATTTGTCCGGT 28699 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 28760 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 28821 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 28882 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 28943 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 29004 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 29065 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 29126 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 29187 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 29248 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 45531-47195 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMNR01000018.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CVM20752 SEEH0752_31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 45531 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 45592 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 45653 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 45714 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 45781 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 45842 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 45903 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 45964 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 46025 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 46086 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 46147 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA A [46169] 46209 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 46270 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 46331 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 46392 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 46453 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 46514 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 46575 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 46636 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 46739 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 46800 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 46861 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 46922 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 46983 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 47044 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 47105 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 47166 29 96.6 0 A............................ | A [47192] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //