Array 1 156259-154457 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRHD01000003.1 Phocaeicola vulgatus strain AM25-23 AM25-23.Scaf3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 156258 33 100.0 32 ................................. TAGAGTCCCATAATGAAGATAAACCTCGAGCA 156193 33 97.0 33 ................................G TTGCGAATACAAGAAGCATGTGAATTCCCTCTA 156127 33 97.0 33 ................................A TATCGCCAAGGAGACGACGGTATTTTTCCTGGT 156061 33 100.0 33 ................................. CATAACGATACACAATTAATAAGGTAAACCATT 155995 33 97.0 33 ................................A GTTGCACGAATTGAGAGGGCGGAGAGATCAGAA 155929 33 97.0 32 ................................A GGAAGGGAATAAGGTTATCACGACCGTATTGT 155864 33 97.0 32 ................................A GAATAATCCCGGACGTAATGTTTCCGGTTCTC 155799 33 100.0 32 ................................. GAGTAACATTAGGGACAGAAGTAAGCGCAGAT 155734 33 97.0 34 ................................A GAGCAGGAACAGCCTGCATACCAAGCTGGTCAAA 155667 33 100.0 31 ................................. TTGCGGCGTTCGGTGTACAGCAAGAAGAATT 155603 33 100.0 33 ................................. TGATTCTGAAGCTCAACAGATATTGAATAAATA 155537 33 100.0 32 ................................. AAACAGAAACAGAAGGATGTCAATTCTTATGA 155472 33 100.0 31 ................................. ACCATAGAGTGTGAGTTGTGCGTTTATGGAC 155408 33 100.0 32 ................................. TATGAATTGCGTAATGCTGTGGACTATGGTAC 155343 33 97.0 34 ................................A CCGACCTTAGCGGTGAATAATTTCTTCGAGCTTA 155276 33 100.0 32 ................................. CAACACATTATTGCAGAGGCATCGGAGGCTCC 155211 33 97.0 33 ................................G ACCAGGCCCTACGCGGGCGGCGGGTGTATATCG 155145 33 100.0 32 ................................. CTTATCACACTCCCGTAATCTTGTATCGTTAA 155080 33 100.0 33 ................................. ACGATCGAGTCTCCAAATGAACAAAACTTCTTC 155014 33 97.0 34 ................................A TACCTATAATATTGATGTTACATCATCTATCTCC 154947 33 97.0 31 ................................C TTCTTGGGAAGCAGCGCGAGCAGCACGTCCT 154883 33 97.0 33 ................................G GAAAACAACTAAATCAACATCTAATTCTCCATT 154817 33 100.0 32 ................................. TTACTCTCTGTAATCTTTATTATTGACCTAGA 154752 33 97.0 33 ................................G ATTATGCACCCTCGTCAAACGGGGCAAGGGATT 154686 33 97.0 31 ................................A TATTCTGAACACATTGCAAATGTACAAAAAG 154622 33 100.0 32 ................................. GGGAAGCTTGCGCCGGATACATTATGGACGTT 154557 33 97.0 33 ................................A ATGACGAGGTGAATACGTGTATAGACAACCATA 154491 33 90.9 0 ....................A.........G.A | TA [154468] ========== ====== ====== ====== ================================= ================================== ================== 28 33 98.2 32 GTCACACCCTGCGTGGGTGTGTGGATTGAAACT # Left flank : ATATTGACGATTATCCGGTATTTCTTATAAAATGATTTTTAATTATGTACATTCTTGTGACTTACGATGTGGATACTACAAGCAAAGAGGGGGCTCGCCGTTTACGATGTGTGGCCAAGGCTTGTCTGGATTATGGACAGAGGGTGCAGAACTCAGTCTTTGAGTGTGTAGTGACGGAAGCGCAATATTCTCTTCTAAAAGGGAGAGTTAGGGATATTATTGATATGTCTCTTGATAGTGTTCGTTTTTATATTCTTAGTAAAAATGAGAATAAGAGGGTGGAAGTAATAGGTGTTGAAACGGCGTATAAACTTGAGGAGGCTCTTATAATATAATGCGAATGTGGTGTGTTACAAAAAAAGTAGTATCTTCGCATGTGTTAATAATCAGTAGATTAAATTATTTGTAGGGTATTTCTTTGTTATGAAGTTGAATAATAATGATGATTCGCATAACAGTGGATTAAATTTGCTGATTTATAATATGTTATTAGATATAGA # Right flank : TTGTTCACTCGTTGGTCAAGTTTATGGAAGAATTGTAAGCATTCGGCCTCTTGTGTATTTCTCTTCAAGCTGTTATAAAATCAAAAGCCAAACGAAGTACGTTAGGCTTTTGACTTTGTTATGACTGGAAAAAACACGCACAATCCCGGATGCTTATCTTTTGTCTGTCTTCTTTTGTGGTTTCACCTAGGTGACAATACATTGGCATCTAAGTGGAGAGGCGTAGTCACCCAAGTGATACGCTTGCTTCACCTTGGTGAAACTATAAATTCAACTAAGCGTTCCAGAGTAAATATATTATATTTTTTACTATACTATTCCTTGTTGTTTATTTGTTATATTGTTGATTATTAATGTGTTATTGTCTGTTTGTGTCGATTGTTTTTCTTGTCTTTATAAGATATATTAAAACATAAACTAACATGGAAATTGGTATAATTGACCTTTGTAAACAAATAGAAGATCCTAGTATGAACCGCAAGAAAGTCCATAAAATGGAA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTGCGTGGGTGTGTGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //