Array 1 5723-5160 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUKP01000027.1 Aerococcus urinae strain AU3 mira_denovo_c31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 5722 32 100.0 34 ................................ AAGTGGACTAACCGCCATCTTTCTTTAGGGCCGT 5656 32 100.0 34 ................................ AGCTCCAATTTGTCGCCATGGACTAAATTGGCCG 5590 32 100.0 36 ................................ TTGTAATCTACCCAGTAGGGATAATCCACATAAACG 5522 32 100.0 34 ................................ TATAAACTTATTTGCTCCGTCAACGCTCATGTTC 5456 32 100.0 35 ................................ CCTCATAATAGTAGGGCTCTAATTCTTCGCGTCCT 5389 32 100.0 33 ................................ CCTCCTACTTAAACTTCTGATCATCCATATATC 5324 32 100.0 35 ................................ ATTGCATTATGGATCAACAAAACGAGCCCATCATG 5257 32 100.0 34 ................................ TAAGAATTGTTGAAACCATGAGTGAAATTCGCTT 5191 32 81.2 0 .......A..T.A...A...AC.......... | ========== ====== ====== ====== ================================ ==================================== ================== 9 32 97.9 34 GTCGCAGGCTACGCGCCTGCGTGGATTGAAAT # Left flank : AGCTATTGGCAAGGTATATCCGTGGAGACATTGACTACTATCCGGCATTTATTAGTTAAAGGTGATTTAAGATGATGGTGTTAATTACTTATGATGTGAATACCGAAAGTAAGGCTGGCCAGAAACGCTTACGTAAGGTGGCTAAGGTCTGTGTTGATTATGGTCAACGCGTTCAAAATTCCGTTTTTGAATGTAGCTTAGATCCTGGGCAATTGGCACTCGTTAAATCGAAATTAGATGGTATCATAGATAGTGAAGTCGACTCGATTCGTTTCTATAATCTGGGTAAGAATTGGGATCATCGAGTACAAACCTTAGGACGGGACGATACCTATCACCCTGAAAAGGATGTCTTACTCTTATAACGAACCCCAAGCACACAGAATTGTATCGGTAGCTTCGTTTGTATTTTGGACTCAAAAATACAATATAAGTGATTATTTTGCTCTTTTTATAACACTTATATTATGAAAATATAGTGAAAACTTGTAAAAAGAGCT # Right flank : TGTAATTGCTGATAGTATCAACATTAGTAACGAGGGTTCAGACTTTTTGTCTGTATGGATTGAATTATCAGTTAACGAAAAAGCGATACGTTTTTCTTGTCGCAATTTATACACTTATGTAGGTAGAAATTAATATGCGGCTAAGTATTACAAATATGGTCCAAAGTTGTAGGCTTTCTTTCAGCAAAGATTGACTATTTATACCAAGCAATCAGCCCTTGCCAGCTCCTCCATCAGCGAGCTCAACAAGGGCTTTTTCTATTACATCGACTCATAAAAGCACTAAAAAAATTAACCCAATCCCAAAAATAAATCACAGCCCCACTAAAACCGATCATTCTTGATCCTTTTTCCTAAGTTGACAGTAGTCCTTGGACAGGCTAAACTATCAGTAAATCAAAACATTATTAAGGAGATTACATCATGACTTTAGTATTCATTTCTTGGCAAGGCTGGCGTAGAGTAAAGTGAGATAACTAAGAACGGTTAGACTCGCTTTA # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGGCTACGCGCCTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCAAGCTACACGCTTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 103563-103229 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUKP01000047.1 Aerococcus urinae strain AU3 mira_denovo_c5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 103562 29 100.0 32 ............................. ATGAATCTTGTAATGGGTTTGTGCTTATCACA 103501 29 100.0 32 ............................. ATCAGAAGGCAGCAGCACGTATAACGCGGTCG 103440 29 96.6 32 ............................T TTATTAGTTGTCTAAATATACCTTCCAACACA 103379 29 100.0 32 ............................. TGTCGTCCACCTTTAAGACTAGAGTAGCGTCA 103318 29 93.1 32 ...................T........T ACAATTTTGCTCATTTTCTCTCCACCTACACA 103257 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.3 32 GGATCACCCCCGCGTCTGCGGGAAAAAGA # Left flank : TCCTTTTCAATGGCAATCCGTGGCTTTTGATTAATGGTGAAGATTTCAACCGCCTGATAATTTTCAAGTCGAAGCAAGTCAGCCACTTCCTTATCGACCCCCTTGTTGGAATCCCCTAGGTTAATCTTTATGCCTTGGTCAATAATTGCGTCAATGGAATCTAGTACTTCTTGGGATAATTGGTTTTGCGTTCTCGACCCAGATATGAAAACACTCCGAGTAGATTCAGCCATAAGCTACTACCTCCTAAAGTTTACAATGATACCTACTTGCTTTAAATCCTCCTATCACAGGAAAGGATGATAAAGTTATTTTACTTTTATATTATAGCATGTCCACCCCAAGGCTTGGATAAATCGAGCTGATGATTTCAAAAGAAATATTGATCAAAGCTAATAAAAAAGAGACTTCTTTAAAGCCTCTATTAAATCAAATATTATTAATTTCCAAATAAATGCGGGAAAAAGCCTTTTTCGTTAAAAGCTAATTCGCCTTGCTGA # Right flank : CTAAAAGATCCCTATCAAATCAAGCTTTGTCATTCCTAACCTACCCAATTCCATTTACTTTTATTTTATCATAACAAAAAGACAAGGGCCTTGGCTAGCTTTTATAATGCTGCAAGCGTTTGGTCTGTACTCGTCCTCGGTGCAAGAAATAACAAGGCCGGCCCTTATGTTCACTCAAAGAGCCCAGCTGTTCCTGACAGTGCGGACATAATAAGGCATTGTCACGCCGGCCAAAATCATACTCTGACTCAATAATCCGGTGAATTTGTAATTTGATCAGATTTCCGCGGCCAACCTTCCAGTAAACACAGAGATCGTGTTTACACTGCATACAAGTCACTAAGAGTGGGTGGGCGTTTTTAATCTTACCTGGACTAGGATTTTTATAAGGCATCATTCCCCTCACTCCCTTCTTACTTCAACTATATTCTCTCTGAATTAATCAAACTGGGTCTGCCAGTTCTCACTTTGGTAAGCTTGAAAGCACATAGCAATTTGCT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATCACCCCCGCGTCTGCGGGAAAAAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //