Array 1 450119-453329 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJNLC010000001.1 Serratia marcescens isolate 0, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 450119 28 100.0 32 ............................ ACGATGCCGTCGGTGTTCGCCGAAACGACGCT 450179 28 100.0 32 ............................ TGTGCGCAGATCCCTAACTGGATTTATGACGG 450239 28 100.0 32 ............................ GGCGGCCGTCAGCTGCCCGTCGCTGCTTGCGC 450299 28 100.0 32 ............................ GTCCCCCTGCCAGGCACTCATGAGTCGACAGC 450359 28 100.0 32 ............................ AAAATCAGCCCAGATTGTTGCATATCAGGCAC 450419 28 100.0 32 ............................ TGCCAGCGTCACGGCGGGCTTCGACCTGTGCG 450479 28 100.0 32 ............................ AACGAGGGTAAATTCGTCGCCAAAATGAAGCA 450539 28 100.0 32 ............................ TTTCACTGCGCCGCCCTTCACGCCCCGGATGG 450599 28 100.0 32 ............................ TATGGCTATCTCAACGATCCAAACTTCTTGCC 450659 28 100.0 32 ............................ AGAAAGCCGGAGAGCTGGCCGACGATCAGGAC 450719 28 100.0 32 ............................ ACTCTATGCGGCAAACCTCACCGACCCGCATG 450779 28 100.0 32 ............................ TTTGCTCCAGGCAGCTCCAGGTGCATGCGTCA 450839 28 100.0 32 ............................ ACAGATGCGTTATATGGGAACCCGTTCGCGGT 450899 28 100.0 32 ............................ TGATTCACAGCGGGCAAAATGCTGTCGGGTGC 450959 28 100.0 32 ............................ GCGAACAAATAACCTACGTTTCCAGGATTGAT 451019 28 100.0 32 ............................ AGTTATCGATTGCCGAGCGCGCCGCCTTTGGT 451079 28 100.0 32 ............................ CCACTGAGCAAAGCGTGGGTCATTGACGTAAT 451139 28 100.0 32 ............................ TTCACAATCTTTCCTTTCTCGTCGCGGTGATA 451199 28 100.0 32 ............................ TGCCGTATCGATGTCGGTCAGCACCACCCGCC 451259 28 100.0 32 ............................ TGTCCGAGGGTATCGATTGCACCCGAGAGGGA 451319 28 100.0 32 ............................ TTACTGGCCTTCTCCAGTCTTTGAGCCTTTTC 451379 28 100.0 32 ............................ AGCGCGTCGCGGACGTGATGACCAAAGGTTTC 451439 28 100.0 33 ............................ ATGCTCATTTTCGCGGGCAAACGGCGCAAATCG 451500 28 100.0 32 ............................ GATCAGCGGTAGGGATGAAATCGCCCGTTCCG 451560 28 100.0 32 ............................ AGTAAGTGGCTTTGGTAGGTGGTGCGATTAAC 451620 28 100.0 32 ............................ GACGTCGGCGCGGATTTCGGCATGGAGGCGCC 451680 28 100.0 32 ............................ ATCAGGGGCATGCAACATGGCAGAGGATAAAC 451740 28 100.0 32 ............................ ATAGTTACCCCTTGCCGAGTTAGAAAATGACC 451800 28 92.9 31 .......................GA... TGTTTTTTTTCTCAAACCCCTGAGCGGCTTT 451859 28 100.0 32 ............................ TGGAACGCAGTAGTGCGGGGGTCAAATACGAT 451919 28 100.0 32 ............................ GGACTTCAGCCTGTGCTAAGAGCGTGACGAGC 451979 28 100.0 32 ............................ TCCTGAGGTGTTTGACCGCGTCTTCGGATTTG 452039 28 100.0 32 ............................ TACGCCACCGCCTGCAGCGGCTCCTGCCGATA 452099 28 100.0 32 ............................ TGTATCGAACATCGTCAATGTGACGGTAAATA 452159 28 100.0 32 ............................ GAAACTTCGCCATTCCATCCGGCGCCGTCGGT 452219 28 100.0 32 ............................ AATGATAATTTCTGCCGTGCCGGCATCCTCTG 452279 28 100.0 32 ............................ AGGGAATCGGTTGATATCGCGCTGGTACGCCA 452339 28 100.0 32 ............................ AGCGACCGGGAACCCGTTCGCGATCGAAACCC 452399 28 100.0 32 ............................ ATAGGGATCGTGGCGCGCGTCACCAGCTGATA 452459 28 100.0 32 ............................ TTGGGGTGACGGCTACGCCGGGACGCGCTGAC 452519 28 100.0 32 ............................ GTGCAGACAGCACTGGCACGATCACGTTAACC 452579 28 100.0 32 ............................ ATCATGGAAAGCCTTTATTCTAAAAAGAAATA 452639 28 100.0 32 ............................ TCGGCCTGTTCCCACGTCAGCAACCATGTGAA 452699 28 100.0 32 ............................ TAAGCAGCAAAATAAACCTCAACAGTCGAATG 452759 28 100.0 32 ............................ GATGGATACCATTGCCAATCAGGTGGCCAGCA 452819 28 100.0 32 ............................ TGGCGAACGTGGACTATTACGGCGACGCCGCT 452879 28 100.0 32 ............................ ACAAAACCTATTTCAGCCGGACGCTGCGCGAA 452939 28 100.0 32 ............................ ACAAAACCTATTTCAGCCGGACGCTGCGCGAA 452999 28 100.0 32 ............................ ATCGGCCGAGCGGGCGTGAAAACGGTAGGAAC 453059 28 100.0 32 ............................ GATAAGGATAAGGCTCGACGCCGTGCAGCCGC 453119 28 100.0 32 ............................ ATTACTGAACACCCACCAGCGGAGCAGTCAAA 453179 28 100.0 32 ............................ TTCGCTTCCAGCTCTGCCAGTAGTTCGAGAAC 453239 28 100.0 32 ............................ ATGGGAATGATGCCAAAATTTGCCAGTCCGGC 453299 28 96.4 0 ....................A....... | A,A,G [453319,453322,453325] ========== ====== ====== ====== ============================ ================================= ================== 54 28 99.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCCTGTTTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGCATTGTCGCTGGCCGGATACGGAAAGCGCGTTCCAGGTCTACCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAGTCGCTTTTAACGACCGGCAATAGATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGCTGGCAATTCAGGTCATCAGTGGTGTCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCTAAAATGCAAAGATGTCACCTTACCCCGTTCTTGGTTGCCGAACCCTTTTTTGAGTGATACTTTTAATTTATTGATTTTAAATCATATTTTTAATCGCTTTAAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AAAGTAATATGTATTTGATACATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGAATATTGACTCGGTTGCAACGGATTTCCCTGGAAAAACGTGGTAGAACGGTGGTGTCGCCTGCATTGACATTCATCGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTTTCCCCCTCTGAATTAAAAACAATACTGCACTCGAAACGAGCAAACTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGACGAAGGAAAGCAGTCTCTTTACTGGAACATCCCTATTGCCAACACTACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAGTTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCTGCTAACGAAGTGGAAGTCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 461811-462917 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJNLC010000001.1 Serratia marcescens isolate 0, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 461811 28 100.0 32 ............................ ATACAGTCGGAGATCAACCCGGCGGCGAACGG 461871 28 100.0 32 ............................ ATAACTGACGCTTAGCGGGTCAGTCTTCCACC 461931 28 100.0 32 ............................ TCAGTGTTGCCGGTGCCGCTTGCTGCCGCCAG 461991 28 100.0 32 ............................ TGATGGCTCAAGCAATGAGCATAAAGGTTGGC 462051 28 100.0 32 ............................ ATGATCGGCCCGCTGCCCAAGCGCATGCGCGC 462111 28 100.0 32 ............................ ATAGCGCAGTCCTTCACGCGATTAGCGTATGC 462171 28 100.0 32 ............................ GTATGCACTGTGGACTCCAGGTCATCGAGGCT 462231 28 100.0 32 ............................ AGAAAGGCATTCCGCCCTGGAAGATTCACCAC 462291 28 100.0 32 ............................ ATTCGGACGCGCTGCTGAGCGCCCAGGCGAGA 462351 28 100.0 32 ............................ AATAGGTTGGCTCGTAAAAGTGAATCGTGTCC 462411 28 100.0 32 ............................ CGGGTGCGTGGGCGCCCATCATTAGCTAAAAC 462471 28 100.0 32 ............................ TGGCACCGATTGGCAGGATATTACCGGCACGT 462531 28 100.0 32 ............................ ACGAGCATGGATAGTCGGGTGCGCGTGTTCGT 462591 28 96.4 32 ..........................G. GCCCCGCCAGCGCCAGCAGTGCCGGATGACTA 462651 28 100.0 32 ............................ TGGCTAATGACCCAACTTACAGCACGGCAAGC 462711 28 100.0 32 ............................ AGGGAAATCCAGGCCGATGAGGAAACGCGCAC 462771 28 100.0 32 ............................ ACGGAGGTGGCCGGCAGCTTGATGGAGAAGAT 462831 28 100.0 32 ............................ TTCGGCGGCCGGCCGCGAGCGTCTAGCCATCA 462891 27 82.1 0 .........T...C.A....-..T.... | ========== ====== ====== ====== ============================ ================================ ================== 19 28 98.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGCTGGGGGGATTCGACTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCTCATCCAGGCTGTGCCTGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGTATACGCCGCCGAGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTTATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCCGCTTGTTCCTGAAACAGGGTCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCTCCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACCGAGGGATTTGACTGTTGTTCTTTAATAATCAGTTTGTTAGAGGCTATTTTGCTCA # Right flank : ATAGAAGGGATAAAACTTTACCGACACCTGTTAACCAGGAAGCAAATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGCTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAGCGTCAATTCCCCTTTGCCGCGCAGCGCCTTGGCGCCTTTGCCGGCCTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGAGAGTGGGGAAAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTACCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //