Array 1 248485-246535 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044077.1 Pasteurella multocida strain FDAARGOS_644 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 248484 28 100.0 33 ............................ ATATAAAATTTCGTTAGGTTTGAAAACGTTTAA 248423 28 100.0 32 ............................ ATTTCAAGTTAAAGTTGAACGCATGAATGCGG 248363 28 100.0 32 ............................ ATCTAGCATCCAGTTTTTCTCACCGCCCCCGT 248303 28 100.0 32 ............................ TCGTCAATCTTGGCGCCATCTCAACGGAGCAA 248243 28 100.0 32 ............................ ATCAAACCCCGTACATACAAGTGTGAACAGTA 248183 28 100.0 32 ............................ GTTGTACGAGCAGAAAATCTTGGCGGGGGGAC 248123 28 100.0 32 ............................ TACAGTTAAGAATGGCGCGATTGATTTAAAAA 248063 28 100.0 32 ............................ TTTTTGCTCTAATAGCATTTCTCCATGTGTTG 248003 28 100.0 32 ............................ ATTGCCCACTCGCGCGGAAAAACAAGAATCAT 247943 28 100.0 32 ............................ TTTGTATGGGAAAAAATCTTCTTGCTGACATT 247883 28 100.0 32 ............................ GTCCTCATTTCTTGCGGGCGGGCATTTTTTTA 247823 28 100.0 32 ............................ TGAGGGTACTGATTTTGATGAATTAATTATTG 247763 28 100.0 32 ............................ TTATTTCACAACCGGTCAACAAACAACTGCAT 247703 28 100.0 32 ............................ ATCAGCAAAGCGACTAAATCGACGTGTTTAAT 247643 28 100.0 32 ............................ GCGTTGTGCAACGCGTAAAAGAGATGGTCTAA 247583 28 100.0 32 ............................ TACATTCTCCCAATTCACTGGATCTGACGGTA 247523 28 100.0 32 ............................ CATTCTGGCAAGCACGATTAGCACTTGAAAGC 247463 28 100.0 32 ............................ ATAAAGTTTCCCGCGCTCAAAAATCATATTAT 247403 28 100.0 32 ............................ TTTTACACCCACGTTTAAATCTAACTCTAATG 247343 28 100.0 32 ............................ TATCCTATTTCTTGGTTTGAGCAGAGAATACT 247283 28 100.0 32 ............................ GAATTGTAACCGCTTAATACGCGCATTAATTT 247223 28 100.0 32 ............................ GTTTACCGCGGAGAGAAGAATTTGGGTGACGG 247163 28 100.0 32 ............................ TCATCTCTCACCTCATTTTTAGTATTGATAGT 247103 28 100.0 32 ............................ GTTTGAACCACTGTTCCCGCTTTAATTGTTAA 247043 28 100.0 32 ............................ GATTAAAGTCGGTCATCACAGCGAAAAACGCC 246983 28 100.0 32 ............................ AAAGACATCTGTTATTGACATTGTTCAGTCAA 246923 28 100.0 32 ............................ AATTTTTTGTTGCGTTAGAAATTGAGCGTCAA 246863 28 100.0 33 ............................ TTTTGGTGAAAACTTAAATCATCACAAAACTGG 246802 28 100.0 32 ............................ TTGTAACTGATGTCACTGTGAAAAGTGGTGAT 246742 28 100.0 32 ............................ TTTTTAGCGTTTTTTTGAAGGGTTAGTGAGCG 246682 28 100.0 32 ............................ TTTTTCTTATAAGGAATCGGCACTATAGGTAA 246622 28 100.0 32 ............................ ATAAAACCATTTTGTAAACGTTCGATATGCAT 246562 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 33 28 100.0 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGGATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCCCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACAAAAAATATTGGTAAACGTCGCAAATCCAATACCCCCCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGTTCCATACTTGATGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : ATTTAGCTTATCAGGTGCAACCGGCTCAGTTCATTGCCATGTAAGCAGTTTCAATTGACTATTGGTATATTACCTAAACAGTTGGATATGGGGATAAGTCTATTAGCTTATATCGTGTTTAACGATAAAAGTGCTGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCCGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTGGCACCATAGAGGGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCACTGGCATTCACAATCTGCTGTGCTAACTCAGATAACGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTGTCGGCACGCTGTTTCTCTTGAGGATTTGACCAAGGTAAATGAATTTGGATACCTTGTACGGTCAGTTTTTCTGCTAATATCCGCCATTGTCTGTCCGGTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1517290-1516899 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044077.1 Pasteurella multocida strain FDAARGOS_644 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 1517289 36 100.0 34 .................................... CTTTGAACGATCAGAATAATTGTGCCATCGATAG 1517219 36 100.0 34 .................................... CTCAATTTTTGTGCTATGCGAGATATTAGTAATA 1517149 36 100.0 36 .................................... CTGCGTCTAACACTTCTTGTTGTGCGATTTCCACGT 1517077 36 100.0 36 .................................... CAACGGTACAACTCAGCGTTGAAGAAGGCTCGCACC 1517005 36 100.0 35 .................................... TTAATCAATTTAGATACAATTTTTTCTTCCTTTCT 1516934 36 77.8 0 ...........T.A........C...A.A...T.TT | ========== ====== ====== ====== ==================================== ==================================== ================== 6 36 96.3 35 GTCGAAAGACACTGCCCTGTTCTAAAGGGATTGAGA # Left flank : CAACAAACATTTTCGCCAAACGCACGGGGGTTTCTTCTAAACTATCATCGCGTAAATCTAACCCAATCAGCTTCATCACTTCACGCATATGTTGTTCAATCCCCGCTCGACGCGTATCTCTGTCTTGTTCTGGGGTAATCATTGGGGTTTCAATCCCCTTACTTAATAATGCATTGCGGACTTTTTCTGCTTCTGGTGAAATCTTGTTCATGTAAAACTCCCGATAAATAATCCGCACATTCTAGCAAACTCTCGCCAAAGTACAAATGAGAATAATTGGTAGAGAGGATGAAAAGTTTTGAGTTAAAACACGTTTTATAAAAAATAGACATAGTATAAAAAATAAACTTGAGGTAAAATAACCAAATTCTTTGGCTGACAGACTAGGTTTAAGTTGATTGTTTTTTGTTCAAATCAAGGGGTAGCTTTCCACATCAATGAAGAAATTGGGAAGCCTACAGATAACATTCTGAATACAAAAGAAAAATCCACCTATTACA # Right flank : TATGTAGCGTGGGCATACTTGTCCAGCACATAACCCCTACGCTTTCCCATTCGAAAGTACGATCATTTTTCAAAAAGTTTTACAGCTTTATCTCTGCTTATTTCTTATCAGTATAGGCTCAATAAAATGAGATCATCCTGCGTTTTTGGTATAAAATATTGCCCGTTAAACTCAACTAAGGATTCAATTATGTTGCCTCTTGAACAAGCACTGACTCAAATGCTCGCTATGTTGCCAACACCTGATTGTGCGCAAGCCGAACAACTCCCCCTTCAACACGCGGTGAATCGCATTTGTGCTGAGGATATCATTTCCCCGCTTAATGTGCCCTCCTTTGATAACTCGGCGATGGACGGCTATGCGGTGCGGCTGGCAGATTTAGCACAAAATTTAACTCTCACCGTAGCAGGAAAATCCTTTGCGGGCGCACCTTTTGACGGAGAATGGCAAGCACAAAGCACGGTCAGAATTATGACAGGGGCAATGTTGCCAGCCGGTGC # Questionable array : NO Score: 3.07 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACACTGCCCTGTTCTAAAGGGATTGAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 3 1980108-1978038 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044077.1 Pasteurella multocida strain FDAARGOS_644 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1980107 28 100.0 32 ............................ GTCCATTTTTCCTCCATAAAAAAGCCCTCGAT 1980047 28 100.0 32 ............................ ACAATAAAAAACCCAGAGTTAACTGGGTTTGA 1979987 28 100.0 32 ............................ TTACTCCATCTGTCGCCAAACTTTTTGGAATA 1979927 28 100.0 32 ............................ GTCAGATAAAAACATAAAACGAGTATTGGCAA 1979867 28 100.0 33 ............................ TTGAGGCATAAAAATGGCTTATAGAAAAAAAAC 1979806 28 100.0 32 ............................ TGAAAGCCTCTCATTCTTCTCAAATGAGTTAG 1979746 28 100.0 32 ............................ GACTGTCACGCACTTTTAGCCGCGTTTGCTAA 1979686 28 100.0 32 ............................ AAGTCCACCAACCACCCATGCTGAATTTGCTG 1979626 28 100.0 32 ............................ AGAAATCAACGAATTTTACTAATCGCGAAACT 1979566 28 100.0 32 ............................ TTATTCTAAAAATTGGCGTATTTCTGGTGAGT 1979506 28 100.0 32 ............................ ATCTACATTCTCAAACACTGGATGGTCAGTAT 1979446 28 100.0 32 ............................ AAATCTATTTTGGGCTTTTTCAAACGCGCATA 1979386 28 100.0 32 ............................ GTCAGATAAAAACATAAAACGAGTATTGGCAA 1979326 28 100.0 32 ............................ GTGCTTTATTTTAGTTATGGAATGCTTTATGA 1979266 28 100.0 32 ............................ TATTCTAAAGAAAAATATAAGTCTATTAATTT 1979206 28 100.0 32 ............................ TCTACGCTTAAAACATAATCAGACATACTAAA 1979146 28 100.0 32 ............................ GATGAACGGCATTGTTCGCACGCTGACTTTGT 1979086 28 100.0 32 ............................ TTCTTCACCACCACTATCCACCGCCATTGCTA 1979026 28 100.0 32 ............................ TTACGAAAAGAAATATCAGAAGTATTTAAAGG 1978966 28 100.0 32 ............................ AGCGGGTTAATGATTCAAACGTACAGATGGGA 1978906 28 100.0 33 ............................ CGTAGTTGCAGGAGCTCATCGTCGGGAAATCAT 1978845 28 100.0 32 ............................ TGTTGTGGCGATTTCTCTATTTACTTCAGGTT 1978785 28 100.0 32 ............................ TTTCTTACTTCTCTTTTTTATTAAAATCATCA 1978725 28 100.0 32 ............................ ACCATGGGAACGCTACATTTACCCAACAGAAC 1978665 28 100.0 32 ............................ TCTAAGTAAGCACCTTCCCAAATCCAGCGATA 1978605 28 100.0 32 ............................ TAAGCGTAAACAAATGCGTTGATAAAGCCCAT 1978545 28 100.0 32 ............................ ATTCGGCAACGTGATCCGCGCTTGAAGGTTTA 1978485 28 100.0 32 ............................ GCTAAGAATGTTTTAGTTTCTGTGTCGTCGCC 1978425 28 100.0 32 ............................ TTCAAGGGTTGCATCGCACAGCAGAAAGTTTA 1978365 28 100.0 32 ............................ GACTACAACGCCGAACATATCGCCAAGAGGTT 1978305 28 100.0 32 ............................ GCGAATCACTCCACCCTCAAACGTGTTACCTT 1978245 28 100.0 33 ............................ CAATGCTCCTAGAGTTGATGTTAAAACTAAAAT 1978184 28 100.0 32 ............................ TTTATATAATGCTAAGTAGATTTTAGTGCCTA 1978124 28 100.0 32 ............................ ATATCTGCAAAGTTCGTCACAAAGACTGGAGT 1978064 27 89.3 0 ........-...............A.C. | ========== ====== ====== ====== ============================ ================================= ================== 35 28 99.7 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACAGCAACAATTATTGCGATCTGGCTTATCAGACTATGCTTTAATTAGCGAAGTGAGTAAAACACCGTCGCCTACCGAGCATCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGTCGTACTGAAAAGCGTCTTAAAAGTCAGGGAAGATGGGATGAGTCCATCCGCGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCCAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAAAAGAATGCCGCAATCTTGTGTTGGTATCTTTAATGCTTATGGATTAAGTCACAGCGCAACCGTGCCTCATTTTTAATCTCATTGTTAACCCTTTTTTCTTACTTGAAAAATTTTCAAATAAGATCAAAGGGTTATTAGTGTTCCCTAAAAAAGGGTTTTCTTCTCAGATGTTCTTTAACAAATTGAAATATCCAAAGATATAACAAAATTCATTTA # Right flank : CTCATAATCGGAAGAGAGCGAGTTTGAATCGTTAATTATCAACTAGATAGTGTAAACCCTCGCCGGTTTTCAAGACCGGTGTATCCAATGCTGTTAAGCAACCTCAGTTAAAGAACAGAAAAGGCCCATTATGCTTATCAGATAACGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGTGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGTGGAGGTGGCACCCCCTTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //