Array 1 326722-325762 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYJW01000009.1 Streptococcus agalactiae strain GNUCH_SAga_30 9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 326721 36 100.0 30 .................................... TTTTAAAACTTTTGAGATTTCATCTTTTTT 326655 36 100.0 30 .................................... ATAAATCATAGTACCTTTATATCTTATATG 326589 36 100.0 30 .................................... ATAGGTCAATAATCAATAATCACAAAAAAT 326523 36 100.0 30 .................................... ATCGTATCCGTAATATTCTTCATAAGAGTT 326457 36 100.0 30 .................................... AACATTAGCCTTTTCTAACTCTTCAGCTGT 326391 36 100.0 30 .................................... TATGTCTTCTAACAGTTGCTTCTTGTGCTT 326325 36 100.0 30 .................................... CCGTCAAACAAGAGCGACAGCGAAACAAGC 326259 36 100.0 30 .................................... TTAACAGTTTCAAGTCTGTCTTGTTACTTA 326193 36 100.0 30 .................................... ACTCTAAATGATAGTTATGAGTTAAATGTT 326127 36 100.0 30 .................................... CAAATTACAGTTTCGACTGATTATGGAAAT 326061 36 100.0 30 .................................... ATATGTTCCACTCTATGAATTTAGGCTCAT 325995 36 100.0 30 .................................... ATATGTTCCACTCTATGAATTTAGGCTCAT 325929 36 100.0 30 .................................... TTTTTACCAATGCTTCCATATCGCTTATAT 325863 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 325797 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //