Array 1 54357-55910 **** Predicted by CRISPRDetect 2.4 *** >NZ_REHD01000002.1 Lactobacillus sp. ESL0245 Ga0226849_102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 54357 29 96.6 32 ............................C TGGTTTACACCCAAAAAGGTGTTGAGAAGACA 54418 29 100.0 32 ............................. GTTTACTTATCCATGTAGAACAATTAAGTCAG 54479 29 100.0 32 ............................. ATACAATTTTGTCAACAGTCTTTTAAAACTTT 54540 29 100.0 32 ............................. ATATCATAGAGTAAATAAAGAAAGTAAACCTA 54601 29 100.0 32 ............................. AACTAAATCCATGAAAAATGGACATCATAAAA 54662 29 100.0 32 ............................. TTGACGTCTATGTAGACGAAGATAGATACGGA 54723 29 100.0 32 ............................. GAAACTTGAACTCTTTTTGCCTTTAACTTGTG 54784 29 100.0 32 ............................. GACTGATGAGCAAAGATTAATTAACAGCACGG 54845 29 100.0 32 ............................. AATGGTATAAATCTTTAGTCATCATGTATTTA 54906 29 100.0 32 ............................. ATTATTATGTATAGTATTACCTTATATATTTT 54967 29 96.6 32 ............................C CTTGTACCAGAGAATAGTGGTCATGCCATTTG 55028 29 96.6 32 ............................C TGCTATCAAATTATAAGGGTTCTACTATAGTT 55089 29 100.0 32 ............................. AGTCATTTTCAACACCAGTTAAAACAGTAATT 55150 29 100.0 32 ............................. TACAAGTGGGAGTTTGAAATTATTAAATGAAA 55211 29 96.6 32 ............................C CAAAATTATGAAGATGTGGGATCCATTTTTAG 55272 29 100.0 32 ............................. TTAGACAATCCGTTTTGCAATTGCTAGAACGG 55333 29 100.0 32 ............................. CCTTTGGCGTTTGAGGTTTTTTAGCCTTTTTC 55394 29 100.0 32 ............................. ATACAATAGATTGTATACAGTATACAATAATT 55455 29 100.0 32 ............................. TAGTTTGAATGATATTGTTCGTCTTGATTGGT 55516 29 100.0 32 ............................. AGTATAAAATGTTATACTTTATATAAAGAAAA 55577 29 100.0 32 ............................. GATTTAACTGGAGATGCTGATGAATGGAATGA 55638 29 100.0 32 ............................. GAAAAATGGAATAAGAAAAATAAGGAGCGAAT 55699 29 100.0 32 ............................. GATGGTAGCTACCAAATTAACAGAATAAATAA 55760 29 96.6 32 ............................C CTAAAAAACGCTGGTATATCAGTAAGAACTTT 55821 29 96.6 32 ............................C ATGATTACAATGTAATCACAAGTCATGAATAC 55882 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCACGTATGTGGGGGTGATCCT # Left flank : GGTAAAGATCAAATTATTTCTATTGGAGCAGTTAAACAAATTAATGATAAAGAGTGTAATAGTTTTTATAGATTAATTAAAGTTGATACTGTAGTTCCTAAGGCAATAACCAAATTAACCGGTATAACAGCACAATTATTAAAAGAAGATGGGGTTACTTTAGATCAAGCTCTTAGAGAACTAACTGAGTTTGTTAATTCTGCCACGATTATTGGCTATAATTTACAGTTTGATTTATCCTTTCTTATGTACGGCTATAGATTTGTAAATTTAAAAGAACCGGATAATAAAACTTTAGATTTATTACCTGTTGTTAAAAAAGTGGAAAAATTTATTGATAATTATCGTTTGGCAACTATTTTAGATTTTTATAATATTAAGAATTCAAAGCCACATAATGCACTATCTGATGCTAAGGCTACGTTGCAGTTGTTATACAAACTGATGGAAAACGGAAAAATTAAAGTTTAAAAATAAAGGTATAACAAGGATCTTTTACT # Right flank : TAGAAGAAATAATTCCTGTTTTAGCTTTGAGTGGTGTTCAAAGTGACTTAAGTTAGGTTATTGTTGGTGGAAATGTTGCCCAATGTGCTCTACAACTTTAGACCAAGTATTTTTGAGTATTGGCTTGCATATGAAGGGTTTGCTTCTCTTACGCTAATTGCTGTTTTTGCTGAATAAGTTTTTGTGGATGTGCTTGATTTGGTGGTCTAATTCTTGGCTAACAATTTTTTGATCAGTTAATTCAACTCCTAATGCAACACTTTTATTTTTTTGTTGCAGAGATAAGGTTTGAGCTTGGTCAACGGCACGCATAGCCTGCTGGTATTCGTGGACGTTTTTTAATTGATTGGCTAAGCTTGGTTCACGTTCAATGTCATATTTACGCACTAGTTCAGTTAGACGGATCGGCTTAACGGTTACTCCCTGCTGTGCTGCTGTGCGCCTTTTGAATGCGCGAACCAAGCTCGTCCATGTGTATCACCGCATTGTAAAACTGCAAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 90451-92664 **** Predicted by CRISPRDetect 2.4 *** >NZ_REHD01000003.1 Lactobacillus sp. ESL0245 Ga0226849_103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 90451 36 100.0 30 .................................... GCATTTTTAGAATTAAGCAGTATATCTTAT 90517 36 100.0 30 .................................... ATTGTAAACCTGTAAATTGGGGTTATTCTG 90583 36 100.0 30 .................................... TAATCTGTTCATCTTTTCCCACCTCCTGCT 90649 36 100.0 30 .................................... AATTAGTCTATTGTGATATACTAATAATAG 90715 36 100.0 30 .................................... TTACTAAACAAGCAATTACTTACTTTGTCA 90781 36 100.0 30 .................................... TTGTCTGATCTAATTCTTTTTCATGTTCAT 90847 36 100.0 30 .................................... GTGCTTGATTAAGTACTTGCCTTGCAACAG 90913 35 97.2 30 ......................-............. CATAGCAGTATTAAAACATCAACAATCGGC 90978 36 100.0 30 .................................... TGATTGAACGAAAAATTAAATTTATTTATT 91044 36 97.2 30 ...........C........................ AAAAATACCACCCATAGAGCAATCAAACTT 91110 36 100.0 30 .................................... AAGTTAAAAATACTAAGTTAAATGATTGAT 91176 36 100.0 30 .................................... TTGTCGACACAAACACTGGACAACAAACAT 91242 36 100.0 30 .................................... TTGGATTGAGAATGCCCCCAATAGCAAAAC 91308 36 100.0 30 .................................... ACGATTGCAATCAGTACGGCTTATGACAAT 91374 36 100.0 30 .................................... TAGTTTTTAGCAAGCTGGGCTATCCAGCCA 91440 36 100.0 30 .................................... GCCTGATGATAATAAAAAATTACAAAAAAT 91506 36 100.0 30 .................................... CCGTAATTAATCATTTTTTGTATATCTCCT 91572 36 100.0 30 .................................... TTACTAGTTTGCGCATTAATTTAGACGGAA 91638 36 100.0 30 .................................... AAGCAGCAATCTGAGATTGATACCTCGACT 91704 36 100.0 30 .................................... ATTCCGAGGGTACTTTAAAACTTGATAATT 91770 36 100.0 30 .................................... CTCGAACTTCAAGGTATTAGAAAAAAACAT 91836 36 100.0 30 .................................... AATTTTTGAATTGCAAACTGCAATCCGGTG 91902 36 100.0 30 .................................... AGTTAAGGAGTGATATACGTGGTAAGTGAA 91968 36 100.0 31 .................................... TTAATTTACTAATATATAATAACCTTAAAAT 92035 36 100.0 30 .................................... AATACCTTTGCCTGATTGGCTGATTTCCAT 92101 36 100.0 30 .................................... TTATGTTGTCATGGTTATGCAGAGTCACCA 92167 36 100.0 30 .................................... GATCTACGTGATCTGGTAGAACGAAATTGG 92233 36 100.0 30 .................................... ACCACTGGTTGAAGCATTCTGTATTAATTA 92299 36 100.0 30 .................................... AAAAAAGCTAGAAAAAAGGCGAGAAAGCTT 92365 36 100.0 30 .................................... CAGAAAATGAAATAGATTTTAAACTAGCTA 92431 36 100.0 30 .................................... TTAAGAATATGTATACCGCCAAAGTTAATC 92497 36 100.0 30 .................................... GCACAGCCTTATAATCGTTGTTGCTAAACT 92563 36 100.0 30 .................................... AAAAAGAGCTGATAGATATAATCGCATCAA 92629 36 91.7 0 ..............................C.A.T. | ========== ====== ====== ====== ==================================== =============================== ================== 34 36 99.6 30 GTTTTAGATGGTTGTTAGATCAATGATGATTAGAAC # Left flank : AGTGATAATATAATTAAAAAATACATGTCAAATATTTTAAATAGTTATATTGCTAATATTAACGAAAATAATCGAAATCAAATTTTTGTTGCATTGCAAAATTTAGAGGGAGCTATTGATGATTCATTAATGCTGGAAGATTTACCATTAATAATTGAGTTTGATGATGATTTGAAAAAACTTTTAAAATTTGTTGATTTACACATAGATTCTAAATTTACTAAGAATCCATATGCTATAATAGATCTGGTTCTGAAAATTCATCAATCATGTAACTTGAAATCGATCCCTGTGATGTGTAATTTGACACACTATTTAGAACGGGATCAATTGATAGAGTTATCAAGTTTAGCTCAACAAATGAATAGGATGGTAGTCCTTTTAGAATTTACATCCCCAGATTTATTGGTTGTACCTGAGGGTGTGCAATTTTATTATATTGATCAGGATCTAATCGATTTGTACTGACATCTATATTAAAACTTTATTATAAAATATCG # Right flank : CCAAAAAATGGTGTGGATAGTGTTTTAACCAGTTGTTTAGAAAAGATGCAAAACTTAATGTATTATTAACTAAAGAAAAAAATATATGTTTTAATTGTAAATATTATGTAGAAATTGTTCATCAACCTATTTCAGTTAAAGACGTTGTAAAACAAAATAAAGGATATTATTTCCTTGATGTTTTAGCTACAGTTATATTGTAATATTCACATTTAAAGGACTAATTATAAAATTATATATCTTATTTGATACAAACTAATGATACTAGAAAAGCACTAAACCACGTCCGGTTTAGCGCTTTTCTAGTATTGTATTAATTAAGAATGGCTGGTTTTATCCCATGAATTGTGTCCACTTAATTGTCTCACAATTGAACAAAAGGGAACAATAGCCAATACCCAGCGATATAAACTAAAACTGAAAACACTTTTTATAATTTGATTAAAACTCAATTTAATATTGCCTTCGGAGGCCTTTAATTGTTTTAAAACCATTAAAGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGGTTGTTAGATCAATGATGATTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGATGATTGTTAGATCAATGATGATTAGAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //