Array 1 21480-22626 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB899580.1 Megamonas rupellensis DSM 19944 F553DRAFT_scaffold00015.15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 21480 30 100.0 34 .............................. GAAACTTATTAGATCTTTAGAAGGAGATATGTAA 21544 30 100.0 36 .............................. AAAATCTCTATCTTGATACTTTAGTAATAACTTGAA 21610 30 100.0 38 .............................. ATGTTTCGGTTGATTTCACAGCAACAGTTTTGCATATT 21678 30 96.7 35 ................T............. AAAATCTTTTGATTGAGTTCTCTTAGCTTCTTGCC 21743 30 100.0 36 .............................. AGGCTTATTCAATTTCCTAATGGAACGTTTAGAAGG 21809 30 100.0 34 .............................. ATCTCTTGCATTCACTTGAACAGCATTTAATACG 21873 30 100.0 35 .............................. AAAAAGAGTATGAAGGCTCTGTTTGGTATGATAGG 21938 30 100.0 36 .............................. TTTGTTATACCTCCTTATGTATTTATAATAACATTA 22004 30 100.0 36 .............................. TTATAAATAAGGTTGTACGCTCTAAACGGAAGGGCA 22070 30 100.0 36 .............................. TTATAAATAAGGTTGTACGCTCTAAACGGAAGGGCA 22136 30 100.0 36 .............................. TTATAAATAAGGTTGTACGCTCTAAACGGAAGGGCA 22202 30 100.0 35 .............................. TGTACGCAACGAATTGCCCATTGACGAGACTTTTC 22267 30 100.0 36 .............................. TGGCGCTTTCCACGTCTAACTAAATTATAGGTATTA 22333 30 96.7 36 ................T............. CATTTTTATTATAGCACAAAATAGGGGTTTTTTATT 22399 30 100.0 36 .............................. GCTTGTACGGAATGGTGCAGACTTGTTATGCACCTG 22465 30 100.0 36 .............................. AGTATTAAAGATAGTAGGAAACGGCTAAAACAAGTA 22531 30 96.7 36 ................T............. ACGTGATAGATGGTGTCCAAAATTTGTTGACAAGCA 22597 30 90.0 0 ................TC........A... | ========== ====== ====== ====== ============================== ====================================== ================== 18 30 98.9 36 ATTTAACTTTAACAAGAGTTGTATTTGAAT # Left flank : CAAGGTTCAGGTTGTGCTATTTCCCAAGCTTCCACAGATATCATGATTGATTTAATGCTCGATCAACCAGTCGATAAAGCTAAAGAATTATGTCGTTTATTCATTGGCATGGTTCAAGGCACAATCACTGATGAAAAAGAGCTTGCCCCTTTAGATGAAGCTCTTACCTTTAAAAATATATCCAAAATGCCAGCTCGTGTAAAATGTGCCGTACTCAGCTGGCATACTATGGAAACAATCCTAGACAAAGCCCTCCAAAACTCTCAATAAATAAAAAGTATCATCTTGATTTAAATAGTTCAAAACTAAAATTAAGATGATACTTTTTTTATCTAAAATTTACCAAACAAAATCAAGAAAAATCTCGCTAATCCTTGATAAATAAACTTTTTTACTAAATCCCTTCAAATCTCATTATCGCTGGTGAAAAATAACTAAAATCCTTGTTTATCAATACTTTTAATAGTATAATAAAAACCATAAGGATTAATTTTTCTAGC # Right flank : TTAACTCTCTAGCATTAGTATAACAATGAAAAAAGCCTTAGGAACTGACCCTTCCTAAGGCTTTTGTGCGTCATCATGAGTTTGATTTCGTCTATACTTAGTATAATATATTACATAGATTTTGCAATACAAAGCTTATTATTATCGTGCAAATTAGAAAAATAGACTTATATCTTTAATTCTTCTATATCAGCTAAGAGCTTATCTAATTTTTCTACTATACGCTTTTGTTCTGCTAACGGTGGTAATGGTATTAATATCATCTTTAATTTATTTATACTAACTCCACCTATTATTCCTGTCATATTAATTTTAAAATTATTTATAAATAAAGGTGCTTGTACTACATAAAAAATATATCTATCATAAATTTTCATAGGATTAAATGAACATAACTTATTACCAAAACAAACATCTTCTTTTAAAAATCCTACTTTTCTTCCTGCACTTCCACCTTCAATACACATTAAAGTAGCACCTTTCTTAGCAATTTTGAAATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTTAACAAGAGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 9642-8885 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB899584.1 Megamonas rupellensis DSM 19944 F553DRAFT_scaffold00019.19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 9641 30 100.0 37 .............................. TCTGTAAAAAGTACAGTTGGTGTATTAAAAACAGCAG 9574 30 100.0 37 .............................. ATCCATTTTATTAATCTAATAACTGGTTCATTTAAAA 9507 30 100.0 36 .............................. AATCTAAAAATTTTTATGAAGGGCTCCAAGAACATC 9441 30 100.0 36 .............................. GTAGCGAAGAACCATACGATAGATGGTTTGGTACAG 9375 30 100.0 37 .............................. AATTAGACCATAACTTATTTATTTTTTGTCTAGTAAA 9308 30 100.0 36 .............................. ACACGGGGTGTATTTGATTTAAATTTAAATTTTATT 9242 30 100.0 34 .............................. ATATATAAAAAACAATTTTAAATCCTAAATGTGC 9178 30 100.0 37 .............................. TGGGTTTATACAAATGAAATATGATGTACCTACAGCT 9111 30 100.0 36 .............................. AGAAGCACAGTCTGCACTTAGTGGTGTGGGTTCAAA 9045 30 100.0 37 .............................. GTTATAAAGCTAATATAGAAAAACAAAATAATTCCAA 8978 30 100.0 35 .............................. GCGATTACTGATGAAAAGATATATACTTCTGTATT 8913 29 76.7 0 ...............TT..A-.....CT.A | ========== ====== ====== ====== ============================== ===================================== ================== 12 30 98.1 36 ATTTAACTTTAACAAGAGTTGTATTTGAAT # Left flank : AAATACTCATCATAATTCTTTAGATTTATTCTTCATATCACCAAAATATCATGGAGACGGCTTGGGTCTTGCAACATGGAAAACCATTGAGAAAAAATATCCCGATACAATCACATGGAGAACAATTACGCCATATTTTGAACAAAGAAATATACATTTTTATATAAATAAATGCGGATTTCATATAATAGAATTTTTCAATAAATATCACAAAGAAAAAAATATGCCCAATCATATAAATGATAAACCCAATCCATGTATAGATAATTATTTTCTCTTTGAAAAAAAGATGAAATAATCCAAAGAAATGCTACTTGCCAAAGATATTTTATCTCTAATTTTACCAGCTAAATTCTTAAAAAAGCTTTTCATTACCTGAAAAATAAGGCTTTTTATAAAATCTTTAAAATTACCATTATCGCTGGTAAAAAATATCAATATCCTTGTATATCAATACTTTTAATAGTATAATGAAAATCACAAATACTGATTTTTCTAGC # Right flank : AATAACTTTTCCACTATTTGATAAATATGTAGATAATTATAAAAATAAAAACTCATGGATTAAAATACCCATGAGTTTTTATTTTGCTTTATTCTTTATTAGCTATACCTAATTTACCAAAAACATAAAACGATAAGCTGAGAATCATGCCACAGACAACAGCAAGACCCATACCTTTTAATTGTACAGGACCGATATTTACAGCAGCTCCACTAAGACCACTTATCATAGTTACGGCAGTAAGTATCATATTTTTCGTACTAGTATAATCGACTTTCTTCTCTATAAGCATACGTATACCAGAACAAGCGATAACACCAAATAATAATACAGAAATACCGCCCATTACTGGTACTGGAATAGCATGAATAATAGCAGCAATTTTACCAATAAAAGAGAAAAGAATAGCAAAAACAGCAGCTCCACCAATTACCCATACACTATAAACACGAGTAATAGCCATAACGCCCATATTTTCGCCATAAGTAGTATTAGGAGTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTTAACAAGAGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 16819-13506 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB899586.1 Megamonas rupellensis DSM 19944 F553DRAFT_scaffold00021.21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 16818 30 96.7 36 ................A............. AATTTTTTATAAAATCCATTTAGAGAATACATATTT 16752 30 96.7 35 ................A............. TAAATCTGTAAATATAGAATTAGTTTTATAATTTA 16687 30 96.7 37 ................A............. AGCCTTAGGTAGTGGCAAGCTACAAGGTGATGAATTT 16620 30 96.7 35 ................A............. AAGTAGATAACATACCCAGATGTTAATTGTGTCAT 16555 30 96.7 35 ................A............. TGATTATTACCTTCTTTATTGTTTTTCTTTAATTT 16490 30 96.7 36 ................A............. ATGTATCTGTGAAGGCTATGCAGACGATGGTAAAAA 16424 30 96.7 35 ................A............. AAAATAACTCTAACTGTTCCGTTTCCCGTATTTAC 16359 30 96.7 35 ................A............. TAAAAAGGTCATGAAAGAAGGTCAATATGAATAAT 16294 30 96.7 36 ................A............. ACACTAACGAAGCCCGCGAGCAGTTGAGATGAGCAG 16228 30 96.7 36 ................A............. TACGTGTGCTACACTTTTAGATAATGCAGAAGCTAA 16162 30 96.7 36 ................A............. ACAATCTTTTAATAGAGCAGTAAATAATAATAGTTT 16096 30 96.7 37 ................A............. TGGTCTTGTAAAAGGTGAACCTAGTAATTGGAAACGA 16029 30 96.7 36 ................A............. AGCAAAGGAGACAGCTTTTGGTGTAGCTAGTGCTGT 15963 30 96.7 34 ................A............. TCTACTGTGATAATAGAATTATTATTTATGTCAA 15899 30 96.7 35 ................A............. TCTTTTGCACCTTGGGGAAAAATCATTCCTCCTGG 15834 30 96.7 33 ................A............. AGAAGCTAAGGATTGGATAATAACTATACAATC 15771 30 96.7 35 ................A............. TCATCTGTTTCTAAATCTCTAGCAGGTTTGTAAAT 15706 30 96.7 36 ................A............. TTTGTTTAAAGTAATATATCATATCGGCAGAACTAA 15640 30 100.0 36 .............................. ACAATATCATTCATTTTATCTATAGTTGGTTTTATT 15574 30 100.0 34 .............................. AAGAAGAAGTTTATAAAATTTTTCAAGTAAATGA 15510 30 100.0 36 .............................. TGTTTTGGCTACCTTCTGCTGGTTTTTCTACTCTAA 15444 30 100.0 36 .............................. AAACTAGGCAAAGTAAGTTTAGCAAGTCCCATAAGT 15378 30 100.0 36 .............................. TTAGCTTCCCAAGAACTATATAACATTTCTACATTA 15312 30 100.0 35 .............................. TTTTTTTAAAAAATCCCCACTGTATAATTGCGTCC 15247 30 100.0 37 .............................. TCTGAACAAATTAAATCGTGGGCTATCTCTTTTTCCC 15180 30 100.0 35 .............................. ATGGTATATTTTAGATTGGCGAATATTAGGATATA 15115 30 100.0 35 .............................. AAGTGCTGACTTGCTCCTGTAGCTGTGTTGATTGA 15050 30 100.0 35 .............................. TAGTGCTACTGAAAAAAGTTCAGCAGACTACTGAA 14985 30 100.0 35 .............................. TATTTGATTATGAATTCATCAAATCCACACTGTTT 14920 30 100.0 37 .............................. TAGCTTAATTTAGATAAAGCCATAATAAAACGTTTAG 14853 30 100.0 36 .............................. TATTTAATCCCTCCTAAAATTATAAAACCAATATAG 14787 30 100.0 36 .............................. TTCCAATTATCACACATTTAATTTTTCTCCTTTACT 14721 30 100.0 36 .............................. TAAAAATGTTTTTAACATTTAAAGCAAAATTTTTTA 14655 30 100.0 36 .............................. TCTATTTCATTTAAAGGAAAATGTATATATTTTTTC 14589 30 100.0 36 .............................. TTAAAGAAGTAAAACCTGATGTATATATTTTTGATC 14523 30 100.0 36 .............................. AAAGCAGCACGAGATAATATGTCAATAAGTTTTAAA 14457 30 100.0 35 .............................. TGTTTATAATGTAGATTGGTTCTTGTTTCTTTTAG 14392 30 100.0 35 .............................. TTGACAATACTCAAAGCACAGATGCTAAATACACA 14327 30 100.0 37 .............................. TCTGTAAATAATACAGTTGGTGTATTAAAAACAGCAG 14260 30 100.0 37 .............................. TCATAACTGTTTTCACATATTAATTGATATACAAACA 14193 30 100.0 36 .............................. GATCCATTACTTAATAGCTTAGTTCCTTCTTTAACT 14127 30 100.0 36 .............................. GTTTCTTCTGTTGTTTCCTCTAGCACCCAATAAGAG 14061 30 100.0 35 .............................. TTAAGAGGGCATGTCAATATTATTTTTAATATTTT 13996 30 100.0 36 .............................. TGTAGTATTTATATCTATATCTCCTGAACTTTTATC 13930 30 100.0 36 .............................. GGAAATTTGTCTTTATTTAATCTGCAAAATGTAGCT 13864 30 100.0 37 .............................. TAATTGTTTTATCTGTTTTACTAACTGATTGAACTAT 13797 30 96.7 34 ................A............. TGTGTAATAATCTTATTTTTAAACTGGTCGAATT 13733 30 96.7 34 ................A............. TATAATTTTAAAACATCATGTTTAAAGCATTCTT 13669 30 96.7 37 ................A............. GTATTTAGCATATAAAAATTTTAAAGTCAAGGTGTAA 13602 30 100.0 37 .............................. CTTTTAACCATGCAAAATCACTCTTTCTACCTGTCTT 13535 30 83.3 0 .......................CAAA..A | ========== ====== ====== ====== ============================== ===================================== ================== 51 30 98.3 36 ATTTAACTTTAACAAGTGTTGTATTTGAAT # Left flank : TTATCCTCTTGCTAAAAAATATTTAAAAGGTTGCAGTGGTGTTATCACTTTCGTAATCAAAGGTGGTAAAGAAAACGCTGTCAAATTCATGGACTCCTTAAAATTAGCTTCTAATGAAGTTCATGTTGCCGATATTCGTACTTGTGTTCTTCACCCAGCAAGTGAAACACATCGTCAATTGACAGATGAACAACTTGAAGCTGCTGGTATCAATAGCGGTATGGTTCGTTTCTCTGTAGGTCTTGAAGATATCAATGATATTTTAGATGACTTAAAACAAGCTTTTGCTAATGTAAAATAATTATTTAAAGGCATTTGTGTAAACAAGTGCCTTTTTATTTTCCCAGCCATTTTTTAGCTTAAAACCTGAAATCCTTATAAATAAAGGATTTATTAAAAATCAAAAAATCAATCTCAATCGCTGGTAAAAATTTTCATAAATATTGATATTTCAACCTTTATAAACTATAATTATTTATAAAAGTATTGATTTTACTGGC # Right flank : TAAAAGCTGTAACAAAGAGAATTTCTCAATGTTACAGCTTTTTTTATTAATTTTATAATGTGGAAAAGAAAAAGTTTATTAAAATTGGTACGGCTACTGAACATAATACACCATTAATTACAGATATAATAATAAATTCTTCACTACTATATTTTATAAGCATTGGCAAAGTAGTGTCTTCACTTGTAGCTCCTGCCGCTGCTATAGCTGCATATGTATTTAAATATTTTATTAAAACTGGAATCATCATAAAAGCGATAAATTCTCTCATCAAGCTACTCAAAAAGGCTATTGTGCCTATCTGTGCATTTGCTAGTGATTCAAGCATTACCCCTGATAAACTATACCAGCCCATAGATGCACCAATAGATAAACTATATACCAAATTCATATCAAAAATATAACTGCAAATAAATCCGCCAAAAACAGACCCAATAATTACACCTATAGGAATCAATAATATTGTCAAATTATAATTTTTTATCTTCTCAATTATTGAT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTTAACAAGTGTTGTATTTGAAT # Alternate repeat : ATTTAACTTTAACAAGAGTTGTATTTGAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 32363-31941 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB899569.1 Megamonas rupellensis DSM 19944 F553DRAFT_scaffold00004.4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 32362 30 100.0 36 .............................. CTCTCCTAGAATAAGCATCTAGGCACGCTGATATGG 32296 30 100.0 35 .............................. AGAAATTCGCTTGCCTGCTTTTTACATGGACGCAA 32231 30 100.0 34 .............................. ATGGCCATTATTTCTTACCTCCTAAACTTTTTAT 32167 30 100.0 34 .............................. CCAATTCCTTACGAATATCATTTGTAAAAGCAGA 32103 30 100.0 35 .............................. TATAAGCAAGTGCTCCTATTGTCCAATGTGGTCGA 32038 30 96.7 35 ...........................A.. GACCATATAAATACTCAAGTTGATGATACTGATGT 31973 30 80.0 0 ..............C.....A..A.T.A.A | A,TA [31946,31950] ========== ====== ====== ====== ============================== ==================================== ================== 7 30 96.7 35 GTTAAGCATTAACATTGTACGGTCTCCCGT # Left flank : CAGAATTTATAGCAGGGAAAAAAGCATTGAATAATGCTGGTGAAAAAATGGGAGATTATATTGTAGAAAAGCTTTTAAATTATGGTAGTGAAAATACACAAAATATAGAACTAAAAATTATAACCACTGATTATAATAAAGTGAATATGGTAAATAACGCTTTACAGAATATTCGAGGAGTAAATTCAGCAAGGGTAAATAGTTATAATGAAGGTACAGCAACTATTAATATAAAATATTCAGGAACACCACAGAATATTTATAATCAGTTAATTCAAAATGTAAATTGCAATCTTAAACTGCAACAAATTACGTATAATACTTTAACGATAGTAGTATATTAAGTTTTATTTACCAGCCGAAAAAGTAAAAAGCCTATGAAATCAAGCATTAAGAAGGATAGGCAGAAAACTGAAATCGGCTGGTAAATTTTCTATGAAAGATTGAAAAATAAGGATATATAAGATATAATGAAGAAAAAGAATATTGATTTTACTGCG # Right flank : TTGTAGAATAATGCTAAATTAATTTATGGTGAATTTTTGATTAATATTAACAAGTGATGCTTAGCAGTAAAATGAAAGAAAGACATAACTTAGATTAAAAGTTATGTCTTTTTTTATAAAAATTTTTAAAAACTGTGCCGAATTTTGGAAAAAGTAGGGGATATATATAGTAAAGATTAAAAAGGGTGATGAAAAAATAAATAAATATTAAATTTAAAGGTAAACTAAAATTTTATGATTAAGATTGGAGCTAGTATTATGAAAAACAAAGCAAATGAAATTAAAACAAAAATTTGTATTCCAAAGGGAGCTTTCGGTGGGAATTGTTCAGGTTGTCGGTATTGGGAAGAATATAATAGAGACTCAAGCGGTAGAGCATTTTGTAGTTATTATGATGATTGGTATTATCCATCAGAAAGACGAGGCTGCTTTGCTCGGAAGGAATAAAAGAAGATGAGTTTTGCCAGCCGAAAAAGTAAGAAGCCTATAATATCAAGTCT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAGCATTAACATTGTACGGTCTCCCGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 30956-34679 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB899570.1 Megamonas rupellensis DSM 19944 F553DRAFT_scaffold00005.5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 30956 30 100.0 37 .............................. TGCTCTAATCCTACTGAGCTACAGCCCCGTACTAATA 31023 30 100.0 36 .............................. AGATATTTACGTAGACCAAAAAAACGGTAATGATAA 31089 30 100.0 36 .............................. TCTAAATATTTTAATTTCTTACCGTCCCAACACGCT 31155 30 100.0 37 .............................. TTGGCCTTTAGGTGGCCCTATCACTTCTGAATATGGC 31222 30 100.0 36 .............................. GTCCGAATACTTCTTAATCGACTATGACAAATTGTC 31288 30 100.0 36 .............................. TCCGCACTTATATTCTGTTCATAATATTTTCTGAGA 31354 30 100.0 35 .............................. GTTAAAAAATACAGAAATAAACGGTATGCAATTAC 31419 30 100.0 34 .............................. ACGATTTTATCCATAGCAATTTTTTCAAAATAGA 31483 30 100.0 37 .............................. GATACTTCACTACATGGCAATTATGGAAATGGATTAC 31550 30 100.0 35 .............................. AAAGAAACAGTACAAACTAAACCTGTAAAAAAAGA 31615 30 100.0 36 .............................. AAACGCTGGAAATGCTAAAATGCGTATATCTATAGG 31681 30 100.0 35 .............................. TGGCTCTTTGCAATTTGTCGCCGTCGAGCCCTGCC 31746 30 100.0 36 .............................. ATTGGAAGCAAAAATATAATTGGCAAGAACGTTGTA 31812 30 100.0 38 .............................. TTTCTAACAGGAAATTGTTTTAAATCGGTAGAAGAAGC 31880 30 100.0 36 .............................. AAACGCCCTAACAGGGCGTCTGCTGGAATTAGCCTA 31946 30 100.0 35 .............................. ATGCTTCCAGGATTACAAACTCGATTTGCTTCAAT 32011 30 100.0 37 .............................. AAAGGATTTGCTGTATTATATTTGGTTACTAAGTTTT 32078 30 100.0 37 .............................. TCTATTATTTGTTGCAGATGGTAATATTTAATACTCT 32145 30 100.0 37 .............................. TTCATATAGAACGGAACTAAATCAGCTGATACTTTAA 32212 30 100.0 36 .............................. GCTCGTTCAAGTTTGTTTCTAATTGCGTCAATTGTG 32278 30 100.0 36 .............................. AGCTGCCAGTATATGCATTTTGCCCATCTTGAGAGA 32344 30 100.0 35 .............................. TAATCAACCTTCATGTTCCGGTGTGTTATAAGGTG 32409 30 100.0 34 .............................. TCTTGCATTGGACATCCTGTTCTTTGCCAATACT 32473 30 100.0 35 .............................. GTTAAATTTAATATTTTTATAAATATTTTTATAAT 32538 30 100.0 36 .............................. TTAGGTATCTCTTTATCAAAACACCCCATAGGACTT 32604 30 100.0 34 .............................. TTAGAAAAATATTTATATGGAATATCACCATTGG 32668 30 100.0 37 .............................. TTAGAAAAATATTTATCTACTCCTAATATTTCGCCAG 32735 30 100.0 39 .............................. TGTTTATCCTAAAATGATAAGGCTCTCCGCTATATTCCC 32804 30 100.0 34 .............................. ATACCTGCATTTTTTACTGCTTCCCAGTCAATAT 32868 30 100.0 36 .............................. TAATACACAGCTGTTAGGTGATGATATAGAAATGAC 32934 30 100.0 36 .............................. TTTTTACTGGCCAGAAATTCTCCAGCCACATCACCA 33000 30 100.0 34 .............................. TTACTTGGAGATTTATATGGAATATCACCATTGG 33064 30 100.0 36 .............................. TAGGTTGTAAGTGCTAAATTAGCCGAACTTATAGAA 33130 30 100.0 36 .............................. TTCTATAACCAATTCTTCAAACCTACCTATAAATCT 33196 30 100.0 36 .............................. AGCCTTTTTTTTACTAACTGGATTTCTTTTTACAGC 33262 30 100.0 36 .............................. TAGTAAGTGTAAAGTTTTTAATAGGCGGTTGTTCTG 33328 30 100.0 37 .............................. ACGAAATTGACAATGGATGTGCTGAAGAAGAATTTAA 33395 30 100.0 36 .............................. GTTCCCCTGTGTAGTCTACAGCTCGCATACGTGCTG 33461 30 100.0 37 .............................. TAAAAAAGGTGAGAGCATTATTTATACAGGAAAATCT 33528 30 100.0 36 .............................. ACCTAATGTTGTAGGTGAATATAACACTAATGCTAT 33594 30 100.0 36 .............................. GTATCTTTAGCGATTAAATGATGTATAACTACTTTT 33660 30 100.0 33 .............................. TTTATAAAAAAAGCGGAAGCGTTGGCTAAAGGA 33723 30 100.0 35 .............................. ATTGTAGTTGTTCCGTTAAGTGTTATGCTAGATGA 33788 30 100.0 37 .............................. GCAGAAGCTAAAGATATGTCTAATCTAGATAACCCCA 33855 30 100.0 36 .............................. AAATGCCCTTCTGTTCTAGTTACAGTATATATTTGC 33921 30 100.0 35 .............................. AGCAATCCTAGTCCAGCAGAGATTGTGGAACAGCT 33986 30 100.0 36 .............................. TAGTGTTGGTGCTGGTAAAACATGGACTATGCAAAC 34052 30 100.0 37 .............................. TTTATACAATTACTTTCCTTAAAATTTAAAGTGAATA 34119 30 100.0 36 .............................. TTTATTTTTACCGACTGAATAGCATAAATATTTTTA 34185 30 100.0 38 .............................. GGCTTTGGTAGATGTAGATACAGATGTTCAACAGACAA 34253 30 100.0 37 .............................. TCTCGATTATATGTGAACAAAATAAAAAAATCAATAG 34320 30 100.0 36 .............................. TATGTCTGTTTTTATTTAAACACCCGCAAGATTTAG 34386 30 100.0 35 .............................. AATCGCACCAAGACCAATTCCTGCTGTTATCGCAC 34451 30 100.0 36 .............................. TCCTGATATTTGGCAAAGATAATACATTTATCATTG 34517 30 100.0 37 .............................. TGGGGGTGCTTAGTCTATGGACTAGGCACTCTTTTTT 34584 30 100.0 36 .............................. TGTAGTGCAGGAAAAACTATTGTTCCACCATAATTA 34650 30 93.3 0 ........................C.A... | ========== ====== ====== ====== ============================== ======================================= ================== 57 30 99.9 36 ATTTAACTTTAACAAGTGTTGTATTTGAAT # Left flank : ATTATATCATAATTATTCATAAATTCTAAGACAATACGAAAAAAGATTACATATTTTTAAGTTTTACTATTGAAAATTATTTATTTATTAAATTTTATAACATTTTAGTCATATGAAAAAAATTATAAAAAAGTATTGCAAAATACATAAATGAGCAGTATAATAATTTTTGTTATTAATGACTCACTAGCTCAATTGGTAGAGCATCTGACTCTTAATCAGCAGGTTCCGGGTTCGAGTCCCGGGTGGGTCACCATATGATTTATAAAATTAAAGCAACTATCATTGATAGTTGCTTTTTGTTTTTTACTACTTGATAAAATTTTATTTACCATAAAATTACCAGCTAAAATTAAGAAAAACTCCTCTAAAGCTTGAAAATTAAACCTTTTTATAAAATCTCCAAAAATCCTATTATCGCTGGTAAAAAACAACTAAAATCCTTGTATATCAATACTTTTAATAGTATAATGAAAATCATAAAGATTGATTTTTCTAGC # Right flank : TCTTATTATTAAAAAATTATAAAAGGCTTTTAATAGATTTTGTCTTCTATTAAAAGCCTTTTTTTTATTTAGAATTATTTTTCAATTTCTCTAAAAATTTCTTATCATCTTTGCTTAATTCTACTTTTTCAAGTAAGTCTGGTCTATTTGTATACGTAACACGCAAAGATTCTTGTCGACGCCATTTTGCTATTTTAGCATGGTCTCCTGAAAGTAGTACATCAGGTACGCTAAGACCTCTATACTCACGTGGTTTTGTATATTGTGGATATTCTAAAAGCCCATTATAAAAAGAATCTGTTGGCGCAGACTCTCCAGAGCCTAATACGCCTGGAAGCATTCTTGATACAGCATCAATTACCACCATAGCAGGAAGTTCTCCACCTGTTAATACATAATCGCCAATAGAAATTACTTCATCAGCTAAATTTTGTACCACACGATTATCAAAGCCTTCATAATGACCACAAATAAATATTAACTGATCAAAATTAGCAAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTTAACAAGTGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.10,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 9355-8738 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB899606.1 Megamonas rupellensis DSM 19944 F553DRAFT_scaffold00041.41, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 9354 30 100.0 36 .............................. CAGCACTAAAAACAGCAGGTACTTAATAATAAAAGT 9288 30 100.0 36 .............................. AAAGTACTTATTGCACCAATCATAGTTAGCATTAAT 9222 30 100.0 35 .............................. TTAAATGCTCTTTGGCTTCTTCTGTAGCTTCCTTG 9157 30 100.0 36 .............................. GATGTTATTAGTTATGGTACAGGCGAAGCAGGAGAG 9091 30 100.0 36 .............................. GCTTTACCTGCACTAACTAAAGCTTGCTCCGCGTAA 9025 30 100.0 34 .............................. CCTTAAAAAGTGAGCAGCTCATATATTTAGGAGG 8961 30 100.0 34 .............................. GAGCAGGAAATTCCAATAATAATACATGGACTAT 8897 30 100.0 35 .............................. AACCAAGAACAATATCGAGGAGATAATTCAGTCGA 8832 30 100.0 35 .............................. ATGCCAGTAGGTGTATATGTGATATCAAATGAAAA 8767 30 96.7 0 ..........................T... | ========== ====== ====== ====== ============================== ==================================== ================== 10 30 99.7 35 GATTAATAGAAACAAGAGTTGTATTTGAAT # Left flank : CAATAGATATCAATACAAGAAAACCATTACTTGGCAATATCACAGGTGGTCTTTCTGGCCCTGCTGTAAAACCTGTAGCACTTCGTATGGTATGGCAAGTAGCAAAAGCTGTAAACATTCCAATTATTGGTATGGGCGGTATTGCAAGTGCAGAGGATGCTATTGAATTCTTGCTTGCAGGTGCAACAGCAGTAGCAGTAGGAGCACATAACTTCATTGACCCATCAGCATTAAAAGTAATTGCAGATGGTATTGCTGAATATATGCAAAAACACAATATTGAAGATGTAAATGAACTTGTAGGAGCATTACAAGCTTAAATAAAAAATTACCAAGTGAATTTTTACTAAATAGCCTATAAAGCTAAGCAATATAAGCTTTATAGGCTATTTTTTTTATATAACTAATAAAAATCAAAATCGCCTGGTAAAATTTTTTTATATCCTTGAATAACAAGACTTTAGAAGCTATAATAAAAAAGAAATGCTAATAAATATAGG # Right flank : GAATTAGGAGAGATAAATAGTTGTGGAAAATGTAAAAGATATAAAGAAAGTTATTATTGATATATGTTATCAGGAGGGAATTACAAGAAGGGATTTAATAGCGGTATACAATAAAAAATATAATAAAAATTTATTGGAACAAACTTTTACAAAAACATTATCAAATAATAATATAAAATTTAACATGTTGGTAGACTTGTTAGATTCTATAGGTTATACAATAGATATTAGAAAAAAATTATAAAGAGATTTGTATTTATAAAAAAACTTATTGACAGTGGATATAGTTTGTGATATATTAAGTTACGTTGTATTTGAGATACAACGTATTGCACAAGAAGAAGTCACCGCTTCTCACCTTATGGCGTGCTAGTCACTAGGGTTACTAATTAAAACAAAAACGTTTAACGTATATTTTAATTTGTAATATCAGAGGGTGACGTGCGTCATCCTCTTTTTTGTGTATATAATAAAAATAATATATAAATAATGAGGTGTTT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAATAGAAACAAGAGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 44553-45040 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB899571.1 Megamonas rupellensis DSM 19944 F553DRAFT_scaffold00006.6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 44553 30 93.3 36 T....T........................ AGGTGAATTTTCTGGAAGTGGAAACATGATACTAAT 44619 30 100.0 35 .............................. AAAACATAAATCAACATAACGGAGGTTTTTATAAT 44684 30 100.0 36 .............................. AGACGAAGACTCAAAAAGCGTATACTATATTGATTA 44750 30 100.0 35 .............................. ATTATGCTAACATAGTTAAAGAAAAATCTATTCAA 44815 30 100.0 37 .............................. AAACAGCAGGTATTGCAGGCATAATAACGGTTTCATA 44882 30 100.0 34 .............................. GTCATAATATATTATAACTGATTTCAGCATATTA 44946 30 96.7 35 ..............A............... CCGCAAATATTAAAAAGAAGGGCAAGAAGGCTCAA 45011 30 93.3 0 ..............A...C........... | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 97.9 36 GTTTTCGTACAGTATCTGTTGATATTTATC # Left flank : AGAGAAGAAAAGTTATATTCATAGTGCTACATATAAGCAATTAGTAACGAAATATTTTACACGTAGATTGAAAAGTAGCTATATTGAATTTAACTTTTTGACACCGACTTTATTGTTTGGCGAAGAAGACAAAATGATTTGTCAACCGCATGATATAATAATGAATTTAGTCGCTATCTGGAATCTATTTGCCATTGATGAAAAATTGTATGAACAAGATTTAATTGAAAATCTAGCACAAGAAATACAGCTAGATGATTATGAAGTCGTTTTAAGACCACAGCTGATAAATGGCAAAAAAAGACCTACATTTCAAGGAAAATGTAGGTTTAGTTTAAAAAATAATATAATGGCAAATAAAATAATCTTAATGCTGGCAGAATTTTCTCAGTATACATCAATAGGAGTAAATACTCATCTAGGTATGGGAGCAATACAGATAAAATTAAATTAAAGCAAAATAAAAAGGCTTGTTATAGAAAAATAACTATAACAAGTCT # Right flank : CCCCTTAAAGATTAAGGTTTATAAAATATATTATAGATGAAAATAGTGATTTTATCAAGGTTTAGGGATTTTTTACAAGTGAAAAGGATTTTGAGAATTTAATGACGAATTTTTGTTATGATTATTGATATATAAATATTAAAAAAGATGAATATATCACTTGGTAAATTCAAAGAAAGGGGCATTTTGATGAAAGTTTATCAAATACGCATAAAATTATATTTATTAAAGGATATCATGGCACAATATGTGCAAATCATGTTGACTAGATTTATTGATAAAAGTTTATTTGCAAAAGAAAATCTAGGAAAATTACATAATACAAATACATATAAAAATTATTGCTATGATTTATTATCGCCATTGGAAAAAGATAAAATCTATAAAAAAGGCAAGATATATACTTTGACCATCAGAACTATTGATGAGGATATGGCAGAATTTTTCTATGAAGTTTGTCCAAATATAAATACTAGAGAATTTAAAGGTCTGACAGCAGA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCGTACAGTATCTGTTGATATTTATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 6700-7059 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB899619.1 Megamonas rupellensis DSM 19944 F553DRAFT_scaffold00054.54, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 6700 30 100.0 36 .............................. AATATGGTTATGCCCTATCTGTTCTACTAAAGTTAA 6766 30 100.0 37 .............................. TGTGTGGAGGAAAGGCAAGTAATACTGGCCAGATATA 6833 30 100.0 35 .............................. ATCTCATGTACAAAGTTCCCTAACATTTCAAACCC 6898 30 96.7 37 ............................G. TTGGTGTTGCACTAATATTGTCTTTTTCTAATCCAGC 6965 30 96.7 35 ......T....................... TTAACAAAGCTCTCCTTCTTTTTTTACTACATTCT 7030 30 86.7 0 ......T................TA....A | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 96.7 36 GATAAACATCAACAGGTGCTGTACGAATAC # Left flank : TAAACTATAAATATTATATGGCGGATTGCAATATAAAATCTTATATAGCCCCCAGTGTCTTATATATCAATGCTTTTTTTATACATCGGAGAGTCCACATTTATAAAAAATATGTCTAATCGCCGTATGGGGTGTGGTATATCTGCCATAAATGAAAATTTATGTCAAAGGTACTTCTAGAAATTTTTTATAGTGCGGGTAGCTTGCGAACCCCAACATTTAACTAGATATAAAAAAATAATTATGAATTTCCTTCCTTTTCCATTAAAAATATTGATATATAAGTATTTTTTTATAGAATTTGGGGAAATACATATATAAATATATTTTCTTATAAAATTTTACCAGCGAATTTTTTATAAAATCTTGATAGATATTGTAATTATTGACTTTATAAAATTATGGCTAATATCTTATATTTGCTGGTAAAATTTCTAAAAACCTTGCAATATCAATACTTTATAACTATAATGTAATTAATAAAACCTAATATTACTAGG # Right flank : AATTAAAATATTAATTAAATAAAACCATTATTTTGCCATATTCCGAAAAAACGGAAAAAGGATATAACAAGTCTTTTTTCTGCAATTAAAAAGATTGAAATTTCAGTTTATTTTTCTGCTAAGCTAAGTAAATATTTTTGTATTGCTAGATTGATAAATTATGACCGCCATATAATAGATAAAAATATGCCGGTATATAATAAGACCTGCATCAATAAAAAACGTCTGTACATGGCGGAGAATTTAATATATTATTTAATTTTATATTATGATGTGTGATATTCTTTAGAAGTTGAGCGGTAAATTTATTTGGGTAGAGAATTTGAGTATAAAAATAAACCTAGCAAAGTAAAAAATTGCTAGGTTTGAGTATTTATATAGATGTGATTTATGTGATATTCCCCTTTTTTGCCCCTTTTTTAATAAAATGGCTGAAAAGTATTGATATTATAAGACGTTCCCACACTCTCCGCCATTAAATTAAATGATACAGGGAAATA # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAACATCAACAGGTGCTGTACGAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //