Array 1 469902-471515 **** Predicted by CRISPRDetect 2.4 *** >NZ_WFIP01000003.1 Salmonella enterica subsp. enterica serovar Saintpaul strain 2570 NODE_3_length_729340_cov_60.0969, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 469902 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 469963 29 100.0 32 ............................. GCCGAAGCCATCAAATCAAAAACAAAATTATC 470024 29 100.0 32 ............................. GTTGTAGCGAATTGCCCGCTGTATCGTGTCGT 470085 29 100.0 32 ............................. GATTTTGATATCCACTGCCCACCGGTGGGGAT 470146 29 100.0 32 ............................. GCAATTAATAACAGAAAATAAATAGCGAGGAA 470207 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 470268 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 470329 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 470390 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 470451 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 470512 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 470573 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 470634 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 470695 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 470756 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 470817 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 470878 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 470939 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 471000 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 471061 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 471122 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 471183 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 471244 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 471305 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 471366 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 471427 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 471488 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 487775-488597 **** Predicted by CRISPRDetect 2.4 *** >NZ_WFIP01000003.1 Salmonella enterica subsp. enterica serovar Saintpaul strain 2570 NODE_3_length_729340_cov_60.0969, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 487775 29 100.0 32 ............................. GCCAGGGGTTCAGGATTTCGGATATTGCTGAC 487836 29 100.0 32 ............................. CGACGCCTCTTTTTTCTGTACCTTTTGCCGGT 487897 29 100.0 32 ............................. CACCTGGCGCCAGAAATATTCATGGTAATCGG 487958 29 100.0 32 ............................. AGGCTAACAGAAACATAGCTGATAGTTGGCGC 488019 29 100.0 32 ............................. TTTGCAGGACTGACCGTTACTGCCAGACCAGT 488080 29 100.0 32 ............................. TCACGGTGGAATATTGCAGCAAAATCAAAAGA 488141 29 100.0 32 ............................. GGTACTTTCGATACCAATAAGGACCGGATTAC 488202 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 488263 29 100.0 32 ............................. GCGCGGGAACGTGGGATGATGCCAGGACCATC 488324 29 100.0 32 ............................. TGGTCGAGGAGGGGCGGGCGATCACTGAAAAA 488385 29 100.0 32 ............................. TGGCCACAGTCTGGTTGTGTTGTTGGACGACA 488446 29 100.0 32 ............................. AAACGGCGCTCGTTTCAGCGGCAACGGCTGTG 488507 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 488568 29 96.6 0 ............T................ | A [488595] ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //