Array 1 1738750-1740427 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCIW01000004.1 Salmonella enterica subsp. enterica serovar Derby strain 2015LSAL01179 2015LSAL01179_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1738750 29 100.0 32 ............................. AGCGCCGATCCGGTGGTGTCCAACACAACGAA 1738811 29 100.0 32 ............................. GCTTCTGATTGCATTAGCTCCAAATCAGTACC 1738872 29 100.0 32 ............................. GCGTCAGGCGTGGTGGCCGTGATTACGGACGA 1738933 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 1738994 29 100.0 32 ............................. GGCTAACCCATGAACACTATTACCAAATTCAC 1739055 29 100.0 32 ............................. GTTGCCGCCCTTACTGCGCGAGGCGTTGGAAC 1739116 29 100.0 32 ............................. GAGGGGCCGTCTGCCGCATATCAAACGCTATC 1739177 29 100.0 32 ............................. CAACACGAAAGAAAAAATACTCAATATTATTG 1739238 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 1739299 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 1739360 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 1739421 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 1739482 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 1739544 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 1739605 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 1739666 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 1739727 29 100.0 32 ............................. CTTGCAGCCGAATACGGTATAGAGTGGGACGG 1739788 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 1739850 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 1739911 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 1739972 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 1740034 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 1740095 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 1740156 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 1740217 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 1740278 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 1740339 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 1740400 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1756686-1758667 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCIW01000004.1 Salmonella enterica subsp. enterica serovar Derby strain 2015LSAL01179 2015LSAL01179_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1756686 29 100.0 32 ............................. TTGAGGTTTGCGTTGAGCCTGTTCAGCATCAC 1756747 29 96.6 32 ............................C GCTGACTCTGCGGCGGATCTTCTCAACCAGTC 1756808 29 100.0 32 ............................. CCTAGAAAAGTTTGTTTAGGCAATCAAGCCCC 1756869 29 100.0 32 ............................. GTGTTAATTAATGAGTTTATTCCGTTTTAACA 1756930 29 100.0 32 ............................. AAATTTGGTTGACAGTAAAAGAGTGTGTCGGT 1756991 29 100.0 32 ............................. TCGGCTCGAGCACTTGCGACAACAAACACACG 1757052 29 100.0 32 ............................. GCGTTGAACTTGATATTCTCTACACCGATGCA 1757113 29 96.6 32 ..C.......................... ATATGAGGCAGCTCGCTGGCGGCTGGGATGGT 1757174 29 100.0 32 ............................. CCGTTTTTTTCCCACAGTTTGCCACCGAGACG 1757235 29 100.0 32 ............................. TTAAGTCGCTCTTTGTACGCTACACCGGAGGC 1757296 29 100.0 32 ............................. AAATATCCAGAGCTGGGCTTGAGGCTGACGGT 1757357 29 100.0 32 ............................. TAATTGACATACATTCACCATATTAAGGAAGA 1757418 29 100.0 32 ............................. CCATGCGCGGCGGCGCTTGCCCAGCTCAGAAA 1757479 29 100.0 32 ............................. GTAGTCTTCATATGCAGCGACATCATTGCCGA 1757540 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAC 1757601 29 100.0 32 ............................. CTGTGTGGTCTGTGCATAACGGTGTAACAGAG 1757662 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGGTC 1757723 29 100.0 32 ............................. CAGGAGTGGCTGGAGACTGTCGTCAAGCCTGA 1757784 29 100.0 32 ............................. GACCTATCAGCCTAATTTCCGGGGCAAGAGCT 1757845 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 1757906 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 1757967 29 100.0 32 ............................. GCGTTTATTTTTGATTTGTTATTTGGACGTTA 1758028 29 100.0 32 ............................. TTCCGGTCCTGCCCACTATTCGACAAAATCAG 1758089 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 1758150 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 1758211 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 1758272 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 1758333 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 1758394 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 1758455 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 1758516 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 1758577 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1758638 29 96.6 0 A............................ | A [1758664] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTCAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //