Array 1 5741-3912 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVAH01000196.1 Serratia fonticola LMG 7882 serratia7882_scaffold196, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5740 28 100.0 32 ............................ TGGTGGTGAATAATGGCAATGTGCGCACTAAC 5680 28 100.0 32 ............................ TTCACTGGCTTGCCTGAATGCCTGAGCGATCT 5620 28 100.0 32 ............................ TGCGCCGTTTCCGTCTTGCTTCGCATCGTGGC 5560 28 100.0 32 ............................ TCTTCCTGCTTGAAATTTCTGCGTTTTCGTGC 5500 28 100.0 32 ............................ ATCTACATGCGTAACTTTGCACTTCTTCACAG 5440 28 100.0 32 ............................ CACTGGCGGCAGACCTTCACCAGACCAGTGCT 5380 28 100.0 32 ............................ TGGGAGTGGTGGCAGAAGGGCCGGGAGAGTCT 5320 28 100.0 32 ............................ TCGGCAACCCTATCAACCAGCAGGACGCGGCC 5260 28 100.0 32 ............................ ACTGAAGTTAACGCTGGAAAGCCGCAAGACCA 5200 28 100.0 32 ............................ TACCAGAACCTGGTATACCTTCCGTGCCTATG 5140 28 100.0 32 ............................ TGAAAACCATGTAGCCCACATAGCCACATATG 5080 28 100.0 32 ............................ AGTGGACACGGTTTCCGGCACCAGTTCAGCAC 5020 28 100.0 33 ............................ CAAAGGGCAAGATCATCCACGGCCGCGCTCGCT 4959 28 100.0 32 ............................ ACATTCCTTTGGCCGCTGAATGAACATCACTC 4899 28 100.0 32 ............................ GCATCCGGACAAGCAGGGGTGGTTACTGGCAA 4839 28 100.0 32 ............................ ACGACGGGTAATTGTGCAGCTTGGTTAAGGTC 4779 28 100.0 32 ............................ AGGAGAATCATCCCCGCCAAGGTGTCTACCCC 4719 28 100.0 32 ............................ TGAGAGTGACCAGCACCCGCTTTATCCTGAAT 4659 28 100.0 32 ............................ AGAATACTGCAGGAAATCAGCGACAAGACCAA 4599 28 100.0 32 ............................ TTGTGGACTCGGCCAGCGGAGAAAGCTTGTCA 4539 28 100.0 32 ............................ AGTTGGCCACACAGTTTTTTGGTGGCAGCCGC 4479 28 100.0 32 ............................ TGTATTGATGCGAGCATGATGCAATGCCCATC 4419 28 100.0 32 ............................ AGGTAGCGCACCCCCACAATAACGCCACACAG 4359 28 100.0 32 ............................ TCGGCAACCCTATCAACCAGCAGGACGCGGCC 4299 28 100.0 32 ............................ GTTGGCATAACGGATCACGCACTGCTCTGCAT 4239 28 100.0 32 ............................ CCGCCGGGGGAATTAACGTTGACCGTGACATC 4179 28 100.0 32 ............................ TGGCGCCGCACTGCGAAAACTTGATGCCGTGC 4119 28 100.0 32 ............................ TTAACCCCGCAATTGTGGCCACGGTAGACCAG 4059 28 96.4 32 .........................G.. ATACGGAAGAATTTGAACATGTCATGCAGACG 3999 28 100.0 32 ............................ ATGCCAACGCTGAAAGTCGGCACAAAGACACG 3939 28 89.3 0 ...........C...........G...G | ========== ====== ====== ====== ============================ ================================= ================== 31 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCGAGCCAGAGGG # Right flank : GTTGGCGCACCGTCAACTTTCCACCCCAAGCTTGTTTTTATTGTTAAGGTAATTGATGTGAATGATTCATGCCATGTATCTATCTTTATGATTCATAATTAATAAAAATTAAATGAAAATCTAACACCAATCACTCTATCTAATGAGTGATTTATGCTAAAACAACAATATCGCGTTGGCATCTGTCATAGGTAATCACGTTCGGGATGATTTATGGCATAAAAACAGGGAAGTTTTCATTCCGTGCAAAATCAATTTTCGCCCTCTGATTTAAAAACCATTCTGCATTCAAAGCGTGCCAATCTCTACTACCTGCAGCATTGCCGGATCTTGGTCAACGGCGGCAGGGTGGAGTACGTTACGGATGAAGGTAAGCAATCCTTGTATTGGAACATCCCGATCGCTAATACCACAGCTGTAATGTTGGGGACGGGAACTTCTGTTACTCAAGCGGCAATGCGTGAGTTTGCTAAAGCCGGGGTGCTGGTTGGATTCTGTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3019-2370 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVAH01000250.1 Serratia fonticola LMG 7882 serratia7882_scaffold250, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================================================================================================================== ================== 3018 28 100.0 32 ............................ CAGTAGTAAACGAATATATGCCGCTGCGACCG 2958 28 100.0 32 ............................ GGTATTGCGTGACGAATCGGACTTCTATGAGG 2898 28 100.0 32 ............................ ATATAAGGCCCACTGGATGGAATGATGAGGCA 2838 28 100.0 81 ............................ GAGGCGTAGAGCCAGTTGCATCAAGAAGAAGGTACAGGCAGCTTAGAAACTTCCCGATGCCGTCACGCTTGAGCAACGTAA 2729 28 100.0 32 ............................ AGATAGCTCAGCGTAAAGGGATAACGCTCGCG 2669 28 100.0 32 ............................ TCGCGTAACGTTCTGTTTTCAGCATCGGCCTT 2609 28 96.4 184 ......................C..... ACAAGGGATTTTAAATCCCTTTTGATTGGCGACAAAATGACTATATCGCTGGTTTTTTAACGGCACAAACTGTTCGAAACTCTAGTTAACCTATTGATAAAAAACGGGCGCAGCATGCAGCGCCCCTACGTGTGAGGCCGGTGAAGGTTTATCAGCTGTCTTTAAATCCCTTGTGTCTACCAAT 2397 28 71.4 0 A....T...AA.G...C....AC..... | ========== ====== ====== ====== ============================ ======================================================================================================================================================================================== ================== 8 28 96.0 61 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAGTGCGCTCGTGCAACCGTTTCGGTAATGCCC # Right flank : TCAACTTCGGTTGTTATCGCGAAAGATCCTTTTTGCTACATTCAATGCAAACATTAAAAAGGAATTTAGACATGAAAAAACTTGCCTCAGTTTGTCTACTCAGCTTGTTGTTTGCCTCGGCCTGTAGCCCCCACAAAAGCTCCAATACCAAACCCATCGAGCTAAGGCCAACGGAAGTGGCACCGCTCGTTGATAAACCGCTCATGTACGCTCGTGAAGTTCGGGCAGCCATTCAAAGAAAGCTTTTTATCGAGGATGACTATCGCGGTAAAACCTGTGACATCAACATCAAGATGTCTAAAGACGGGAAGGTATATGACTTGCAGGGCAACGGCTATCCTCCGCTGTGTGAAGCTGCGATAAAAGCTATCAAAAATGCTGACATCCCCGCTCCATATGACGACGAAACCTACCAGCAATTCAAACAAACAGTGCTTAGCTTCCAACCTGTTTGAGCATCAGAGGCGGGGAGTCGATAGTCATGGGGGCTGCCTGGAATG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-2.81, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2125-1436 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVAH01000275.1 Serratia fonticola LMG 7882 serratia7882_scaffold275, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2124 28 100.0 32 ............................ CTTAAAGCATACTCAACTAACGAGGATAATAT 2064 28 100.0 33 ............................ AGGAATTTTACAGCGCGTTTTTTGTCGAATTCA 2003 28 100.0 32 ............................ AGCGTTCTTCTTGTTCTTCTCGCAATAGGCCT 1943 28 100.0 32 ............................ ATAAAGTGTTGCCGTAGCATCAAGGCTTCCCC 1883 28 100.0 32 ............................ TTGGTCATCATCACAGTCTTTCCCACGACCAC 1823 28 100.0 32 ............................ TGAATCAGGTCTGGGTATGAGCGAACCTGGCC 1763 28 100.0 32 ............................ AGCGCTGCCAGCAGTGCGGTTACGTATTCTTG 1703 28 100.0 32 ............................ CAAGGCGGCCATCAGATCATCTTCTGTTACGC 1643 28 100.0 32 ............................ AGAGGTGGCGGATGACATTTGCGCACTGCTTG 1583 28 96.4 32 .......A.................... AGCAACGTCTGATGTTCGCAGGTTCCCGTAGC 1523 28 96.4 32 .............C.............. AATCACAACCCACTGAGAAAGAGGAACATATG 1463 28 92.9 0 .......A.....C.............. | ========== ====== ====== ====== ============================ ================================= ================== 12 28 98.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TGGTTTTAACCCTAATTTAATGGCTGATTCTAACCTATTGATTTTAAAAGTTGGAGTCAGTCATGTTTAGAAAAGGGTTTTTGGGTAAGGTGGTTGTATTCTATTGTATTAACAGTTAGTTACCGCTGGCATGTAAC # Right flank : CCACCACATATTCGGTGAGTGGTTTCGCCACACGTAAATTGTTGCTGCCTGGCAGCTTACCGACTACGGCCATATAGCCGCATTATTGTGCCAACATATATCCAATCGCACATTCTGTGTTTAAATGTTCAAAGCCTGTGAGGGAGAAATGTGGTCAAGTATTTGTTCTACTCGTTGTTCTACGCCTCCGGTAACGTATAGGAAGGGAATATCACGTCTGGTCAATTCTTCGATATACCATTGCTGTTGTCGTTCACGGAATGACTCATCCTGGCGTGTGCCGTCCTGATGAAAGACGAAATCGTCAGCACAAAGTATAACGGTATCATAATGTCGACAGGCTAACTCCTCCAGCAAAGGGTCTGCTCTACCAAACATGGCCAGCGAGTAAAATAACGTTGTCAGCGGAGAAGTATCACAAACTAAATATTGATTTGGGCATGCAGTCATCTCCCATAAGGTCTGGGTTTGTGCAATATGCAGCATGTCTTCGAAAATCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 372-639 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVAH01000343.1 Serratia fonticola LMG 7882 serratia7882_scaffold343, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 372 28 100.0 32 ............................ AGTGCTGCGTCGGTGGCGGGGGTCAAAAGTGA 432 28 100.0 32 ............................ ACTAGGCAGGATGCTATTCAACGCCGGAAAAG 492 28 100.0 32 ............................ GTTGAATCCCCAGACAGTATTCAGTCCATTGC 552 28 100.0 32 ............................ TAAAGAGCTACCTGGGGACATAGATTATAACT 612 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCAATATTGGGGGACTGATTTGTGGGCTTTAGCCACTTCAAAAATAGCGCAGACTAAGGATCTGTCGCATAAGACGAGTGTTGCATGTTGAGGAGCGCAGCTATACAGGAAGGTTTGAAACCTCCAATGCGGCAGCATCGGGTAGGGTAGAAATACGACTAATCAGCGATTTTAGTGGACAGATAGACTCGTAATCATTTCACGAAGGGGTATCTACCTCTGGAGTGGGTTGTATCCTGCTTACCCTAATTTTTGAGCCATTTATAACTCATTGATTTTAAAAACCAGAAAAGGAACGGTGAAAAAAGGGTTTTCTGATAACTATCAGGGTTGTTGTTTAATTAACAGTGGATTAGCGATAAGATATAACAG # Right flank : AAGCCAGCGGGGCAGCACACACAGGGGGAGAGTTCACTGCCGTACAGG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 16914-17480 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVAH01000085.1 Serratia fonticola LMG 7882 serratia7882_scaffold85, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 16914 28 100.0 32 ............................ TCTATGGATTGTTGATTACTCGCCGTAAAGGC 16974 28 100.0 32 ............................ TTACGCCATTGCCTAGGTGATATGCGTAAACT 17034 28 100.0 32 ............................ TTGTTCACGCGTTGCCTTGATTGGAACGATTC 17094 28 100.0 32 ............................ AGTTCAGCGGCTCGCTAACCTGCAGCGTGATC 17154 28 100.0 32 ............................ TTGATGCTCATAGCCTGCGCCATCAGGTTCAT 17214 28 100.0 32 ............................ GGCACCGCCTTGGTAGGGGTAGGTGCTGCTGC 17274 28 100.0 32 ............................ AAGATCACCGCTGGATTCTTCCCGCTAGGTGA 17334 28 100.0 32 ............................ CTTCTCGTTTGATAACGCCAGCACTCAGCGCG 17394 28 100.0 31 ............................ AAGAGCTATCAGAAGCGGAAACGTACATCTG 17453 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGATAGCCAAGGCAACAGTGTGGGTTCTGTGGGGCAAGGTGGGCAAATGTATGCTCGCGTAGCGGAAGACAAAGGAGAACTGATTGTGAAATGGGGTGTCGGTAATGACATGCAATGTACTGTGGGATATATGCTGATGCCGCAGGCAAAAAACAGTCCCGTTTCAGCGATCCAGGTCTTCGATTCAGTTTGCCAATAGAGACAGCACACTTAGCTATCAATCTGACGGGAGCTATGGCTCCCATCTCCTTTTCCCTCACTGAAACTCTTCCGCACGGTGGTATGAAAAACGAGCTGCATTCATCCCTTGGTAGCTCTGTAATCATCCCGCCACCTGTACCTATCCCTGACACTCGTAGTGTCCCTCCAGACCCTATTTTTGAAGCTATTCATAACTCATTGATTTTAAATTAATGTTAGGGGTGGGTGAAAAAAAGGGTTTTCCGGAGGATCTTAAGGTTATTGTTTAAGTAACAGAGAATTAGCGCTAGGATGTAACA # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //