Array 1 144-839 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAFLMC010000024.1 Streptococcus suis strain 2138579 Scaffold24, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
       144	    36	 100.0	    30	....................................	CAATGACGATCTGAGCAACATCTGCCTGCT	
       210	    36	 100.0	    30	....................................	TCACGAATTGAGCCAGTGCCAACAGCACCA	
       276	    36	 100.0	    30	....................................	TTTAGAAAATGAAAAAGAAGAAACAGATGA	
       342	    36	 100.0	    30	....................................	TCAATACGTGACGTATATTTCATAGGTTCG	
       408	    36	 100.0	    30	....................................	GGGAAGTCGTGTATATGACTTTTTCACACT	
       474	    36	 100.0	    30	....................................	ATCAGTGTTTACTTGCTGAGAATATTCTAA	
       540	    36	 100.0	    30	....................................	ATTGGTTGGGTCCCGATAAACAAATGATGT	
       606	    36	 100.0	    30	....................................	AAAGAAGAAGACCAGGTTGCCATTGAGACC	
       672	    36	 100.0	    30	....................................	TAATTATCTCTTTGGACCGCATCGTGGCCA	
       738	    36	 100.0	    30	....................................	CTTCTGGTAGTTATCCCCATAACATTTGTA	
       804	    35	  83.3	     0	.......................T..T.-....TCA	|                             	T [826]
==========	======	======	======	====================================	==============================	==================
        11	    36	  98.5	    30	GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC	                              	       

# Left flank :   TGAAAAATAGGGATAAAAAACCTCCTTTTTGTGCGCCCTAAATACAAAAACTATTCCCGTTTTGTCATGAACTGCTCAGACGAGAATAGTTTCTTTAGCTGCTTAAATGCTTAACTTAATGACATTGGGTTGCCATTGAGACCG
# Right flank :  ATAAGCGATAGTACATCTCCCCCACAATTTTCTAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTAAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTTGTGACGGACGGTATGATTGTTGGGCTGGGGACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCAGAAGAAGGGTTACAAATCACAGGCGTAACGACCTCTCATGCTACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATATGTGGACTTGACGGTGGATGGAGCAGATGAGGTTGATGGTGACTTCAATGGGATTAAAGGCGGTGGCGCAGCGCTTCTCATGGAGAAAGTGGTAGCAGTCAATAGCAAGGACTGCATCTGGATTGTGGATGAGTCTAAGGTGGTTCAAACCCTAGGAGCCTTCAAGTTGCC

# Questionable array : NO	 Score: 6.19
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         F [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-1.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-7] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0.37   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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