Array 1 14513-14080 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWSE01000006.1 Dorea longicatena strain BIOML-A4 scaffold6_size169391, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 14512 37 97.3 29 G.................................... GACAGCTTTGTAAAGCCATATACGTCTCT 14446 37 97.3 29 G.................................... CTATCATCGGGGCAATGAAAGCTATCCTC 14380 37 100.0 29 ..................................... TATAGGTGTCGAACTCTTTCCACCAGTAC 14314 37 100.0 29 ..................................... GATTTCTGTCAGAAGCTTATATCAAGTCT 14248 37 100.0 29 ..................................... CCTCGTCTGTCTTGCCACACAATCCATCG 14182 37 100.0 29 ..................................... CCACACCCTCGGTCACATGAAAGAGATAT 14116 37 94.6 0 T...............................C.... | ========== ====== ====== ====== ===================================== ============================= ================== 7 37 98.5 29 AGTTTGAGAGTCTTGTTAATACGGAAGGATTTTAAAC # Left flank : AAAAAAGGATTCTATCTCAGCTTTATAAAAATCTTTCAGAAAAAATATCGGAAGATCATTTTGAAGAATTTGCGACTGTGAATCAGAAGGTTATCCAGTTTATGGATAAGGTTACGAGTTCTTCCGAATATAATCTGACATATGATGTTGATTTTCAGGCAGCAGGTCTGATAAAATATTGTAATGTACATATGGATTCCTGTTATGATAGTCTGACTGAAAAGTTTATAAACTATCTGAGAACCATAAAGCAGATCTGTAATGTTGATATTGTTTTTGTGTTGAATCTGAAGCAATATTTCAGTACCGAGGATCTGAGAGAAATCTATAAACACTGTTTTTATACGAAGATGTATCTTATTAATTTGGAAGGAGTAAAATCAGACCCCATCGAAAGTGACAGATATGTTATTATAGATAAAGATCTTTGTGTGCTGGACCTTGTGTATTAACAATCTTCTATCGTAAGAAGATAACGACTCGGCGAGAACCGGATTTGA # Right flank : CACCAAAGAGTTCAGTAAAATCAAGCGTTCTCAGTTCTGCAAACGATAATTTAACAGAATATCGAAAAAGAGCAACAAACCCCGAAAATCCAGTATTTCCGGGGCTTTTCTTTGCGTATCATTTGATTTTATTCCTGCAATAATTGCTTTTCAAAGGTGGATAATAATTTGTTGATCGTAAAGAAATAACTCTTGCATTCGCTGCATGTTTTTGCATCGACTTCGATATCACCAAGAATAATGAGTTTGGCAGCCTGGAGTGCTGCAATAATGGTACGAAATTCGTCGGGTGTAATATCTGTGGCGTGATTAATCAATTTTTTCGCCGCAGAACAACAGAGTTGATAATTAATTTCTGCCTGGGCTTCTGATTCTGCAAGTCCAAGACGAGGCAGAACGGTAAGAGCGTAAGCGGTTGCTTCTATGTCAGAATGATTGAAGGCATAGGAAATATGGCTCATAGTAAAACCTCCTTAAGTTTTTAAGAAAATTATAACATA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTGAGAGTCTTGTTAATACGGAAGGATTTTAAAC # Alternate repeat : GGTTTGAGAGTCTTGTTAATACGGAAGGATTTTAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 83750-82398 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWSE01000014.1 Dorea longicatena strain BIOML-A4 scaffold14_size117474, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 83749 32 100.0 33 ................................ TAAATTCCCACTGCCCTGTAGTCCAGAAGTCTT 83684 32 100.0 36 ................................ GGGTGTTAACTTGCTTGATATTACAGAATATATCAA 83616 32 100.0 34 ................................ GTACAAGATATAAAATGACGGTCAATGACGCTTG 83550 32 100.0 34 ................................ ACCTGCTTCATTCAGTTTTGAATATAACTGAACA 83484 32 100.0 33 ................................ ACTAAGTACGACAATTATATTACGGACTGTCTT 83419 32 100.0 35 ................................ GATATATCAGTAGGTTTTACATTAATAATGGAATC 83352 32 100.0 33 ................................ TTCCGTACCCATTCCTAATGCGGACATTGCATC 83287 32 100.0 35 ................................ TTCTCCAGAGTCATGGCCACATCCCCGTTCTCCAC 83220 32 100.0 33 ................................ GATAAGAGATTATCGGCAGAAGCCGTGGCGAAG 83155 32 100.0 36 ................................ ATGAATATGTGCAGATCTTCACCCAGCTACCGTAAT 83087 32 96.9 35 ..........A..................... TTGTGACTGTAAGATTTTGGGATATGGTCGAAAAT 83020 32 100.0 33 ................................ GCAATAGTTCCATCATCAACCGCTTTTGTCAGC 82955 32 100.0 33 ................................ ATTACTGCAATTATTTTCATGATACTTTTGCCT 82890 32 96.9 34 ..........A..................... ATGATGCCCCTGCATCCGGTGGAAACCATTGCTG 82824 32 96.9 33 ..........A..................... AACAAGGAAAATCCGCAAAGGAAATCGTACCAT 82759 32 96.9 33 ..........A..................... TCTGATAAAAACTTGATCATATGTGTCCTTTCC 82694 32 96.9 35 ..........A..................... GACATCTCTATAACCTCACTTCCTAATGTTCTTCT 82627 32 96.9 34 ..........A..................... ATGTATCTTGTTGTCAGGTTCTTCCAACCAATCC 82561 32 96.9 34 ..........A..................... GCTATTCGCATCAACTACATGAATGCAAATAATG 82495 32 100.0 34 ................................ ATGTATCTTGTTGTCAGGTTCTTCCAACCAATCC 82429 32 96.9 0 ..........A..................... | ========== ====== ====== ====== ================================ ==================================== ================== 21 32 98.8 34 GTCATCCTCCTTGTGAGGATGTGAGTTGAAAA # Left flank : AGACGAATATCCACCGTTCTTCTGGAAGTAGGTGATGGAATGCTGGTTTTGATTACATATGATGTAAATACCCAGACATCTGCTGGGAAAAGGCGATTAAGAAAAGTAGCAAAAGAATGTACAAACTATGGAACTCGTGTGCAAAATTCTGTATTTGAATGTCAAATGGATGCAACAAAATGCAGGCAGGTAAAACATATCTTAGAGGATATTATAGATAAAGACGTTGATAGTTTGCGGTTTTATTATCTAGGTGATAAGTATAAAAATAAGGTAGAACATATTGGCGCAAAACCTGGATTTGATGTTACGGATACTTTGATATTTTAGTGCGAATAATAAGCGCACAGAAATCTTCTGGGAGATTCGCACCGGAAAATGGTGTGCTTTTCCAGAAGAAAAGTAAATAGGAATTAGAAAAAATATAAATTTTTAACGTATTATATTCAAAGGGTATAATACGTGCAGTTTTAGACAGAGTGTTTTTGTTTAAAATTGCT # Right flank : GAGAATGATGTAAAAATGTATGGTACTCAAGTATAGCCCTTTTTATGAGAAAAATAGTTCCAAGTAACGATATGAATTCAATTTATGTTATGCGAAAAAGGGGAGAATTGAAAGAATATAAGTTACAGTTTCTTAGCATTAAAAAAGGACTGCATTATTAGGGAGGAGTGCAGCCCTGAGGAAAAAGTTATGAAAAAGATTTAAAGTGTTTGTTCTTTTGAACAATTCCTAGTATAGAAGCGAATTGTGATAAAATTGTGATGGAATTAGAAAGAAATTGTTAACAAATTAAAAACATAAAATAGAATACGATTGGATGCATCATAAACGGTGCCAATGTTGAAATCCAAAAGTCCGGGTGTTAGAATTACAACAGATACTATACATAGAAGATATATATAAATATCAAAGAACACAAGAAACCACACAGAACATACGAACAAACACCAAGGAGGAATACACCATGCGGATCCTAATCTACGGCGCCGGAGTCATCGGAA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATCCTCCTTGTGAGGATGTGAGTTGAAAA # Alternate repeat : GTCATCCTCCATGTGAGGATGTGAGTTGAAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.00,-4.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //