Array 1 2415-3297 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_NLQL01000049.1 Escherichia coli strain MOD1-EC5219 MOD1-EC5219_49_length_13333_cov_69.1637, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
      2415	    29	 100.0	    32	.............................	CATTTAATGCAAAACTAATTGCACAATAAATA	
      2476	    29	 100.0	    32	.............................	GCGATAAACCTCCTCATCGCTGATATCAATAA	
      2537	    29	 100.0	    32	.............................	ATAAAGGCTCGGCGGCGCAAAAAATGGCACGG	
      2598	    29	 100.0	    32	.............................	CTCTCGTTGTTGTGCCTCAGTACCGGTGCGCG	
      2659	    29	 100.0	    32	.............................	CACACCGGTGCGACGGGAAACGTTCAGCGGCC	
      2720	    29	 100.0	    32	.............................	GGAATAGTTAATTTCGGTGATGGCTGCGTAAA	
      2781	    29	  96.6	    32	............G................	AGTAATGCTGCGTTGAGATGACCAGGCGGGCT	
      2842	    29	 100.0	    32	.............................	TTGACGCCAGCGGCGACCCGCGCCACGGGCTT	
      2903	    29	 100.0	    32	.............................	TAGCCAGACGTACTCGCAATCTGTCGGCGGTC	
      2964	    29	  96.6	    32	............................A	CCAGTTCTCCGTATTCTGTGGTTATCGTTGCT	
      3025	    29	 100.0	    32	.............................	GGAGTTCAGACATAGGTGGAATGATGGACTAC	
      3086	    29	  93.1	    32	............TT...............	CCCGGTAGCCAGGTTTGCAACGCCTGAACCGA	
      3147	    29	  96.6	    32	.................A...........	GCAACGACGGTGAGATTTCACGCCTGACGCTG	
      3208	    29	  96.6	    32	.T...........................	GGCGCACTGGATGCGATGATGGATATCACTGA	
      3269	    28	  75.9	     0	..A........C..T....A..-.C...C	|                               	T [3288]
==========	======	======	======	=============================	================================	==================
        15	    29	  97.0	    32	GAGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGGAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGTAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTGTCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTCAGAACAAATGTATACTTTTAGA
# Right flank :  CAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCT

# Questionable array : NO	 Score: 6.11
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GAGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [6,3] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-13.50,-12.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-13] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.92,0   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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