Array 1 558224-563005 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJPZ01000002.1 Crateriforma conspicua strain V7 V7_contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 558224 28 100.0 32 ............................ CTTCGGCGATCACGTCGGATTTATCGATTGCT 558284 28 100.0 32 ............................ GCGGCGATCGGTGATCGATTGCCGGTCTATCG 558344 28 100.0 32 ............................ CATTGTCGTTCATCTGAATCAGCAGCGACCTT 558404 28 100.0 32 ............................ CGACAGACATCACGCACCCCCGGCGCCTGCAA 558464 28 100.0 32 ............................ TGCAATGGGCCAGGGCCGTCGATGCCGGCGTA 558524 28 100.0 32 ............................ TATACCGGCCGGAAGCTGCGGCAGTTTGGTCA 558584 28 100.0 32 ............................ TCCGCTTGAGTTGTCGTGTTGAGTCTCTTGTA 558644 28 100.0 32 ............................ ATCTTCCAAGTCGCCGAAGACGCATTGGCTAT 558704 28 100.0 33 ............................ AAACTGACTTTCCATCTCGGCAACGGCTTTTGC 558765 28 100.0 33 ............................ TTCGACGGTGGTGTTGTTCCACGCTTCGTGATT 558826 28 100.0 32 ............................ AAGTAACTAACCAATAGAGGACAGATCAATGA 558886 28 100.0 32 ............................ CAACGTCCCGGCACTGTGGGAATTGATCTAAC 558946 28 100.0 32 ............................ GCACCAACCGGCTGCTGCCATTGTGGGATCTC 559006 28 100.0 32 ............................ AGCACTGGCGAGCACGAGATCGTCAAAGACAC 559066 28 100.0 33 ............................ GCCACAGGTCCGCGACACGGGCTCGAATCTTGA 559127 28 100.0 32 ............................ GCGAAGCATCGGAAACCGCGGCGTCGGTGCCA 559187 28 100.0 32 ............................ ATCTTGCGACGGTCCCACTCTTTCGGCCCTAA 559247 28 100.0 32 ............................ ATAATCCGCGTGCGGACGTCTTCAACGAATTC 559307 28 100.0 32 ............................ GCTCTCCAACCAATTCGTCTTCGAAGTCATCA 559367 28 100.0 32 ............................ TGATGCCGTGGATGACGCGGTGGGAACAGGAA 559427 28 100.0 32 ............................ TCCTTCCCTTGGAGTTCACAATGAGCGAACGA 559487 28 100.0 32 ............................ TCTCCCGCTGTCCGCACCCGTAGGTCTGCGGC 559547 28 100.0 32 ............................ CTGAAGCGACGCCAAATTTTCGTTGTGCCAGT 559607 28 100.0 32 ............................ TGAAACAAATACAGAAAACGGCTGAAACACGG 559667 28 100.0 32 ............................ TATGCGGCACTGCGTCCGTTCGCTGTCAGCGA 559727 28 100.0 34 ............................ CGCCCAGGCAGTCGGACAAGAGCCCGGCTGTTTA 559789 28 100.0 32 ............................ GATTCAGTCGATGTCGGCGGCGGATTCAAAGC 559849 28 100.0 32 ............................ AAACCGGCATCGAAGGCGCTGATCGGTCCAAA 559909 28 100.0 32 ............................ GTCCAGGATCGCGTGCTTGTCGTCGCCGATCG 559969 28 100.0 32 ............................ ACTTAATATGAAAGCGGCGTGCCAATGCACGT 560029 28 100.0 32 ............................ CCAAACGGAACCATCGGCCATACGAATGCGGC 560089 28 100.0 32 ............................ TTGTTTACGGCGTGCGCGGCGTGTCGATGGGC 560149 28 100.0 32 ............................ TGCAAGACAAGCCCGAAGCGGTCGCAGAACCC 560209 28 100.0 32 ............................ AACAGCGGTGCGTGCGTGCCTTCGGTGGCCTC 560269 28 100.0 32 ............................ AGGCGGGGCAACGTCGCAAAACTTAAGCCCCT 560329 28 100.0 32 ............................ GTTTGGCTGCTTTGCGAATTAGATCGGGCGCT 560389 28 100.0 33 ............................ TCGGTGCTCCGCGAGCATGGCGACCAACGCCGA 560450 28 100.0 32 ............................ ATGGGTGTCGCTTGGTTGGTGACGCGCGGCCG 560510 28 100.0 32 ............................ TCGTAGCCGTGCTGCATCGCCGCTTCGTCGCG 560570 28 100.0 32 ............................ TACAAGCGGAATCAGCGACGGGCGTACATCGA 560630 28 100.0 32 ............................ AACTCAGCGGCGCACGATCGGCAGCAGGCCAC 560690 28 100.0 32 ............................ TTGCTGCGTGGACGATTGATGCAAGCATCGCA 560750 28 100.0 32 ............................ TCGATTCGATCATCGACACTGCTGCGGACTTT 560810 28 100.0 33 ............................ AGCTTGTTCACGCCTCGCATTCTACCGAACACT 560871 28 100.0 32 ............................ TTCCCAAACGACACCGGCACCACTGTCGCCAC 560931 28 100.0 32 ............................ TTGGAGCAAGCAATGAACACCACCGAGTATTC 560991 28 100.0 32 ............................ TTTTCGGTCTTTGATCTCACGCCACGCGTGCT 561051 28 100.0 32 ............................ ACGATCGACGCCGCCGGGACGTTAAGCGTCCC 561111 28 100.0 32 ............................ ACCACCGGATCTAGCCGGGTCGCGTAGTTCTC 561171 28 100.0 32 ............................ AGACTGTCCGCGTCGTGAATTGCAAAGGCAAT 561231 28 100.0 32 ............................ CTCTTTCCCTTGGAGCAAACAATGACAGAGTC 561291 28 100.0 32 ............................ ATCACGACCACGGCGTCGGCTTCCGCGTCGAA 561351 28 100.0 32 ............................ GTTGGCCTTTCGATCAGTTGCAGACGCGGACG 561411 28 100.0 32 ............................ GCCCGGTGCGTTGCCGGGCGGCTTTTCATGCG 561471 28 100.0 32 ............................ ATTGAAGAAGAATTCGCCCGGGCACTGCGAAA 561531 28 100.0 32 ............................ TTGCCAGCAGCTACGGTACGTTGCAGCCACGC 561591 28 100.0 32 ............................ GATAGTCGGCTGCGGCACATTGACTTGCGAGG 561651 28 100.0 32 ............................ TCGTGTGCGGCGAAGCGATGGACGTTGGGGAC 561711 28 100.0 32 ............................ CGGCACTCAAAGCTAGTTCGTGGATCGGCTAG 561771 28 100.0 32 ............................ TGCAACAACTCACTTCGACAACTTCTTTGCGA 561831 28 100.0 32 ............................ TCGCAATCTTCTAGCATCACTCCAAATATGAA 561891 28 100.0 33 ............................ CGAAGAAAGTCGGACAGGACCGCGTCGTTGCTG 561952 28 100.0 32 ............................ TACGACGTCCACGAAATCACCGAAGGCGAAAT 562012 28 100.0 32 ............................ GCGTACATCATCTGGCACGCCAGTTTGTTCAC 562072 28 100.0 32 ............................ CGTTAATTTGTCGCCACGGGATCACGGCGATG 562132 28 100.0 32 ............................ ACGCGGAACGATCGCGTTGACCACCGGCATCG 562192 28 100.0 32 ............................ TGCGGCACGATCATCAAACTGGCGTCGGCCGG 562252 28 100.0 33 ............................ CCGATCGCGGTTTCAGCGAAGGGAAGGGTTGGC 562313 28 100.0 32 ............................ AAGGGGTACAGGAAACGGGAGGGGGAAGGCAT 562373 28 100.0 32 ............................ TTCCAACAGTTCAATTTTCGCGCGTAGTGCGT 562433 28 100.0 33 ............................ TTCCAGCGAATGAGTCGCGAAGCTGTGCCGCAA 562494 28 100.0 32 ............................ ACCCACGCGCCGCTACCGACATCGTAGGCTTC 562554 28 100.0 32 ............................ TCCAGGTTAAAGGGAAACGGTCCTAGTAATGT 562614 28 100.0 33 ............................ CCCATTGCACGTTGAGTGCCGAAGAAGTGAGCC 562675 28 100.0 32 ............................ TTGCTGACATCGATCGGGCTTTTGGCCTTCGC 562735 28 100.0 32 ............................ GGACCCAAACGGGATCGTTAGGTGCACACGTA 562795 28 100.0 33 ............................ GATTGTCGTTTTCGTACAGTCGCCCCCTATAGT 562856 28 100.0 33 ............................ ACGACGACGGGGTGTGTCCGCGTTGTCGCGCAA 562917 28 100.0 32 ............................ TCGCGATTCTTGTGGTGGGAATCGCTCTCTCG 562977 28 100.0 0 ............................ | G [563003] ========== ====== ====== ====== ============================ ================================== ================== 80 28 100.0 32 GTTCGCTGCCGCATACGCAGCTCAGAAA # Left flank : AAGAACTCGAATCGATCGAATGGTCGAAATCAATGGTTGGGCTGGATGACTATGTGCATCGGACGCGTCCACGCTCCACACCATCAAGGGTCGAGCGTTGCGCCACGTTTGCTCGTCATCAACCGAAAGCCTCTCCCGAGCGGCTCATTCGCCGCGCGATGAAGCGTCACAGAATCGATGAAGCGGAAGCGAGACGTCGCTATTCGGAATACTCGATGGATCGCTGCCGTCTTCCGTGGGTGGACATGCGCAGCGAAAGCTCGCGGCATCATTTCCGCCTCTTCATCGATCGCGTCGAGGCTCCGCCCACGACTGAATGGGGATTCAGCACCTACGGGCTCAGCCGGACAGTCAGCCTGCCGATATTTTGACCCTTTTTTTGACAGTTTCAAAAAAGGCAACAAATACCGCTGCAAATGCTCTTTTGCCTGGAGAAAGGTTGATCAGTATCTGGAGTAACAAGTACTTGCAGGACAACTGCTTGGGTTAGATTCTTGCCT # Right flank : AGGACTGAATCTCCTTGCGGGCGCGGCCTCGGATTGGCCACCGCCACGGTGTTCCAATCACGCTTTGACATCGTGGTCGTTGTTGAAGATGAAGCGTCGGTGATTGACTTGGCCCCCGACTTTCATCGCATGAAGCAGATCGCAACACGCGGCGTGATCGTTACGGCATTGTCATCGCAGCCGCAAAGCGATTTCACGTCACGTTTCTTTGCACCACGCCACAACATTGACGAAGATCCCGTGACGGGGTCGGCACACTGTTGCCTGGCCCCGTACTGGTGCCGGCGTCTGGGTCGCCAACAATTGATCGGATACCAGGCATCACAGCGTGGTGGATTCGTGGACTGTGAGTTGCGGGGGGATCGGGTCCGATTATCCGGCTGTGCCGTGACCGTTTTCGATGGCCAACTGCGGAAAATCGCCGAACCGACAAACGCGACCTAGGCATTCCATTGCACGGTGCCATCACCATCGGCCGAACGTCCGGCATGACGAGCCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCATACGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCATAGGCAGCTCAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3842031-3844111 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJPZ01000001.1 Crateriforma conspicua strain V7 V7_contig00001, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 3842031 36 100.0 30 .................................... CTTCGCCTTCGTATCGCTCGACGTCCGCCG 3842097 36 100.0 30 .................................... TAGTCCGACGACTGCACCACATTGATCGTG 3842163 36 100.0 30 .................................... AAGCCGCGGCCGACATCGGCAGAGCTCGAG 3842229 36 100.0 30 .................................... TTTTTGTTGTTCGTCGCGGTGTCGCGTTTT 3842295 36 100.0 30 .................................... GAACCGGGTCAAGCATGGTTTCCGTTTTCC 3842361 36 100.0 30 .................................... CATGGGGTCAAAGACCAGTTGGTATCTGAC 3842427 36 100.0 31 .................................... GATGAATCGAATCGATGTAAGCCCTACCTTA 3842494 36 100.0 30 .................................... ACGATCGCAGCGGCAACGACCACCACCTGA 3842560 36 100.0 30 .................................... TCATCGCCAAGGTCATACGGCGGCACGAAT 3842626 36 100.0 30 .................................... ATCCTCGACCCGGACAATAAAACGATCAAG 3842692 36 100.0 30 .................................... TGGCCATTTGCAGGACCCAGGACGCACCGA 3842758 36 100.0 30 .................................... CATGCGGCGAATCAACAAAAGCAATCAAGC 3842824 36 100.0 30 .................................... ACAAGTGCTGAGATAGCGCCACTGTGCCTA 3842890 36 100.0 30 .................................... AACAAACCTTCGTTTCCGCGCGGGTCCCAA 3842956 36 100.0 30 .................................... TTGTCGGTTTGCGTGATCCTGTGTCGCTTC 3843022 36 100.0 30 .................................... GGCCGACCTTCTGCGCTTCCTCGCTGATCT 3843088 36 100.0 30 .................................... CATCCGCCACATACGGAACCGGCGACCAAA 3843154 36 100.0 30 .................................... GTGATCTGGTCGACTTGCTCCTGCGAAAGA 3843220 36 100.0 30 .................................... TGCGGCAAGCTGCTGACACCGCACTTGGTG 3843286 36 100.0 30 .................................... TGAACGGCGTTGGCGTTCAACGCGTTCTTC 3843352 36 100.0 30 .................................... GGCTTGGCGTCTTCGCCTCCGACGAACTGG 3843418 36 100.0 30 .................................... TACGAGCTAAACGCTTCACCAATTATGGGA 3843484 36 100.0 30 .................................... AATACCGACACTGTGTGCCACTATGCATCG 3843550 36 100.0 30 .................................... ACCGCCATGTACCTATTTGACGAAAGCTGA 3843616 36 100.0 29 .................................... ACGTCCAGGGTGGCGGGTGTGATGCCGCC 3843681 36 100.0 30 .................................... GTGCGGCGAACGCGATCGAACGCGCGTGGA 3843747 36 100.0 30 .................................... GGGCCTGGATCTGGACCCGCTGGATGGAAG 3843813 36 100.0 30 .................................... GGTGAGTACGTCATGGACTTGGCCGAGGAA 3843879 36 100.0 30 .................................... ATGATCAACGACGAACGGAATGAATACATC 3843945 36 100.0 29 .................................... CTGAAGGAACAGTGGGCCGAAGCGATGCA 3844010 36 100.0 30 .................................... GACCAGATCGACCTGAACGCGACCCACAAA 3844076 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 32 36 100.0 30 AGTGTATCTGACCTCGGCCTGCGACCAATCCGCAAC # Left flank : CGACCGAACTTGGCGGCGAGCATGGTCCGCTGAACGTTGTCGTCCACCGCTATGTCAACCAATTCGGAGCTTGTTTGAGAGGCGAAACTAAAACTCTTGACTACCCCAAACGAGCAACACCGTGGAACTGAGTGCATATCGAAGTATGTGGACGATCGTCATGTTCGACCTGCCGGTCGATACACCGAAAGCTCGCAAAGCCTATGCGATGTTCCGTAAGCAACTCCTCAGTGACGGCTTTTTTAAGCTGCAGTACAGTGTGTACGCTCGCCCTTCACCGAGCAAAGAAATTGCGAATGTGCATATCGCTAGAGTAGAACGATGGTTACCCAACGCCGGAGAAGTCCGAGTTCTTGAGATGACGGATAAACAGTTCGAAGCAATGAAGATCTTTTGGGGCCGAAAACGTCGTCCTCCTGAATCAACACCTCAACAGCTTGAGTTTTTTTGACCGAGTTCATGTCGTAAATTCTTTGACGGTAAAGCCTTACAGCAGAGGT # Right flank : CAAGGAAATCTGCCGATGTAGTCCCAGTTATTGTCGAAGTCTGTGTCCTCGAATGACTGAAAATGGCCGCGTCTTTGATTGAAATCATCACGCCCCAGCGGCCCGTCGCTTGGGCTCCGGTCACTTCTATCTAAAAGAGCCCCCTCTTTCCATCTGCTGTGATTGATAGCCGCCCGCTTGCTTGCGAGAGGGCCGGCCTCTTTTGTTCGGGACGGACGTCGCGATACCCGGGCAAGTCCGATCAGGTGCCGAATTGAAGCTTGTAAAATCAGCGCGCCGCAAAGAGACTCGGGGACTCAGATAGCCCGTCAGTGCCCCTTCTTGCTCCCGCGCCATGTTCGCCGCTCTCAAAAGACTCGTCCCAAACCGATTCCGCCAGCGCCGTCAATCATCGCACCAAGCCCAGCCCTGGACGTGCGGTCCGCTGGAGGAAAGGCACATGCTGTCGGCGATCTCGGTGCTAGCCGCCGGCACGACGGGCGACGAAACCATCCGTCTGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTGTATCTGACCTCGGCCTGCGACCAATCCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //