Array 1 39-787 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCKD01000008.1 Moraxella catarrhalis strain 2047127K NODE_8_length_62189_cov_56.049451, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 39 28 100.0 32 ............................ TTACACGCTACTGACCTACATTTGGGTAGGAC 99 28 100.0 32 ............................ AGTTTCAAAATATCAACTTCCCCTAGTAGCTT 159 28 100.0 32 ............................ TCATTATTATCGCCAAAACTCACCCAGTCAAA 219 28 100.0 34 ............................ TCTCAAACCCTGCCCCGTTTAGCGTATCAATAAT 281 28 100.0 31 ............................ AAAGGTTTGCATCCCCTTTTGATGGTTTATA 340 28 100.0 32 ............................ AGTTATCGGGCTTGTATTCGCCATTTTCTTTA 400 28 100.0 32 ............................ TATCGCAATTTTGTTAAAAATGTGATAACCTT 460 28 100.0 32 ............................ TTACACGCTACTGACCTACATTTGGGTAGGAC 520 28 100.0 32 ............................ AGTTTCAAAATATCAACTTCCCCTAGTAGCTT 580 28 100.0 32 ............................ ATAATTAACAGTTGCACAACCAATCTTAAAGA 640 28 100.0 32 ............................ ATTGGGAATTATTAAGAGTTTGATCAACAGTA 700 28 100.0 32 ............................ ATTGACTGAATTTACCGCAGTTTCAATCGTTG 760 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 13 28 100.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TAGAAAGCCTTGGTGTTGTCAGTTTTTGAGCAGAACGAC # Right flank : ATTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACATTCAATCCAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 284382-286224 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCKD01000003.1 Moraxella catarrhalis strain 2047127K NODE_3_length_286262_cov_56.553110, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 284382 28 100.0 32 ............................ CACACCCACCACTGTTTGACTTCATGGCGGAC 284442 28 100.0 32 ............................ TGGTTGCTATTATAGGGTATCTTACATTAAAA 284502 28 100.0 32 ............................ TACTGTTTGCAGTTTAACGACTTTGCAGGGGC 284562 28 100.0 32 ............................ CAAAAAAAGAAGTTTCGGTGATTAAGGCCCAT 284622 28 100.0 21 ............................ GCTGGCGGACGGTGTTGATGT Deletion [284671] 284671 28 100.0 32 ............................ ATCTACAAGACCATATATTTCACCCTCTGATA 284731 28 100.0 32 ............................ GCCATCACGAATGGACGATGAATAGCAGTGAT 284791 28 100.0 32 ............................ ATCAGGAAAGTTCGGCTCGCCATTGTCGTTAA 284851 28 100.0 32 ............................ ATTAAACAGCGACTTTCAAAAACCCACAGTAG 284911 28 100.0 32 ............................ TTAGCGTACAGGGGGTATTATTTGGCATGAAT 284971 28 100.0 32 ............................ GGGGTCAAGATTGGGCGTTGGCATTAGCAGAC 285031 28 100.0 32 ............................ TGTTCATCAAGAAAGGTTTTGATGGGCAAGAT 285091 28 100.0 32 ............................ ATCTGATGCTTGCCTAATTGCCGATAAACTCG 285151 28 100.0 32 ............................ TTGCACCAACACCGCTCATGACAATGAGCAAT 285211 28 100.0 32 ............................ AATATAAGTTATCATCAACTGTGTGTAGCTTT 285271 28 100.0 32 ............................ ATCAACGCCAAGCTGGCGGACGGTGTTGATGT 285331 28 100.0 32 ............................ AGACTGCCCTAGGATGAATGCACCTATTGCCA 285391 28 100.0 32 ............................ CAGTCTTGATATCGAACGGTACAGCATATCGC 285451 28 100.0 32 ............................ TCTCCAGTTGGCAACGAAAATCCATTTTTCTC 285511 28 96.4 32 ..........A................. TTATTGGTAGGGTAAGCGAATGTACCAAGCGT 285571 28 100.0 32 ............................ ATATTAGATGAAAAGCGATTGGCGGAGTTGGT 285631 23 82.1 0 .......................----- - Deletion [285649] 285654 28 100.0 32 ............................ GTGCTGAATGTGAAAGCATTGCATGGTCGGCT 285714 28 100.0 32 ............................ ATCTTTGCACATAGAGACCAAAACCTTATCAA 285774 28 100.0 33 ............................ TTCAAAATGAGCGCCCAAAATTATTACAAGATT 285835 28 100.0 32 ............................ AGCCACAACACCAAGTGCACCCCAAAGATCAT 285895 28 100.0 33 ............................ AAGCTTCAACGACTGGGGTTTTTTCACTAGAAA 285956 28 100.0 32 ............................ TTGTAGCTCAAAATTGGCTTTGGCGATGTCCA 286016 28 100.0 32 ............................ GCCTTGGTGTTGTCAGTTTTTGAGCAGAACGA 286076 28 100.0 32 ............................ TTACACGCTACTGACCTACATTTGGGTAGGAC 286136 28 100.0 33 ............................ AAGCTTCAACGACTGGGGTTTTTTCACTAGAAA 286197 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 32 28 99.3 31 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTAGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTGTAGCTCAAAATTGGCTTTGGCGATGTCCACTTCAC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //