Array 1 162812-160769 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZLL01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462406, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 162811 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 162750 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 162689 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 162628 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 162567 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 162506 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 162445 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 162384 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 162323 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 162262 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 162201 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162140 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 162079 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 162018 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 161957 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 161896 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 161835 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 161774 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161713 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161652 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161591 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161530 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161469 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161408 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161347 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161286 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161225 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161164 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 161103 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161042 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 160981 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160920 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160859 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160798 29 93.1 0 A...........T................ | A [160771] ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181300-179319 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZLL01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462406, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181299 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181238 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 181177 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 181116 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 181055 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 180994 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 180933 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 180872 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 180811 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 180750 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 180689 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 180628 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 180567 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 180506 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 180445 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 180384 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180323 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180262 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180201 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 180140 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 180079 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 180018 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 179956 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 179895 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 179834 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 179773 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 179712 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 179651 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 179590 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 179529 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 179468 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 179407 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179346 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //