Array 1 1172870-1171883 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLUC01000024.1 Providencia alcalifaciens strain wls1933 441, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1172869 28 100.0 32 ............................ AGCTAGTGCAATCATTGCGTAATCAAGTGGAA 1172809 28 100.0 32 ............................ AACCTCCGGCACACCGTTACTTGGGATTTCTT 1172749 28 100.0 32 ............................ AAGTGTTTTGCCTTGGTAGCTGTTGTTACTTG 1172689 28 100.0 32 ............................ CATCGCCTCGGCAGCTGCTAGGTTTTGATATC 1172629 28 100.0 32 ............................ TCAAGGTGTTTATGAGGCAGTTGCAACAAACT 1172569 28 100.0 32 ............................ TTTCCAAGTAGTGCCCATTCGAAATCATCCTC 1172509 28 100.0 32 ............................ AGTCAATATCCGGCTGGCGCTCGTTAATTTCG 1172449 28 100.0 32 ............................ TGTAGTATGTCCATCCATCCATTAGGCAGAGA 1172389 28 100.0 32 ............................ AATGGCAATACATGGTCAACATCGAGGGATGT 1172329 28 100.0 32 ............................ TTAATCAGCGTTGCTCCATCTCGAGCCTCGCG 1172269 28 100.0 32 ............................ TCGCGGATTTCTTCAAGATGTACGTTCACCTT 1172209 28 100.0 32 ............................ TGACGAAATTGTATTTTGTGATACTGGCTCGG 1172149 28 100.0 32 ............................ GTAATGAAATGGTTAGGAGAGAGGATTTTAAA 1172089 28 100.0 32 ............................ TAACACTGTCCCTCGCTCAAATAACAGTTATT 1172029 28 100.0 32 ............................ GATGACAAAATTCTATCGCGATTATTTGCCCT 1171969 28 96.4 31 .................T.......... TTTTAGGTCAATAACGGAAGCATCGGCGCAT 1171910 28 75.0 0 ..........CC..T..T....A.A.T. | ========== ====== ====== ====== ============================ ================================ ================== 17 28 98.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGTGAAATCGATTCAAGCGGTTCCCTCTAATGCTCGACCAGTGAGTTATCTTCGTCAGCAAGTCAAAGGCGCTGCACGTATTGAATCTGATATGCATAAGAAAGCAGCGCTTTGGGCTAAAAAATCAGGTCGAACACTGGGTGAATGCTTAGCGGATTTAGAGGAGTCTCGCCCAACTAAGCGTAGTTTACTGCCTTTTATTTGGGTAGAAAGCTTGCATAGTAAGAGTGAGAAAAGGGGAAGTCGTCCATTCCCACTTTTTATTCAGCGCGTTGAAGCGGAACACGTCATTGAGGGGCGTTTTAATTGTTATGGGCTTAGCCAAGTCGTTGAACGTAATAAAATACTGACAACAGTCCCTCATTTTTGACCTTTGTTTTTTGCTCTTTAATAACAAGGCGTAAAATCAATAAGTTACAGTAGTCAGTGAAATAAAGGGTATTTTATTAAGAATGTCCTTAACTGATTGTTGTAACTTATTTTTTGTTTGATATTCTCTA # Right flank : TCGGTCTCATCTATTAACTTTTATTATTTATGCCGTTGGGTGATTTGTACTAAATTTGGCGGCTGTTATTCTACAAAATAACAGAATAGTGACTGTTGTAAGATAGCTTAGAAATGAACGATAGAGCGGGTCTAGATTACTGCCATACAGGCAGCTTTACCGAAAAAGACCTGAATAATAGAACGGGTGTAATACTGTGTTATCTGACGACAAACATCATAGACCAACAGATTAATTGGAGAGCGCCATGTAGTACGAAATTATGATTAAGATCCTGTGTATGACCTTAATCTTCAAAGTGACAAAATTATCGGGCTCACTCAAACCCACAAGTTAAATATCAGGGATAACTGCTCAAACGCTTGATGGATCAGGCGTTCTGTATAGCGTGGAAGGATAGAAATAATCAGACCTAACATGCTGATACCAATCGTTAATGTTAGGGGGAAACCGACTACAAACACAGATAGCTGAGGGGTCATTCGGTTAAGAATGCCGAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1182261-1181573 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLUC01000024.1 Providencia alcalifaciens strain wls1933 441, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1182260 28 100.0 32 ............................ GTTCAGTCACCGCCGATACCAGCGCAACTAAC 1182200 28 100.0 32 ............................ GATAATGACCAGCATCCCACTGAGCAGATTGA 1182140 28 100.0 32 ............................ ATAACGAAAAATAGTGACGCACTAAATTTAAG 1182080 28 100.0 32 ............................ GATCGGGATAAATTAGGCGACTTGGGCATCGG 1182020 28 100.0 32 ............................ TACAAACAACCTTTTATATGCTACTGCGGATT 1181960 28 100.0 32 ............................ ATTAACCCCATCCCCGGGACCCCGCCCTTAGC 1181900 28 100.0 32 ............................ AGTAGGCAGCACGGTAAACGGCGGTCTAACAA 1181840 28 100.0 32 ............................ GATTGATTCAGCGTAGTTATCAATCATTTCGT 1181780 28 100.0 32 ............................ TCAGTAACCGTTTGGGGATCATCATTCCGATT 1181720 28 100.0 32 ............................ TAGTGCGGCTTTTTTCGTATACGCCGCCACAG 1181660 28 100.0 32 ............................ GCGATGATGATTGGTGGAGTAGCTCAAATGTT 1181600 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 12 28 100.0 32 GTTCACTGCCATACAGGCAGCTTAGAAA # Left flank : GCGGATACACGCACAATTCAGAACGAAACCCGTAAGACTGAGTTGTTACAGACTAACTGGACTGGTGCAACGACGGATTACTATAAAGAGAAGGCAATGTTCCAAGCTTCTCAAGATATTTTTAAAGATCTCAACAGTATGTCGTTATTTGGCGGACGTTAATTGATTTTTACCGCACCCTTTGGCAGTGGCATGTGTACAGGGTGCGGTCTTTTCATTCTTCTCGTTATGTTCGTGCTATTTCTTCCTCGTTATTTTCTCGCCCGGTATATTTCTAAGCACCTTTATCTATAGGTTTATTTCTCTTTCACCATTGCTGAATTTCATTTTGTGCGTATGGTTTATGGTGTCGATTTGATGATGTATTTGACCTTTATTTTTTGTTCTTTAAAAAATCGCCTAATAAACAACAGGTTATTGAGCCACCTAAAATAAAGGGTATTTTCAGCCTTTTGGTGCTAACTGTCTGTTGTGATTTGTTTTATTTCTGATAATTTATA # Right flank : TCGATAAGCCACTATTATTTTTCTTAAACTATTAACCATAAGTTTATAGAGGGGAAACTCATCAAGGTAGACATTACAAGGATTGCGAAGTGCCTCGCAAAATGAATCTTCAATTTTTTTAAAGCTTGTAATGTCATTGCTGAGAGACTTAAATGAAATAAATAATTCAAAAAAATTATAGTATTAAGCAAAGGAATATTGACATGGATGACTTTTCCTCATCAGATTTAAAAACTATTTTGCACTCAAAACGTGCCAACATGTATTACCTCGAGCATTGCCGCGTGATGCAAAAAGATGGGCGAGTTCTCTATTTTACGGAAGCGAAAAATGAAAACTTGTATTTCAATATTCCTATTGCGAATACCACCGTTTTACTTTTGGGAACGGGAACTTCGGTCACTCAAGCAGCAATGAGTATGTTATCGCAAGCGGGGGTATTAGTTGGCTTTTGTGGTGGCGGTGGAACACCGCTTTATATGGCAACAGAAATCGAATGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCATACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //